Rh6AG060800
BHLH Family

Transcription factor bHLH84-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0011699
Physical Location & Seq
Forward (+)
9106178 .. 9107396
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG060800.1

Sequence Viewer

Length: 789 bp
ATGGAAGCTCTAGCATTTATTCCAGAGTTCGAGGACGAAGATTTGATCATTTCCCATTTGCTTGCTAATTACTGTTCTGTCACAAATGACCTGAATCATCAGGCTTCAATCTCTCAAATCCCATTTGCAAATTGTCCCAGCAGCCATGAATGTTCAGCAGCGAAGAACATGGAAGGCATTGCTAATCTTTATTCTCGCAGAATTATGGCAACAAATTGCCATAACCCTGAACCTTTTCATCCCTGGGATGCCAGCAGTAGCACCAACTTTTTTTTCAGTCAAATTGAAGAAAATGTAGGCATGGACCAAGTAATGAGAAATTGCAACGTGGAAGATCATGAAGTCGTGTCTGAGAATTCTAAGAAAAGGTCTTGCAGTACTTCTGTAGATCATGTCCAGAAGAACAAGAGGAATGTGAAGTCAAAGAAGACTGATCAAAAGCCAGTCTTAACTAGAAACATTGCAGATAGTTGCAGCTCAGGGGATGATGAACCCATGAATCAGGATTTGAGTCCAAAAGCAAGAATCAGTAGGGGATTAGCAACTGATGCACAAAGCACATATGCAAAGAAAAGAAGAGATAAAATAAACGCAAGGCTGAGAATTCTGCAGAATCTTGTACCTAATGGAACAAAGGTTGATATCAGCACAATGCTCGAGGATGCTGTTGAGTATGTGAAGTTCTTAGAGCTTCAGATCAAGCTTTTAAGCTCTGATGAGCTGTGGATGTACGCTCCTGTCGTTAACAACGGAATAGGCATTGGAATTCATGACTTGCTCAACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

262

Amino Acids

29.38

Weight (kDa)

