RLG00000014998
BHLH Family

Transcription factor bHLH84-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011699
Physical Location & Seq
Reverse (-)
60415608 .. 60416849
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014998

Sequence Viewer

Length: 804 bp
ATGGAAGCTCTAGCATTTATTCCAGAGTTCGAGGACGAAGATTTGATCATTTCCCAGTTGCTTGCTAATTACTGTTCTGTCACAAATGACCTGAATCATCAGGCTTCAATCTCTCAAATCCCATTTGCAAATTGTCCTAGCAGCCATGAATGTTCAGCAGCAAAGAACATGGAAGGCATTGCTAATCTTTATTCTCGCAGAATTATGGCAACAAATTACCATAACCCTGAGCCTTTTCATCCCTGGGATGCCAGCAGTACCACCAACTTTTTTTTCAGTCAAATTGAAGAAAATATAGGCATGGACCAAGTAATGAGAAATCGCAACGTGGAAGATCATGAAGTCGTGTCTGAGAATTCTAAGAAAAGGTCTTGCAGTACTTCTGTAGATCATGTCCAGAAGAACAAGAGGAATATGAAGTCAAAGAAGACTGATCAAAAGCCAGTCTTAACTAGAAACATTGCAGATAGTTGCAGCTCAGGGGATGATGAACCCATGAATGCTAATTCTAACCTGCAGGATTTGAGACCAAAAGCAAGAATCAGTAGGGGATTAGCAACTGATGCACAAAGCACATATGCAAAGAAAAGAAGAGATAAAATAAATGCAAGGCTGAGAATTCTGCAGAATCTTGTACCTAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGATGCTGTTGAGTATGTGAAGTTCTTAGAGCTTCAGATCAAGCTTTTAAGCTCTGATGAGCTGTGGATGTACGCTCCTGTCGTTAACAACGGAATAGGCATTGGAATTCATGACTTGCTCAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

268

Amino Acids

30.08

Weight (kDa)

5.83

Isoelectric Point (pI)

