MD10G1104600.v1.1
BHLH Family

Transcription factor bHLH84-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0011699
Physical Location & Seq
Forward (+)
17064993 .. 17066961
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1104600.v1.1.491

Sequence Viewer

Length: 978 bp
ATGGAATCTGCAGCAGCTATTGCAAATGGTGGATGGAGTTCACTTGGTGAAATGTACTCCTCTGATGAGGAGGCAGAGTTCATGTCCCAGTTGCTCGCTAACTGTTGCGTCACAAATGAGATGAATGAGGCTTCAAGCTCAGCAATCCCATTTGCAATTTGTCCTAGCTATGATTTTTCAAAATCTAACATGGAAGGCATTTATCAAGGTTCACAATACTCTTCAGAAATTGCTAATCTTTATTTTTCAAATGGTAATGCTTATATTATGAGCAATAATGAAACAAACCACTACACCGGTAATCCTAACCATATTATGGAAACAAGTTACCACAGCTCAGAAGCATTTCGTCCGCCGGATGCCAATGCTACCAACTTGATTCTCTTTCAAGGCAAAGAATATGGCATGGATCATCACCAAGAACTAAGCAATGTCAATATTGAAAACCAGCCGGGAGCTGCTATTTATGAAAAGCTTTTGCAGCTTAATAGGGAGTCTGATCATGAGATGACGATATGGGAACCTGCAATGGAAAATGTAGTTATGGTTTCCGAAGGTTCTAAGAAAAGGCCTTGCAGTTCAGTAGATGTGCAAAAGAAGAGGACTGTGAAGGCGAAGAAGGGCCAAAAGGCAGTGTTAAGGGGAAACGTTGAAGATAATGATATAACCACCAAAGGGCAGAGCTCAAGCAGTAGCTGCTCAGTGGACGATGACTCCATTAATGCTTCTCATCAGGATCTGAGTGGAGGTGTGAGTACTTCGAGCTTGAGTCCAAAATGGAAAAAAGCCAGTAGGGGATCAGCAACTGATTCCCAAGGCATATATGCAAGGGTTGATATCAGCACAATGCTTGAGGAGGCTGTCCAGTATGTGAAGTTCTTACAGCTTCAGATAAAGCTCATAAGCTCGGATGATATGTGGATGTTTGCTCCTATCGCTTACAATGGAATAAACATTGGAATCGACTTAAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

326

Amino Acids

35.67

Weight (kDa)

