Prupe.8G143500_v2.0.a1
BHLH Family

Transcription factor bHLH84-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0011699
Physical Location & Seq
Forward (+)
16041802 .. 16044444
2643 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G143500.1

Sequence Viewer

Length: 1074 bp
ATGGACAATGCTGGATGGAGCTCAAATGGTGGAATGTACACCTCTGATGAGGAGGCAGATTTCATGTCTCAGTTGCTTGCTAACTGTTCTGTCACAAATGAGATGAATGAGGCTTCAAGCTCTTCAATCCCATTTGCAATTTGTCCAAGCCATGGATATTCAACAACTAACAGGGAAGACATTGATCAAGGATCGCATTATTATTCAGATTTTGCTAATCTCTATTTTTCAAATGGGATTGATACTTATGGTACTGCCAATAATGGAAACTACTACACCAGTGACTCTCACCAAATTATGCCAACAAATTACCATAACTCCGAGACGTCTCGATGTCTTTGGGATGCCAATGGTGTCAACTTGTTCCTCAGTCAAGGTGAACAATTCGGCATGGATCATCACCAAGAATTGAGAAATGGCAATGTGGAAGAGCACTCTAACACAAACCAGACAGGAGCTGCTTTTTCTGAAAATCTTCTGCAGCTTAAAAGGGAATCTCAGCATGAGATGAGAATAAGGGAACCGGAGATGGAAATTGAAGTTATGGTGCCTGAGAATTCCAAGAAAAGGCCTTGCAGTTCAGTAGAAGTTCAAAAGAAGAAGAGGAATGTGAAGTCGAAGAAGGGTCAGAAGCCGGTCTTAACTGGAGACATTGAAGATAATGATGCTAGCACCAAAGGGCAGAGCTCAAGCAGTACTAGCTGCTCAGGGGATGAGGACTCCAATGCTTCTCATCAGGATCTGAGTGGAGGCGTGAGCCCTTCAAGCTTTAGTCCAAAAGGGCTTGAAGATCTGAACTTGAATTGCAAAAAAAAGGCCAGTAGGGGATCAGCAACTGATTCCCAAAGCATATATGCAAGGAAAAGAAGAGAAAAAATAAACGAGAGGCTGAGAATTTTGCAGAACCTTGTACCTAATGGCACAAAGGTTGATATCAGCACCATGCTTGAGGAGGCTGTCCAGTATGTGAAGTTCTTACAGCTTCAGATCAAGCTCTCAAGCTCTGATGATATGTGGATGTATGCTCCTATCGTTCACAATGGAATAAACATCGGAATTGACTTGAACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

358

Amino Acids

39.68

Weight (kDa)