57.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 195 - 235 5.5e-08 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 195 - 242 9.5e-07 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011699)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14760 AT2G14760 AT2G14760 AT4G33880
fragaria_vesca FvH4_2g04210
malus_domestica MD05G1098800.v1.1 MD10G1104600.v1.1
prunus_persica Prupe.8G143500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0253631
rosa_laevigata RLG00000014998
rosa_multiflora Rmu_sc0000362.1_g000001 Rmu_sc0002405.1_g000005
rosa_roxburghii Rroxscaffold_7G00211750
rosa_rugosa Rorug05G0545200
rosa_samantha Rh6AG060800 Rh6BG054600 Rh6CG054200 Rh6DG051700
rosa_wichuraiana Rw6G005400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 522
AcsI RAATTY 3 cut(s) 355, 618, 780
AcuI CTGAAG 1 cut(s) 692
AfaI GTAC 4 cut(s) 259, 379, 636, 746
AgsI TTSAA 2 cut(s) 108, 287
AjnI CCWGG 1 cut(s) 242
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 7 cut(s) 8, 477, 706, 718, 726, 736, 798
AluI AGCT 7 cut(s) 8, 477, 706, 718, 726, 736, 798
Alw26I GTCTC 1 cut(s) 520
ApeKI GCWGC 3 cut(s) 141, 158, 474
ApoI RAATTY 3 cut(s) 355, 618, 780
AspS9I GGNCC 1 cut(s) 304
AvaII GGWCC 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 434
BbvI GCAGC 3 cut(s) 153, 170, 486
BciT130I CCWGG 1 cut(s) 244
BclI TGATCA 2 cut(s) 45, 433
BcoDI GTCTC 1 cut(s) 520
BfaI CTAG 3 cut(s) 11, 138, 453
BfmI CTRYAG 3 cut(s) 384, 515, 623
BfuAI ACCTGC 1 cut(s) 522
BisI GCNGC 3 cut(s) 142, 159, 475
BlpI GCTNAGC 1 cut(s) 794
BlsI GCNGC 3 cut(s) 143, 160, 476
BmcAI AGTACT 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 244
Bme18I GGWCC 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 244
BmrI ACTGGG 1 cut(s) 49
BmsI GCATC 3 cut(s) 238, 553, 667
BmuI ACTGGG 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 434
Bpu10I CCTNAGC 2 cut(s) 228, 478
Bpu1102I GCTNAGC 1 cut(s) 794
BpuEI CTTGAG 1 cut(s) 692
BsaI GGTCTC 1 cut(s) 520
BsaJI CCNNGG 2 cut(s) 242, 243
Bse1I ACTGG 2 cut(s) 55, 443
Bse3DI GCAATG 2 cut(s) 177, 459
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 2 cut(s) 242, 243
BseGI GGATG 5 cut(s) 238, 253, 490, 682, 747
BseMI GCAATG 2 cut(s) 177, 459
BseMII CTCAG 4 cut(s) 219, 342, 492, 605
BseNI ACTGG 2 cut(s) 55, 443
BseXI GCAGC 3 cut(s) 153, 170, 486
BsmAI GTCTC 1 cut(s) 520
BsmI GAATGC 1 cut(s) 505
Bso31I GGTCTC 1 cut(s) 520
Bsp143I GATC 5 cut(s) 45, 334, 388, 433, 711
Bsp1720I GCTNAGC 1 cut(s) 794
BspCNI CTCAG 4 cut(s) 220, 343, 491, 606
BspHI TCATGA 2 cut(s) 337, 784
BspMAI CTGCAG 2 cut(s) 519, 627
BspMI ACCTGC 1 cut(s) 522
BspTNI GGTCTC 1 cut(s) 520
BsrDI GCAATG 2 cut(s) 177, 459
BsrI ACTGG 2 cut(s) 55, 443
BssECI CCNNGG 2 cut(s) 242, 243
BssMI GATC 5 cut(s) 45, 334, 388, 433, 711
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 586
BstAPI GCANNNNNTGC 1 cut(s) 563
BstC8I GCNNGC 2 cut(s) 63, 253
BstDEI CTNAG 7 cut(s) 228, 351, 360, 478, 614, 700, 794
BstF5I GGATG 5 cut(s) 238, 253, 490, 682, 747
BstKTI GATC 5 cut(s) 48, 337, 391, 436, 714
BstMAI GTCTC 1 cut(s) 520
BstMBI GATC 5 cut(s) 45, 334, 388, 433, 711
BstMWI GCNNNNNNNGC 1 cut(s) 563
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 242
BstSFI CTRYAG 3 cut(s) 384, 515, 623
BstV1I GCAGC 3 cut(s) 153, 170, 486
BstV2I GAAGAC 1 cut(s) 434
BtsCI GGATG 5 cut(s) 238, 253, 490, 682, 747
BveI ACCTGC 1 cut(s) 522
Cac8I GCNNGC 2 cut(s) 63, 253
CciI TCATGA 2 cut(s) 337, 784
Cfr13I GGNCC 1 cut(s) 304
Csp6I GTAC 4 cut(s) 258, 378, 635, 745
CviAII CATG 7 cut(s) 146, 169, 301, 338, 392, 496, 785
CviQI GTAC 4 cut(s) 258, 378, 635, 745
DdeI CTNAG 7 cut(s) 228, 351, 360, 478, 614, 700, 794
DpnI GATC 5 cut(s) 47, 336, 390, 435, 713
DpnII GATC 5 cut(s) 45, 334, 388, 433, 711