4.78

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011699)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14760 AT2G14760 AT2G14760 AT4G33880
fragaria_vesca FvH4_2g04210
malus_domestica MD05G1098800.v1.1 MD10G1104600.v1.1
prunus_persica Prupe.8G143500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0253631
rosa_laevigata RLG00000014998
rosa_multiflora Rmu_sc0000362.1_g000001 Rmu_sc0002405.1_g000005
rosa_roxburghii Rroxscaffold_7G00211750
rosa_rugosa Rorug05G0545200
rosa_samantha Rh6AG060800 Rh6BG054600 Rh6CG054200 Rh6DG051700
rosa_wichuraiana Rw6G005400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 532
AccB7I CCANNNNNTGG 1 cut(s) 316
AciI CCGC 1 cut(s) 353
AclI AACGTT 1 cut(s) 648
AclWI GGATC 3 cut(s) 417, 744, 805
AcsI RAATTY 1 cut(s) 970
AcuI CTGAAG 2 cut(s) 207, 872
AdeI CACNNNGTG 1 cut(s) 47
AfaI GTAC 2 cut(s) 56, 757
AfiI CCNNNNNNNGG 2 cut(s) 316, 675
AgeI ACCGGT 1 cut(s) 296
AgsI TTSAA 6 cut(s) 135, 180, 249, 389, 443, 653
AloI GAACNNNNNNTCC 2 cut(s) 62, 94
Alw21I GWGCWC 1 cut(s) 686
AlwI GGATC 3 cut(s) 417, 744, 805
AlwNI CAGNNNCTG 3 cut(s) 696, 739, 806
AoxI GGCC 2 cut(s) 569, 622
ApeKI GCWGC 5 cut(s) 11, 14, 458, 481, 696
ApoI RAATTY 1 cut(s) 970
AseI ATTAAT 1 cut(s) 720
AsiGI ACCGGT 1 cut(s) 296
Asp700I GAANNNNTTC 1 cut(s) 345
AspS9I GGNCC 1 cut(s) 622
AsuC2I CCSGG 1 cut(s) 453
AsuHPI GGTGA 2 cut(s) 59, 407
BanII GRGCYC 1 cut(s) 686
Bbv12I GWGCWC 1 cut(s) 686
BbvI GCAGC 5 cut(s) 23, 26, 445, 493, 683
BccI CCATC 1 cut(s) 27
BclI TGATCA 1 cut(s) 499
BcnI CCSGG 1 cut(s) 453
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 9
BfuAI ACCTGC 1 cut(s) 532
BisI GCNGC 5 cut(s) 12, 15, 459, 482, 697
BlpI GCTNAGC 1 cut(s) 139
BlsI GCNGC 5 cut(s) 13, 16, 460, 483, 698
BmcAI AGTACT 1 cut(s) 757
Bme1390I CCNGG 1 cut(s) 453
BmgT120I GGNCC 1 cut(s) 622
BmiI GGNNCC 1 cut(s) 522
BmrFI CCNGG 1 cut(s) 453
BmrI ACTGGG 1 cut(s) 82
BmsI GCATC 1 cut(s) 349
BmuI ACTGGG 1 cut(s) 82
Bpu1102I GCTNAGC 1 cut(s) 139
BpuEI CTTGAG 3 cut(s) 670, 787, 872
BpuMI CCSGG 1 cut(s) 453
BsaJI CCNNGG 1 cut(s) 814
BsaWI WCCGGW 1 cut(s) 296
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 698, 728
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 675
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 3 cut(s) 88, 789, 865
Bse3DI GCAATG 2 cut(s) 436, 534
BseDI CCNNGG 1 cut(s) 814
BseGI GGATG 4 cut(s) 38, 364, 916, 927
BseLI CCNNNNNNNGG 2 cut(s) 316, 675
BseMI GCAATG 2 cut(s) 436, 534
BseMII CTCAG 4 cut(s) 153, 351, 714, 731
BseNI ACTGG 3 cut(s) 88, 789, 865
BseRI GAGGAG 3 cut(s) 49, 83, 869
BseXI GCAGC 5 cut(s) 23, 26, 445, 493, 683
BshFI GGCC 2 cut(s) 571, 624
BshTI ACCGGT 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 686
BsiSI CCGG 3 cut(s) 297, 356, 452
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 2 cut(s) 316, 675
BsmFI GGGAC 1 cut(s) 70
BsnI GGCC 2 cut(s) 571, 624
Bsp1286I GDGCHC 1 cut(s) 686
Bsp143I GATC 4 cut(s) 409, 499, 736, 797
Bsp1720I GCTNAGC 1 cut(s) 139
BspACI CCGC 1 cut(s) 353
BspANI GGCC 2 cut(s) 571, 624
