AT4G33880

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011699
Physical Location & Seq
Reverse (-)
16239363 .. 16241169
1807 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33880.1

Sequence Viewer

Length: 1059 bp
ATGGAAGCCATGGGAGAATGGAGCAACAACCTCGGAGGAATGTACACTTATGCAACCGAGGAAGCCGATTTCATGAACCAGCTTCTCGCCTCTTATGATCATCCTGGCACCGGCTCATCCTCCGGCGCAGCAGCCAGTGGTGACCACCAAGGCTTGTATTGGAACCTTGGTTCTCATCACAACCACCTTAGCCTCGTGTCTGAAGCCGGTAGCTTCTGTTTCTCTCAAGAGAGCAGCAGCTACAGCGCTGGGAACAGCGGATATTACACCGTTGTTCCACCCACGGTTGAAGAGAACCAAAATGAGACAATGGACTTTGGGATGGAAGATGTGACCATCAATACAAACTCATACCTTGTTGGTGAGGAGACAAGTGAGTGTGACGTTGAGAAATACTCTTCTGGAAAGACTCTTATGCCTTTGGAAACCGTAGTGGAGAACCACGATGACGAGGAAAGCTTGTTGCAATCTGAGATCTCTGTGACTACTACAAAATCTCTCACCGGCTCCAAAAAGAGATCCCGTGCCACATCTACTGATAAAAACAAGAGAGCAAGAGTGAATAAGAGGGCCCAGAAGAACGTAGAGATGAGTGGGGATAACAATGAAGGAGAAGAGGAAGAAGGAGAGACGAAGTTGAAGAAAAGAAAGAATGGGGCAATGATGAGTAGACAGAACTCAAGCACCACTTTCTGTACGGAGGAAGAATCAAACTGCGCTGATCAAGACGGTGGAGGAGAAGACTCATCCTCTAAGGAAGATGATCCCTCAAAGGCCCTCAACCTCAATGGTAAAACAAGAGCCAGTCGTGGTGCAGCCACCGATCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGGATTAACGAGAGACTAAGGATTTTACAAAATCTCGTCCCCAATGGAACAAAGGTCGATATTAGTACAATGCTTGAGGAAGCAGTTCATTACGTCAAATTTTTGCAGCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATGTATGCGCCGATTGCTTTCAATGGGATGGACATTGGTCTCAGCTCACCGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

352

Amino Acids

38.77

Weight (kDa)

4.86

Isoelectric Point (pI)