5.63

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 190 - 230 5.3e-08 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 190 - 237 9.3e-07 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011699)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14760 AT2G14760 AT2G14760 AT4G33880
fragaria_vesca FvH4_2g04210
malus_domestica MD05G1098800.v1.1 MD10G1104600.v1.1
prunus_persica Prupe.8G143500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0253631
rosa_laevigata RLG00000014998
rosa_multiflora Rmu_sc0000362.1_g000001 Rmu_sc0002405.1_g000005
rosa_roxburghii Rroxscaffold_7G00211750
rosa_rugosa Rorug05G0545200
rosa_samantha Rh6AG060800 Rh6BG054600 Rh6CG054200 Rh6DG051700
rosa_wichuraiana Rw6G005400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 355, 603, 765
AcuI CTGAAG 1 cut(s) 677
AfaI GTAC 3 cut(s) 379, 621, 731
AgsI TTSAA 2 cut(s) 108, 287
AjnI CCWGG 1 cut(s) 242
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 6 cut(s) 8, 477, 691, 703, 711, 721
AluI AGCT 6 cut(s) 8, 477, 691, 703, 711, 721
Ama87I CYCGRG 1 cut(s) 656
ApeKI GCWGC 3 cut(s) 141, 158, 474
ApoI RAATTY 3 cut(s) 355, 603, 765
Asp700I GAANNNNTTC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 304
AvaI CYCGRG 1 cut(s) 656
AvaII GGWCC 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 434
BbvI GCAGC 3 cut(s) 153, 170, 486
BcgI CGANNNNNNTGC 2 cut(s) 637, 671
BciT130I CCWGG 1 cut(s) 244
BclI TGATCA 2 cut(s) 45, 433
BfaI CTAG 2 cut(s) 11, 453
BfmI CTRYAG 2 cut(s) 384, 608
BisI GCNGC 3 cut(s) 142, 159, 475
BlsI GCNGC 3 cut(s) 143, 160, 476
BmcAI AGTACT 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 244
Bme18I GGWCC 1 cut(s) 304
BmeT110I CYCGRG 1 cut(s) 656
BmgT120I GGNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 244
BmsI GCATC 3 cut(s) 238, 538, 652
BpiI GAAGAC 1 cut(s) 434
Bpu10I CCTNAGC 1 cut(s) 478
BsaJI CCNNGG 2 cut(s) 242, 243
Bse1I ACTGG 1 cut(s) 443
Bse3DI GCAATG 2 cut(s) 177, 459
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 2 cut(s) 242, 243
BseGI GGATG 5 cut(s) 238, 253, 490, 667, 732
BseMI GCAATG 2 cut(s) 177, 459
BseMII CTCAG 3 cut(s) 342, 492, 590
BseNI ACTGG 1 cut(s) 443
BseXI GCAGC 3 cut(s) 153, 170, 486
BseYI CCCAGC 1 cut(s) 137
BsiHKCI CYCGRG 1 cut(s) 656
BslFI GGGAC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 120
BsoBI CYCGRG 1 cut(s) 656
Bsp143I GATC 5 cut(s) 45, 334, 388, 433, 696
BspCNI CTCAG 3 cut(s) 343, 491, 591
BspHI TCATGA 2 cut(s) 337, 769
BspMAI CTGCAG 1 cut(s) 612
BsrDI GCAATG 2 cut(s) 177, 459
BsrI ACTGG 1 cut(s) 443
BssECI CCNNGG 2 cut(s) 242, 243
BssMI GATC 5 cut(s) 45, 334, 388, 433, 696
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 571
BstAPI GCANNNNNTGC 1 cut(s) 548
BstC8I GCNNGC 2 cut(s) 63, 253
BstDEI CTNAG 5 cut(s) 351, 360, 478, 599, 685
BstF5I GGATG 5 cut(s) 238, 253, 490, 667, 732
BstKTI GATC 5 cut(s) 48, 337, 391, 436, 699
BstMBI GATC 5 cut(s) 45, 334, 388, 433, 696
BstMWI GCNNNNNNNGC 1 cut(s) 548
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 242
BstSFI CTRYAG 2 cut(s) 384, 608
BstV1I GCAGC 3 cut(s) 153, 170, 486
BstV2I GAAGAC 1 cut(s) 434
BtsCI GGATG 5 cut(s) 238, 253, 490, 667, 732
Cac8I GCNNGC 2 cut(s) 63, 253
CciI TCATGA 2 cut(s) 337, 769
Cfr13I GGNCC 1 cut(s) 304
Csp6I GTAC 3 cut(s) 378, 620, 730
CviAII CATG 7 cut(s) 146, 169, 301, 338, 392, 496, 770
CviQI GTAC 3 cut(s) 378, 620, 730
DdeI CTNAG 5 cut(s) 351, 360, 478, 599, 685
DpnI GATC 5 cut(s) 47, 336, 390, 435, 698
DpnII GATC 5 cut(s) 45, 334, 388, 433, 696
Eam1104I CTCTTC 1 cut(s) 571
EarI CTCTTC 1 cut(s) 571
Eco32I GATATC 1 cut(s) 643
Eco47I GGWCC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 677
Eco88I CYCGRG 1 cut(s) 656
EcoRI GAATTC 3 cut(s) 355, 603, 765
EcoRII CCWGG 1 cut(s) 242
