root hair initiation
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G14760 AT2G14760 AT2G14760 AT4G33880 |
| fragaria_vesca | FvH4_2g04210 |
| malus_domestica | MD05G1098800.v1.1 MD10G1104600.v1.1 |
| prunus_persica | Prupe.8G143500_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr6g0253631 |
| rosa_laevigata | RLG00000014998 |
| rosa_multiflora | Rmu_sc0000362.1_g000001 Rmu_sc0002405.1_g000005 |
| rosa_roxburghii | Rroxscaffold_7G00211750 |
| rosa_rugosa | Rorug05G0545200 |
| rosa_samantha | Rh6AG060800 Rh6BG054600 Rh6CG054200 Rh6DG051700 |
| rosa_wichuraiana | Rw6G005400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 114 |
| AcuI | CTGAAG | 1 cut(s) | 26 |
| AfaI | GTAC | 1 cut(s) | 80 |
| AluBI | AGCT | 4 cut(s) | 40, 52, 60, 70 |
| AluI | AGCT | 4 cut(s) | 40, 52, 60, 70 |
| Ama87I | CYCGRG | 1 cut(s) | 5 |
| ApoI | RAATTY | 1 cut(s) | 114 |
| AvaI | CYCGRG | 1 cut(s) | 5 |
| BmeT110I | CYCGRG | 1 cut(s) | 5 |
| BseGI | GGATG | 2 cut(s) | 16, 81 |
| BsiHKCI | CYCGRG | 1 cut(s) | 5 |
| BsoBI | CYCGRG | 1 cut(s) | 5 |
| Bsp143I | GATC | 1 cut(s) | 45 |
| BspHI | TCATGA | 1 cut(s) | 118 |
| BssMI | GATC | 1 cut(s) | 45 |
| BstDEI | CTNAG | 1 cut(s) | 34 |
| BstF5I | GGATG | 2 cut(s) | 16, 81 |
| BstKTI | GATC | 1 cut(s) | 48 |
| BstMBI | GATC | 1 cut(s) | 45 |
| BtsCI | GGATG | 2 cut(s) | 16, 81 |
| CciI | TCATGA | 1 cut(s) | 118 |
| Csp6I | GTAC | 1 cut(s) | 79 |
| CviAII | CATG | 1 cut(s) | 119 |
| CviJI | RGCY | 4 cut(s) | 40, 52, 60, 70 |
| CviKI_1 | RGCY | 4 cut(s) | 40, 52, 60, 70 |
| CviQI | GTAC | 1 cut(s) | 79 |
| DdeI | CTNAG | 1 cut(s) | 34 |
| DpnI | GATC | 1 cut(s) | 47 |
| DpnII | GATC | 1 cut(s) | 45 |
| Eco57I | CTGAAG | 1 cut(s) | 26 |
| Eco88I | CYCGRG | 1 cut(s) | 5 |
| EcoRI | GAATTC | 1 cut(s) | 114 |
| FaeI | CATG | 1 cut(s) | 122 |
| FaiI | YATR | 2 cut(s) | 24, 120 |
| FatI | CATG | 1 cut(s) | 118 |
| FokI | GGATG | 2 cut(s) | 23, 88 |
| FspEI | CC | 5 cut(s) | 58, 84, 90, 96, 99 |
| Hin1II | CATG | 1 cut(s) | 122 |
| HincII | GTYRAC | 1 cut(s) | 94 |
| HindII | GTYRAC | 1 cut(s) | 94 |
| HindIII | AAGCTT | 1 cut(s) | 50 |
| HpaI | GTTAAC | 1 cut(s) | 94 |
| Hpy166II | GTNNAC | 1 cut(s) | 94 |
| Hpy188I | TCNGA | 2 cut(s) | 45, 64 |
| Hpy188III | TCNNGA | 2 cut(s) | 119, 135 |
| Hpy8I | GTNNAC | 1 cut(s) | 94 |
| HpyF3I | CTNAG | 1 cut(s) | 34 |
| Hsp92II | CATG | 1 cut(s) | 122 |
| KspAI | GTTAAC | 1 cut(s) | 94 |
| Kzo9I | GATC | 1 cut(s) | 45 |
| LmnI | GCTCC | 1 cut(s) | 88 |
| LpnPI | CCDG | 1 cut(s) | 99 |
| MalI | GATC | 1 cut(s) | 47 |
| MboI | GATC | 1 cut(s) | 45 |
| MluCI | AATT | 1 cut(s) | 114 |
| MseI | TTAA | 2 cut(s) | 56, 93 |
| NdeII | GATC | 1 cut(s) | 45 |
| NlaIII | CATG | 1 cut(s) | 122 |
| PaeR7I | CTCGAG | 1 cut(s) | 5 |
| PagI | TCATGA | 1 cut(s) | 118 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 87 |
| PspXI | VCTCGAGB | 1 cut(s) | 5 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 14, 46 |
| RsaI | GTAC | 1 cut(s) | 80 |
| RsaNI | GTAC | 1 cut(s) | 79 |
| SaqAI | TTAA | 2 cut(s) | 56, 93 |
| Sau3AI | GATC | 1 cut(s) | 45 |
| SetI | ASST | 4 cut(s) | 42, 54, 62, 72 |
| Sfr274I | CTCGAG | 1 cut(s) | 5 |
| SgeI | CNNG | 5 cut(s) | 17, 19, 61, 98, 131 |
| SlaI | CTCGAG | 1 cut(s) | 5 |
| SmlI | CTYRAG | 1 cut(s) | 5 |
| SmoI | CTYRAG | 1 cut(s) | 5 |
| Sse9I | AATT | 1 cut(s) | 114 |
| TaqI | TCGA | 1 cut(s) | 6 |
| TasI | AATT | 1 cut(s) | 114 |
| Tru1I | TTAA | 2 cut(s) | 56, 93 |
| Tru9I | TTAA | 2 cut(s) | 56, 93 |
| TspDTI | ATGAA | 1 cut(s) | 107 |
| TspGWI | ACGGA | 1 cut(s) | 114 |
| XapI | RAATTY | 1 cut(s) | 114 |
| XhoI | CTCGAG | 1 cut(s) | 5 |