60.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 282 - 322 1.4e-08 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 283 - 329 6.6e-06 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011699)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14760 AT2G14760 AT2G14760 AT4G33880
fragaria_vesca FvH4_2g04210
malus_domestica MD05G1098800.v1.1 MD10G1104600.v1.1
prunus_persica Prupe.8G143500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0253631
rosa_laevigata RLG00000014998
rosa_multiflora Rmu_sc0000362.1_g000001 Rmu_sc0002405.1_g000005
rosa_roxburghii Rroxscaffold_7G00211750
rosa_rugosa Rorug05G0545200
rosa_samantha Rh6AG060800 Rh6BG054600 Rh6CG054200 Rh6DG051700
rosa_wichuraiana Rw6G005400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 670
AciI CCGC 1 cut(s) 258
AclWI GGATC 3 cut(s) 513, 758, 818
AcsI RAATTY 1 cut(s) 956
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 3 cut(s) 44, 697, 925
AfeI AGCGCT 1 cut(s) 247
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 3 cut(s) 290, 640, 1024
AjnI CCWGG 1 cut(s) 103
AloI GAACNNNNNNTCC 2 cut(s) 154, 186
AluBI AGCT 7 cut(s) 82, 213, 240, 459, 967, 987, 1047
AluI AGCT 7 cut(s) 82, 213, 240, 459, 967, 987, 1047
Alw21I GWGCWC 1 cut(s) 989
Alw26I GTCTC 5 cut(s) 299, 362, 623, 865, 1046
AlwI GGATC 3 cut(s) 513, 758, 818
Aor51HI AGCGCT 1 cut(s) 247
AoxI GGCC 2 cut(s) 570, 774
ApaI GGGCCC 1 cut(s) 574
ApeKI GCWGC 6 cut(s) 128, 131, 234, 237, 815, 964
ApoI RAATTY 1 cut(s) 956
Asp700I GAANNNNTTC 1 cut(s) 942
AspLEI GCGC 4 cut(s) 128, 248, 719, 1012
AspS9I GGNCC 3 cut(s) 570, 571, 775
AsuHPI GGTGA 4 cut(s) 152, 374, 493, 1041
BaeGI GKGCMC 1 cut(s) 574
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 2 cut(s) 574, 989
BauI CACGAG 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 747
Bbv12I GWGCWC 1 cut(s) 989
BbvI GCAGC 6 cut(s) 140, 143, 246, 249, 827, 976
BccI CCATC 3 cut(s) 316, 344, 1024
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BciT130I CCWGG 1 cut(s) 105
BclI TGATCA 2 cut(s) 97, 721
BcoDI GTCTC 5 cut(s) 299, 362, 623, 865, 1046
BfmI CTRYAG 1 cut(s) 241
BfoI RGCGCY 1 cut(s) 249
BglII AGATCT 1 cut(s) 474
BisI GCNGC 6 cut(s) 129, 132, 235, 238, 816, 965
BlsI GCNGC 6 cut(s) 130, 133, 236, 239, 817, 966
Bme1390I CCNGG 1 cut(s) 105
BmgT120I GGNCC 3 cut(s) 570, 571, 775
BmiI GGNNCC 4 cut(s) 109, 164, 508, 572
BmrFI CCNGG 1 cut(s) 105
BoxI GACNNNNGTC 1 cut(s) 1038
BpiI GAAGAC 1 cut(s) 747
BplI GAGNNNNNCTC 2 cut(s) 380, 412
Bpu10I CCTNAGC 1 cut(s) 188
BpuEI CTTGAG 3 cut(s) 210, 664, 953
BsaI GGTCTC 1 cut(s) 1046
BsaJI CCNNGG 6 cut(s) 9, 31, 57, 148, 166, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse118I RCCGGY 3 cut(s) 110, 206, 503
Bse1I ACTGG 2 cut(s) 135, 804
Bse3DI GCAATG 1 cut(s) 666
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 6 cut(s) 9, 31, 57, 148, 166, 282
BseGI GGATG 6 cut(s) 100, 116, 327, 746, 1008, 1035
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 2 cut(s) 462, 1057
BseNI ACTGG 2 cut(s) 135, 804
BseRI GAGGAG 2 cut(s) 380, 750
BseSI GKGCMC 1 cut(s) 574
BseXI GCAGC 6 cut(s) 140, 143, 246, 249, 827, 976
BseYI CCCAGC 1 cut(s) 248
BsgI GTGCAG 1 cut(s) 834
BshFI GGCC 2 cut(s) 572, 776
BshNI GGYRCC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 989
BsiSI CCGG 4 cut(s) 111, 123, 207, 504
BslFI GGGAC 1 cut(s) 881
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 5 cut(s) 299, 362, 623, 865, 1046
BsmBI CGTCTC 1 cut(s) 623
BsmFI GGGAC 1 cut(s) 881
BsnI GGCC 2 cut(s) 572, 776