EcoRV GATATC 1 cut(s) 643
FaeI CATG 7 cut(s) 149, 172, 304, 341, 395, 499, 773
FalI AAGNNNNNCTT 2 cut(s) 431, 463
FaqI GGGAC 1 cut(s) 120
FatI CATG 7 cut(s) 145, 168, 300, 337, 391, 495, 769
FauNDI CATATG 1 cut(s) 562
FbaI TGATCA 2 cut(s) 45, 433
Fnu4HI GCNGC 3 cut(s) 142, 159, 475
FokI GGATG 5 cut(s) 225, 260, 497, 674, 739
Fsp4HI GCNGC 3 cut(s) 142, 159, 475
FspBI CTAG 2 cut(s) 11, 453
GluI GCNGC 3 cut(s) 142, 159, 475
GsaI CCCAGC 1 cut(s) 141
Hin1II CATG 7 cut(s) 149, 172, 304, 341, 395, 499, 773
HincII GTYRAC 1 cut(s) 745
HindII GTYRAC 1 cut(s) 745
HindIII AAGCTT 1 cut(s) 701
HinfI GANTC 5 cut(s) 94, 499, 511, 525, 613
HpaI GTTAAC 1 cut(s) 745
Hpy166II GTNNAC 1 cut(s) 745
Hpy188I TCNGA 3 cut(s) 352, 696, 715
Hpy188III TCNNGA 6 cut(s) 23, 338, 397, 503, 770, 786
Hpy8I GTNNAC 1 cut(s) 745
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 8 cut(s) 128, 324, 375, 464, 474, 551, 566, 610
HpyF10VI GCNNNNNNNGC 1 cut(s) 548
HpyF3I CTNAG 5 cut(s) 351, 360, 478, 599, 685
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 7 cut(s) 149, 172, 304, 341, 395, 499, 773
Ksp22I TGATCA 2 cut(s) 45, 433
KspAI GTTAAC 1 cut(s) 745
Kzo9I GATC 5 cut(s) 45, 334, 388, 433, 696
LmnI GCTCC 1 cut(s) 739
Lsp1109I GCAGC 3 cut(s) 153, 170, 486
LweI GCATC 3 cut(s) 238, 538, 652
MaeI CTAG 2 cut(s) 11, 453
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 79
MalI GATC 5 cut(s) 47, 336, 390, 435, 698
MboI GATC 5 cut(s) 45, 334, 388, 433, 696
MboII GAAGA 7 cut(s) 50, 175, 299, 344, 412, 439, 588
MluCI AATT 9 cut(s) 67, 130, 201, 214, 282, 319, 355, 603, 765
MlyI GAGTC 1 cut(s) 520
MnlI CCTC 3 cut(s) 25, 402, 652
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 3 cut(s) 449, 707, 744
MspR9I CCNGG 1 cut(s) 244
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 548
NdeI CATATG 1 cut(s) 562
NdeII GATC 5 cut(s) 45, 334, 388, 433, 696
NlaIII CATG 7 cut(s) 149, 172, 304, 341, 395, 499, 773
NmuCI GTSAC 1 cut(s) 79
PaeR7I CTCGAG 1 cut(s) 656
PagI TCATGA 2 cut(s) 337, 769
PasI CCCWGGG 1 cut(s) 243
PcsI WCGNNNNNNNCGW 1 cut(s) 738
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 4 cut(s) 94, 499, 525, 613
PkrI GCNGC 3 cut(s) 143, 160, 476
PleI GAGTC 1 cut(s) 519
PpsI GAGTC 1 cut(s) 519
Psp6I CCWGG 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 137
PspGI CCWGG 1 cut(s) 242
PspPI GGNCC 1 cut(s) 304
PspXI VCTCGAGB 1 cut(s) 656
PsrI GAACNNNNNNTAC 2 cut(s) 665, 697
PstI CTGCAG 1 cut(s) 612
RsaI GTAC 3 cut(s) 379, 621, 731
RsaNI GTAC 3 cut(s) 378, 620, 730
SaqAI TTAA 3 cut(s) 449, 707, 744
SatI GCNGC 3 cut(s) 142, 159, 475
Sau3AI GATC 5 cut(s) 45, 334, 388, 433, 696
Sau96I GGNCC 1 cut(s) 304
ScaI AGTACT 1 cut(s) 379
SchI GAGTC 1 cut(s) 520
ScrFI CCNGG 1 cut(s) 244
SfaNI GCATC 3 cut(s) 238, 538, 652
SfcI CTRYAG 2 cut(s) 384, 608
Sfr274I CTCGAG 1 cut(s) 656
SinI GGWCC 1 cut(s) 304
SlaI CTCGAG 1 cut(s) 656
SmlI CTYRAG 1 cut(s) 656
SmoI CTYRAG 1 cut(s) 656
Sse9I AATT 9 cut(s) 67, 130, 201, 214, 282, 319, 355, 603, 765
SspMI CTAG 2 cut(s) 11, 453
StyD4I CCNGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 74
TaiI ACGT 1 cut(s) 330
TaqI TCGA 2 cut(s) 30, 657
TasI AATT 9 cut(s) 67, 130, 201, 214, 282, 319, 355, 603, 765
TatI WGTACW 1 cut(s) 377
TfiI GAWTC 4 cut(s) 94, 499, 525, 613
Tru1I TTAA 3 cut(s) 449, 707, 744
Tru9I TTAA 3 cut(s) 449, 707, 744
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 3 cut(s) 141, 158, 474
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 6 cut(s) 162, 227, 354, 504, 512, 758
TspGWI ACGGA 1 cut(s) 765
VpaK11BI GGWCC 1 cut(s) 304
XapI RAATTY 3 cut(s) 355, 603, 765
XhoI CTCGAG 1 cut(s) 656
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 2 cut(s) 11, 453
ZrmI AGTACT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.