Eam1104I CTCTTC 1 cut(s) 586
EarI CTCTTC 1 cut(s) 586
Eco31I GGTCTC 1 cut(s) 520
Eco32I GATATC 1 cut(s) 658
Eco47I GGWCC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 692
EcoRI GAATTC 3 cut(s) 355, 618, 780
EcoRII CCWGG 1 cut(s) 242
EcoRV GATATC 1 cut(s) 658
FaeI CATG 7 cut(s) 149, 172, 304, 341, 395, 499, 788
FalI AAGNNNNNCTT 2 cut(s) 431, 463
FatI CATG 7 cut(s) 145, 168, 300, 337, 391, 495, 784
FauNDI CATATG 1 cut(s) 577
FbaI TGATCA 2 cut(s) 45, 433
Fnu4HI GCNGC 3 cut(s) 142, 159, 475
FokI GGATG 5 cut(s) 225, 260, 497, 689, 754
Fsp4HI GCNGC 3 cut(s) 142, 159, 475
FspBI CTAG 3 cut(s) 11, 138, 453
GluI GCNGC 3 cut(s) 142, 159, 475
Hin1II CATG 7 cut(s) 149, 172, 304, 341, 395, 499, 788
HincII GTYRAC 1 cut(s) 760
HindII GTYRAC 1 cut(s) 760
HindIII AAGCTT 1 cut(s) 716
HinfI GANTC 3 cut(s) 94, 540, 628
HpaI GTTAAC 1 cut(s) 760
Hpy166II GTNNAC 1 cut(s) 760
Hpy188I TCNGA 3 cut(s) 352, 711, 730
Hpy188III TCNNGA 5 cut(s) 23, 338, 397, 785, 801
Hpy8I GTNNAC 1 cut(s) 760
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 9 cut(s) 128, 375, 464, 474, 517, 566, 581, 608, 625
HpyF10VI GCNNNNNNNGC 1 cut(s) 563
HpyF3I CTNAG 7 cut(s) 228, 351, 360, 478, 614, 700, 794
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 7 cut(s) 149, 172, 304, 341, 395, 499, 788
Ksp22I TGATCA 2 cut(s) 45, 433
KspAI GTTAAC 1 cut(s) 760
Kzo9I GATC 5 cut(s) 45, 334, 388, 433, 711
LmnI GCTCC 1 cut(s) 754
Lsp1109I GCAGC 3 cut(s) 153, 170, 486
LweI GCATC 3 cut(s) 238, 553, 667
MaeI CTAG 3 cut(s) 11, 138, 453
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 79
MalI GATC 5 cut(s) 47, 336, 390, 435, 713
MboI GATC 5 cut(s) 45, 334, 388, 433, 711
MboII GAAGA 6 cut(s) 50, 299, 344, 412, 439, 603
MluCI AATT 9 cut(s) 67, 130, 201, 214, 282, 355, 505, 618, 780
MnlI CCTC 3 cut(s) 25, 402, 667
MseI TTAA 3 cut(s) 449, 722, 759
MspR9I CCNGG 1 cut(s) 244
Mva1269I GAATGC 1 cut(s) 505
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 563
NdeI CATATG 1 cut(s) 577
NdeII GATC 5 cut(s) 45, 334, 388, 433, 711
NlaIII CATG 7 cut(s) 149, 172, 304, 341, 395, 499, 788
NmuCI GTSAC 1 cut(s) 79
PagI TCATGA 2 cut(s) 337, 784
PasI CCCWGGG 1 cut(s) 243
PcsI WCGNNNNNNNCGW 1 cut(s) 753
PctI GAATGC 1 cut(s) 505
PfeI GAWTC 3 cut(s) 94, 540, 628
PkrI GCNGC 3 cut(s) 143, 160, 476
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PspPI GGNCC 1 cut(s) 304
PsrI GAACNNNNNNTAC 2 cut(s) 680, 712
PstI CTGCAG 2 cut(s) 519, 627
RsaI GTAC 4 cut(s) 259, 379, 636, 746
RsaNI GTAC 4 cut(s) 258, 378, 635, 745
SaqAI TTAA 3 cut(s) 449, 722, 759
SatI GCNGC 3 cut(s) 142, 159, 475
Sau3AI GATC 5 cut(s) 45, 334, 388, 433, 711
Sau96I GGNCC 1 cut(s) 304
SbfI CCTGCAGG 1 cut(s) 519
ScaI AGTACT 1 cut(s) 379
ScrFI CCNGG 1 cut(s) 244
SdaI CCTGCAGG 1 cut(s) 519
SfaNI GCATC 3 cut(s) 238, 553, 667
SfcI CTRYAG 3 cut(s) 384, 515, 623
SinI GGWCC 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 671
SmoI CTYRAG 1 cut(s) 671
Sse8387I CCTGCAGG 1 cut(s) 519
Sse9I AATT 9 cut(s) 67, 130, 201, 214, 282, 355, 505, 618, 780
SspMI CTAG 3 cut(s) 11, 138, 453
StyD4I CCNGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 74
TaiI ACGT 1 cut(s) 330
TaqI TCGA 1 cut(s) 30
TasI AATT 9 cut(s) 67, 130, 201, 214, 282, 355, 505, 618, 780
TatI WGTACW 1 cut(s) 377
TfiI GAWTC 3 cut(s) 94, 540, 628
Tru1I TTAA 3 cut(s) 449, 722, 759
Tru9I TTAA 3 cut(s) 449, 722, 759
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 3 cut(s) 141, 158, 474
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 7 cut(s) 162, 227, 354, 431, 504, 512, 773
TspGWI ACGGA 1 cut(s) 780
VpaK11BI GGWCC 1 cut(s) 304
XapI RAATTY 3 cut(s) 355, 618, 780
XspI CTAG 3 cut(s) 11, 138, 453
ZrmI AGTACT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.