Bso31I GGTCTC 1 cut(s) 1046
Bsp120I GGGCCC 1 cut(s) 570
Bsp1286I GDGCHC 2 cut(s) 574, 989
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 7 cut(s) 97, 474, 518, 721, 763, 823, 994
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 1 cut(s) 258
BspANI GGCC 2 cut(s) 572, 776
BspCNI CTCAG 2 cut(s) 463, 1056
BspHI TCATGA 1 cut(s) 72
BspLI GGNNCC 4 cut(s) 109, 164, 508, 572
BspPI GGATC 3 cut(s) 513, 758, 818
BspT107I GGYRCC 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 1046
BsrDI GCAATG 1 cut(s) 666
BsrFI RCCGGY 3 cut(s) 110, 206, 503
BsrGI TGTACA 1 cut(s) 42
BsrI ACTGG 2 cut(s) 135, 804
BssAI RCCGGY 3 cut(s) 110, 206, 503
BssECI CCNNGG 6 cut(s) 9, 31, 57, 148, 166, 282
BssMI GATC 7 cut(s) 97, 474, 518, 721, 763, 823, 994
BssSI CACGAG 1 cut(s) 194
BssT1I CCWWGG 3 cut(s) 9, 148, 166
Bst2BI CACGAG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 4 cut(s) 271, 286, 430, 731
Bst6I CTCTTC 4 cut(s) 285, 403, 609, 847
BstAUI TGTACA 1 cut(s) 42
BstDEI CTNAG 5 cut(s) 188, 471, 753, 875, 1043
BstDSI CCRYGG 2 cut(s) 9, 282
BstEII GGTNACC 1 cut(s) 140
BstF5I GGATG 6 cut(s) 100, 116, 327, 746, 1008, 1035
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 4 cut(s) 128, 248, 719, 1012
BstKTI GATC 7 cut(s) 100, 477, 521, 724, 766, 826, 997
BstMAI GTCTC 5 cut(s) 299, 362, 623, 865, 1046
BstMBI GATC 7 cut(s) 97, 474, 518, 721, 763, 823, 994
BstMWI GCNNNNNNNGC 2 cut(s) 243, 1016
BstNI CCWGG 1 cut(s) 105
BstPAI GACNNNNGTC 1 cut(s) 1038
BstPI GGTNACC 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 574
BstV1I GCAGC 6 cut(s) 140, 143, 246, 249, 827, 976
BstV2I GAAGAC 1 cut(s) 747
BstX2I RGATCY 2 cut(s) 474, 518
BstYI RGATCY 2 cut(s) 474, 518
BsuRI GGCC 2 cut(s) 572, 776
BtgI CCRYGG 2 cut(s) 9, 282
BtsCI GGATG 6 cut(s) 100, 116, 327, 746, 1008, 1035
BtsIMutI CAGTG 1 cut(s) 142
CciI TCATGA 1 cut(s) 72
CfoI GCGC 4 cut(s) 128, 248, 719, 1012
Cfr10I RCCGGY 3 cut(s) 110, 206, 503
Cfr13I GGNCC 3 cut(s) 570, 571, 775
Csp6I GTAC 3 cut(s) 43, 696, 924
CviAII CATG 2 cut(s) 10, 73
CviQI GTAC 3 cut(s) 43, 696, 924
DdeI CTNAG 5 cut(s) 188, 471, 753, 875, 1043
DpnI GATC 7 cut(s) 99, 476, 520, 723, 765, 825, 996
DpnII GATC 7 cut(s) 97, 474, 518, 721, 763, 823, 994
Eam1104I CTCTTC 4 cut(s) 285, 403, 609, 847
EarI CTCTTC 4 cut(s) 285, 403, 609, 847
Ecl136II GAGCTC 1 cut(s) 987
Eco130I CCWWGG 3 cut(s) 9, 148, 166
Eco24I GRGCYC 2 cut(s) 574, 989
Eco31I GGTCTC 1 cut(s) 1046
Eco47III AGCGCT 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 987
Eco57I CTGAAG 1 cut(s) 222
Eco91I GGTNACC 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 987
EcoO109I RGGNCCY 2 cut(s) 570, 775
EcoO65I GGTNACC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 3 cut(s) 9, 148, 166
EcoT38I GRGCYC 2 cut(s) 574, 989
ErhI CCWWGG 3 cut(s) 9, 148, 166
Esp3I CGTCTC 1 cut(s) 623
FaeI CATG 2 cut(s) 13, 76
FaiI YATR 9 cut(s) 11, 51, 74, 96, 352, 416, 840, 1000, 1008
FalI AAGNNNNNCTT 2 cut(s) 673, 705
FaqI GGGAC 1 cut(s) 881
FatI CATG 2 cut(s) 9, 72
FbaI TGATCA 2 cut(s) 97, 721
FblI GTMKAC 1 cut(s) 670
Fnu4HI GCNGC 6 cut(s) 129, 132, 235, 238, 816, 965
FokI GGATG 6 cut(s) 87, 103, 334, 733, 1015, 1042
FriOI GRGCYC 2 cut(s) 574, 989
Fsp4HI GCNGC 6 cut(s) 129, 132, 235, 238, 816, 965
GlaI GCGC 4 cut(s) 127, 247, 718, 1011
GluI GCNGC 6 cut(s) 129, 132, 235, 238, 816, 965
GsaI CCCAGC 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 2 cut(s) 572, 776
HapII CCGG 4 cut(s) 111, 123, 207, 504
HhaI GCGC 4 cut(s) 128, 248, 719, 1012