BspCNI CTCAG 4 cut(s) 152, 350, 713, 732
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 1 cut(s) 522
BspMAI CTGCAG 1 cut(s) 13
BspMI ACCTGC 1 cut(s) 532
BspPI GGATC 3 cut(s) 417, 744, 805
BsrDI GCAATG 2 cut(s) 436, 534
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 3 cut(s) 88, 789, 865
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 814
BssMI GATC 4 cut(s) 409, 499, 736, 797
BssT1I CCWWGG 1 cut(s) 814
Bst4CI ACNGT 2 cut(s) 104, 607
Bst6I CTCTTC 2 cut(s) 226, 593
BstAPI GCANNNNNTGC 2 cut(s) 20, 696
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 6 cut(s) 139, 337, 425, 561, 700, 740
BstF5I GGATG 4 cut(s) 38, 364, 916, 927
BstKTI GATC 4 cut(s) 412, 502, 739, 800
BstMBI GATC 4 cut(s) 409, 499, 736, 797
BstMWI GCNNNNNNNGC 4 cut(s) 20, 481, 696, 935
BstSCI CCNGG 1 cut(s) 451
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 5 cut(s) 23, 26, 445, 493, 683
BstX2I RGATCY 1 cut(s) 736
BstYI RGATCY 1 cut(s) 736
BsuRI GGCC 2 cut(s) 571, 624
BtsCI GGATG 4 cut(s) 38, 364, 916, 927
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 2 cut(s) 639, 708
BveI ACCTGC 1 cut(s) 532
Cac8I GCNNGC 1 cut(s) 96
CaiI CAGNNNCTG 3 cut(s) 696, 739, 806
CciI TCATGA 1 cut(s) 502
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 622
CseI GACGC 1 cut(s) 97
Csp6I GTAC 2 cut(s) 55, 756
CspAI ACCGGT 1 cut(s) 296
CviAII CATG 4 cut(s) 82, 190, 406, 503
CviQI GTAC 2 cut(s) 55, 756
DdeI CTNAG 6 cut(s) 139, 337, 425, 561, 700, 740
DpnI GATC 4 cut(s) 411, 501, 738, 799
DpnII GATC 4 cut(s) 409, 499, 736, 797
DraIII CACNNNGTG 1 cut(s) 47
Eam1104I CTCTTC 2 cut(s) 226, 593
EarI CTCTTC 2 cut(s) 226, 593
EciI GGCGGA 1 cut(s) 342
Ecl136II GAGCTC 1 cut(s) 684
Eco130I CCWWGG 1 cut(s) 814
Eco147I AGGCCT 1 cut(s) 571
Eco24I GRGCYC 1 cut(s) 686
Eco32I GATATC 1 cut(s) 838
Eco53kI GAGCTC 1 cut(s) 684
Eco57I CTGAAG 2 cut(s) 207, 872
EcoICRI GAGCTC 1 cut(s) 684
EcoRV GATATC 1 cut(s) 838
EcoT14I CCWWGG 1 cut(s) 814
EcoT38I GRGCYC 1 cut(s) 686
ErhI CCWWGG 1 cut(s) 814
FaeI CATG 4 cut(s) 85, 193, 409, 506
FaqI GGGAC 1 cut(s) 70
FatI CATG 4 cut(s) 81, 189, 405, 502
FbaI TGATCA 1 cut(s) 499
Fnu4HI GCNGC 5 cut(s) 12, 15, 459, 482, 697
FokI GGATG 4 cut(s) 45, 371, 923, 934
FriOI GRGCYC 1 cut(s) 686
Fsp4HI GCNGC 5 cut(s) 12, 15, 459, 482, 697
FspBI CTAG 1 cut(s) 165
GluI GCNGC 5 cut(s) 12, 15, 459, 482, 697
HaeIII GGCC 2 cut(s) 571, 624
HapII CCGG 3 cut(s) 297, 356, 452
HgaI GACGC 1 cut(s) 97
Hin1II CATG 4 cut(s) 85, 193, 409, 506
HindIII AAGCTT 1 cut(s) 473
HinfI GANTC 7 cut(s) 5, 379, 494, 713, 769, 809, 960
HpaII CCGG 3 cut(s) 297, 356, 452
HphI GGTGA 2 cut(s) 59, 407
Hpy166II GTNNAC 3 cut(s) 41, 212, 706
Hpy188I TCNGA 8 cut(s) 64, 226, 340, 499, 553, 741, 891, 910
Hpy188III TCNNGA 3 cut(s) 503, 734, 975
Hpy8I GTNNAC 3 cut(s) 41, 212, 706
HpyAV CCTTC 4 cut(s) 188, 548, 604, 613
HpyCH4III ACNGT 2 cut(s) 104, 607
HpyCH4IV ACGT 1 cut(s) 648
HpyCH4V TGCA 8 cut(s) 11, 23, 155, 481, 527, 576, 592, 827
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 481, 696, 935