Hin1II CATG 2 cut(s) 13, 76
Hin6I GCGC 4 cut(s) 126, 246, 717, 1010
HinP1I GCGC 4 cut(s) 126, 246, 717, 1010
HindIII AAGCTT 1 cut(s) 457
HinfI GANTC 3 cut(s) 409, 707, 743
HpaII CCGG 4 cut(s) 111, 123, 207, 504
HphI GGTGA 4 cut(s) 152, 374, 493, 1041
Hpy166II GTNNAC 2 cut(s) 45, 671
Hpy188I TCNGA 4 cut(s) 35, 202, 472, 991
Hpy188III TCNNGA 4 cut(s) 73, 227, 402, 725
Hpy8I GTNNAC 2 cut(s) 45, 671
HpyAV CCTTC 2 cut(s) 602, 617
HpyCH4III ACNGT 4 cut(s) 271, 286, 430, 731
HpyCH4IV ACGT 3 cut(s) 384, 582, 951
HpyCH4V TGCA 5 cut(s) 53, 466, 815, 842, 964
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 1016
HpyF3I CTNAG 5 cut(s) 188, 471, 753, 875, 1043
HpySE526I ACGT 3 cut(s) 384, 582, 951
Hsp92II CATG 2 cut(s) 13, 76
HspAI GCGC 4 cut(s) 126, 246, 717, 1010
Ksp22I TGATCA 2 cut(s) 97, 721
Kzo9I GATC 7 cut(s) 97, 474, 518, 721, 763, 823, 994
LmnI GCTCC 3 cut(s) 21, 512, 972
Lsp1109I GCAGC 6 cut(s) 140, 143, 246, 249, 827, 976
MaeII ACGT 3 cut(s) 384, 582, 951
MaeIII GTNAC 4 cut(s) 140, 331, 380, 481
MalI GATC 7 cut(s) 99, 476, 520, 723, 765, 825, 996
MboI GATC 7 cut(s) 97, 474, 518, 721, 763, 823, 994
MflI RGATCY 2 cut(s) 474, 518
MhlI GDGCHC 2 cut(s) 574, 989
MluCI AATT 2 cut(s) 956, 972
MlyI GAGTC 2 cut(s) 403, 737
MroXI GAANNNNTTC 1 cut(s) 942
MseI TTAA 2 cut(s) 864, 975
MslI CAYNNNNRTG 1 cut(s) 1054
MspA1I CMGCKG 1 cut(s) 258
MspI CCGG 4 cut(s) 111, 123, 207, 504
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 243, 1016
NcoI CCATGG 1 cut(s) 9
NdeII GATC 7 cut(s) 97, 474, 518, 721, 763, 823, 994
NlaIII CATG 2 cut(s) 13, 76
NlaIV GGNNCC 4 cut(s) 109, 164, 508, 572
NmuCI GTSAC 4 cut(s) 140, 331, 380, 481
PagI TCATGA 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 942
PfeI GAWTC 1 cut(s) 707
PkrI GCNGC 6 cut(s) 130, 133, 236, 239, 817, 966
PleI GAGTC 2 cut(s) 403, 737
PpsI GAGTC 2 cut(s) 403, 737
PshAI GACNNNNGTC 1 cut(s) 1038
Psp124BI GAGCTC 1 cut(s) 989
Psp6I CCWGG 1 cut(s) 103
PspEI GGTNACC 1 cut(s) 140
PspFI CCCAGC 1 cut(s) 248
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 4 cut(s) 109, 164, 508, 572
PspOMI GGGCCC 1 cut(s) 570
PspPI GGNCC 3 cut(s) 570, 571, 775
PsuI RGATCY 2 cut(s) 474, 518
RsaI GTAC 3 cut(s) 44, 697, 925
RsaNI GTAC 3 cut(s) 43, 696, 924
RseI CAYNNNNRTG 1 cut(s) 1054
SacI GAGCTC 1 cut(s) 989
SaqAI TTAA 2 cut(s) 864, 975
SatI GCNGC 6 cut(s) 129, 132, 235, 238, 816, 965
Sau3AI GATC 7 cut(s) 97, 474, 518, 721, 763, 823, 994
Sau96I GGNCC 3 cut(s) 570, 571, 775
SchI GAGTC 2 cut(s) 403, 737
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 2 cut(s) 574, 989
SfcI CTRYAG 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 1054
SmlI CTYRAG 3 cut(s) 225, 679, 932
SmoI CTYRAG 3 cut(s) 225, 679, 932
Sse9I AATT 2 cut(s) 956, 972
SsiI CCGC 1 cut(s) 258
SstI GAGCTC 1 cut(s) 989
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 3 cut(s) 9, 148, 166
TaaI ACNGT 4 cut(s) 271, 286, 430, 731
TaiI ACGT 3 cut(s) 387, 585, 954
TaqI TCGA 1 cut(s) 915
TasI AATT 2 cut(s) 956, 972
TatI WGTACW 2 cut(s) 42, 923
TfiI GAWTC 1 cut(s) 707
Tru1I TTAA 2 cut(s) 864, 975
Tru9I TTAA 2 cut(s) 864, 975
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 4 cut(s) 140, 331, 380, 481
TseI GCWGC 6 cut(s) 128, 131, 234, 237, 815, 964
Tsp45I GTSAC 4 cut(s) 140, 331, 380, 481
TspDTI ATGAA 4 cut(s) 61, 89, 621, 935
TspGWI ACGGA 1 cut(s) 713
TspRI CASTG 1 cut(s) 142
XapI RAATTY 1 cut(s) 956
XmiI GTMKAC 1 cut(s) 670
XmnI GAANNNNTTC 1 cut(s) 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.