HpyF3I CTNAG 6 cut(s) 139, 337, 425, 561, 700, 740
HpySE526I ACGT 1 cut(s) 648
Hsp92II CATG 4 cut(s) 85, 193, 409, 506
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 4 cut(s) 409, 499, 736, 797
LmnI GCTCC 2 cut(s) 455, 934
LpnPI CCDG 9 cut(s) 101, 310, 369, 461, 465, 537, 719, 802, 878
Lsp1109I GCAGC 5 cut(s) 23, 26, 445, 493, 683
LweI GCATC 1 cut(s) 349
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 648
MaeIII GTNAC 2 cut(s) 109, 326
MalI GATC 4 cut(s) 411, 501, 738, 799
MboI GATC 4 cut(s) 409, 499, 736, 797
MboII GAAGA 4 cut(s) 213, 610, 628, 665
MflI RGATCY 1 cut(s) 736
MhlI GDGCHC 1 cut(s) 686
MluCI AATT 3 cut(s) 156, 228, 970
MlyI GAGTC 3 cut(s) 503, 707, 778
MnlI CCTC 8 cut(s) 61, 64, 70, 121, 594, 740, 847, 850
MroXI GAANNNNTTC 1 cut(s) 345
MseI TTAA 4 cut(s) 486, 638, 720, 968
MspI CCGG 3 cut(s) 297, 356, 452
MspR9I CCNGG 1 cut(s) 453
MwoI GCNNNNNNNGC 4 cut(s) 20, 481, 696, 935
NciI CCSGG 1 cut(s) 453
NdeII GATC 4 cut(s) 409, 499, 736, 797
NlaIII CATG 4 cut(s) 85, 193, 409, 506
NlaIV GGNNCC 1 cut(s) 522
NmuCI GTSAC 1 cut(s) 109
PagI TCATGA 1 cut(s) 502
PceI AGGCCT 1 cut(s) 571
PdmI GAANNNNTTC 1 cut(s) 345
PfeI GAWTC 4 cut(s) 5, 379, 809, 960
PflMI CCANNNNNTGG 1 cut(s) 316
PinAI ACCGGT 1 cut(s) 296
PkrI GCNGC 5 cut(s) 13, 16, 460, 483, 698
PleI GAGTC 3 cut(s) 502, 707, 777
PpsI GAGTC 3 cut(s) 502, 707, 777
PshBI ATTAAT 1 cut(s) 720
Psp124BI GAGCTC 1 cut(s) 686
Psp1406I AACGTT 1 cut(s) 648
PspN4I GGNNCC 1 cut(s) 522
PspPI GGNCC 1 cut(s) 622
PsrI GAACNNNNNNTAC 2 cut(s) 860, 892
PstI CTGCAG 1 cut(s) 13
PstNI CAGNNNCTG 3 cut(s) 696, 739, 806
PsuI RGATCY 1 cut(s) 736
RsaI GTAC 2 cut(s) 56, 757
RsaNI GTAC 2 cut(s) 55, 756
SacI GAGCTC 1 cut(s) 686
SaqAI TTAA 4 cut(s) 486, 638, 720, 968
SatI GCNGC 5 cut(s) 12, 15, 459, 482, 697
Sau3AI GATC 4 cut(s) 409, 499, 736, 797
Sau96I GGNCC 1 cut(s) 622
ScaI AGTACT 1 cut(s) 757
SchI GAGTC 3 cut(s) 503, 707, 778
ScrFI CCNGG 1 cut(s) 453
SduI GDGCHC 1 cut(s) 686
SfaNI GCATC 1 cut(s) 349
SfcI CTRYAG 1 cut(s) 9
SmlI CTYRAG 3 cut(s) 685, 766, 851
SmoI CTYRAG 3 cut(s) 685, 766, 851
Sse9I AATT 3 cut(s) 156, 228, 970
SseBI AGGCCT 1 cut(s) 571
SsiI CCGC 1 cut(s) 353
SspI AATATT 1 cut(s) 439
SspMI CTAG 1 cut(s) 165
SstI GAGCTC 1 cut(s) 686
StuI AGGCCT 1 cut(s) 571
StyD4I CCNGG 1 cut(s) 451
StyI CCWWGG 1 cut(s) 814
TaaI ACNGT 2 cut(s) 104, 607
TaiI ACGT 1 cut(s) 651
TaqI TCGA 2 cut(s) 761, 963
TasI AATT 3 cut(s) 156, 228, 970
TatI WGTACW 2 cut(s) 54, 755
TfiI GAWTC 4 cut(s) 5, 379, 809, 960
Tru1I TTAA 4 cut(s) 486, 638, 720, 968
Tru9I TTAA 4 cut(s) 486, 638, 720, 968
TscAI CASTG 2 cut(s) 639, 708
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 5 cut(s) 11, 14, 458, 481, 696
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 4 cut(s) 70, 137, 294, 483
TspRI CASTG 2 cut(s) 639, 708
Van91I CCANNNNNTGG 1 cut(s) 316
VspI ATTAAT 1 cut(s) 720
XapI RAATTY 1 cut(s) 970
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 1 cut(s) 165
ZrmI AGTACT 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.