5.2

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011699)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14760 AT2G14760 AT2G14760 AT4G33880
fragaria_vesca FvH4_2g04210
malus_domestica MD05G1098800.v1.1 MD10G1104600.v1.1
prunus_persica Prupe.8G143500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0253631
rosa_laevigata RLG00000014998
rosa_multiflora Rmu_sc0000362.1_g000001 Rmu_sc0002405.1_g000005
rosa_roxburghii Rroxscaffold_7G00211750
rosa_rugosa Rorug05G0545200
rosa_samantha Rh6AG060800 Rh6BG054600 Rh6CG054200 Rh6DG051700
rosa_wichuraiana Rw6G005400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 329
AccB1I GGYRCC 1 cut(s) 547
AccB7I CCANNNNNTGG 1 cut(s) 152
AclWI GGATC 4 cut(s) 199, 402, 747, 835
AcsI RAATTY 2 cut(s) 556, 894
AcuI CTGAAG 1 cut(s) 968
AcyI GRCGYC 1 cut(s) 326
AfaI GTAC 4 cut(s) 38, 253, 697, 912
AfiI CCNNNNNNNGG 2 cut(s) 152, 567
Alw21I GWGCWC 3 cut(s) 23, 435, 689
Alw26I GTCTC 4 cut(s) 72, 317, 333, 642
AlwI GGATC 4 cut(s) 199, 402, 747, 835
AlwNI CAGNNNCTG 3 cut(s) 458, 742, 836
AoxI GGCC 2 cut(s) 569, 816
ApeKI GCWGC 3 cut(s) 458, 481, 702
ApoI RAATTY 2 cut(s) 556, 894
Asp700I GAANNNNTTC 1 cut(s) 474
AsuHPI GGTGA 3 cut(s) 281, 389, 392
AsuNHI GCTAGC 1 cut(s) 668
BanI GGYRCC 1 cut(s) 547
BanII GRGCYC 3 cut(s) 23, 689, 761
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 3 cut(s) 23, 435, 689
BbvI GCAGC 3 cut(s) 445, 493, 689
BccI CCATC 2 cut(s) 9, 523
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 4 cut(s) 72, 317, 333, 642
BfaI CTAG 2 cut(s) 669, 699
BfmI CTRYAG 1 cut(s) 479
BglII AGATCT 1 cut(s) 790
BisI GCNGC 3 cut(s) 459, 482, 703
BlsI GCNGC 3 cut(s) 460, 483, 704
BmcAI AGTACT 1 cut(s) 697
BmiI GGNNCC 2 cut(s) 522, 549
BmsI GCATC 2 cut(s) 334, 655
BmtI GCTAGC 1 cut(s) 672
BpiI GAAGAC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 666
Bpu10I CCTNAGC 1 cut(s) 706
BpuEI CTTGAG 3 cut(s) 673, 968, 982
BsaHI GRCGYC 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 151
BsaWI WCCGGW 1 cut(s) 523
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 567
Bse118I RCCGGY 1 cut(s) 634
Bse1I ACTGG 4 cut(s) 279, 649, 819, 961
Bse3DI GCAATG 1 cut(s) 427
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 4 cut(s) 20, 349, 718, 1023
BseLI CCNNNNNNNGG 2 cut(s) 152, 567
BseMI GCAATG 1 cut(s) 427
BseMII CTCAG 7 cut(s) 83, 382, 512, 543, 720, 734, 881
BseNI ACTGG 4 cut(s) 279, 649, 819, 961
BseRI GAGGAG 2 cut(s) 65, 965
BseXI GCAGC 3 cut(s) 445, 493, 689
BshFI GGCC 2 cut(s) 571, 818
BshNI GGYRCC 1 cut(s) 547
BsiHKAI GWGCWC 3 cut(s) 23, 435, 689
BsiSI CCGG 2 cut(s) 524, 635
BslI CCNNNNNNNGG 2 cut(s) 152, 567
BsmAI GTCTC 4 cut(s) 72, 317, 333, 642
BsmBI CGTCTC 2 cut(s) 317, 333
BsnI GGCC 2 cut(s) 571, 818
Bsp1286I GDGCHC 4 cut(s) 23, 435, 689, 761
Bsp1407I TGTACA 1 cut(s) 36
Bsp143I GATC 7 cut(s) 184, 191, 394, 739, 790, 827, 987
Bsp19I CCATGG 1 cut(s) 151
BspANI GGCC 2 cut(s) 571, 818
BspCNI CTCAG 7 cut(s) 82, 381, 511, 544, 719, 735, 882
BspLI GGNNCC 2 cut(s) 522, 549
BspMAI CTGCAG 1 cut(s) 483
BspOI GCTAGC 1 cut(s) 672
BspPI GGATC 4 cut(s) 199, 402, 747, 835
BspQI GCTCTTC 2 cut(s) 127, 423
BspT107I GGYRCC 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 427
BsrFI RCCGGY 1 cut(s) 634
BsrGI TGTACA 1 cut(s) 36
BsrI ACTGG 4 cut(s) 279, 649, 819, 961
BssAI RCCGGY 1 cut(s) 634
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 7 cut(s) 184, 191, 394, 739, 790, 827, 987
BssNI GRCGYC 1 cut(s) 326
BssT1I CCWWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 86
Bst6I CTCTTC 4 cut(s) 127, 423, 596, 862
BstACI GRCGYC 1 cut(s) 326
BstAUI TGTACA 1 cut(s) 36
BstC8I GCNNGC 2 cut(s) 78, 670
BstDEI CTNAG 7 cut(s) 69, 368, 498, 552, 706, 743, 890
BstDSI CCRYGG 1 cut(s) 151
BstF5I GGATG 4 cut(s) 20, 349, 718, 1023
BstKTI GATC 7 cut(s) 187, 194, 397, 742, 793, 830, 990
BstMAI GTCTC 4 cut(s) 72, 317, 333, 642
BstMBI GATC 7 cut(s) 184, 191, 394, 739, 790, 827, 987
BstMWI GCNNNNNNNGC 2 cut(s) 699, 765
BstSFI CTRYAG 1 cut(s) 479
BstV1I GCAGC 3 cut(s) 445, 493, 689
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 2 cut(s) 739, 790
BstYI RGATCY 2 cut(s) 739, 790
BsuRI GGCC 2 cut(s) 571, 818
BtgI CCRYGG 1 cut(s) 151
BtsCI GGATG 4 cut(s) 20, 349, 718, 1023
BtsIMutI CAGTG 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 78, 670
CaiI CAGNNNCTG 3 cut(s) 458, 742, 836
Cfr10I RCCGGY 1 cut(s) 634
Csp6I GTAC 4 cut(s) 37, 252, 696, 911
CviAII CATG 5 cut(s) 64, 152, 391, 503, 943
CviQI GTAC 4 cut(s) 37, 252, 696, 911
DdeI CTNAG 7 cut(s) 69, 368, 498, 552, 706, 743, 890
DpnI GATC 7 cut(s) 186, 193, 396, 741, 792, 829, 989
DpnII GATC 7 cut(s) 184, 191, 394, 739, 790, 827, 987
Eam1104I CTCTTC 4 cut(s) 127, 423, 596, 862
EarI CTCTTC 4 cut(s) 127, 423, 596, 862
Ecl136II GAGCTC 2 cut(s) 21, 687
Eco130I CCWWGG 1 cut(s) 151
Eco147I AGGCCT 1 cut(s) 571
Eco24I GRGCYC 3 cut(s) 23, 689, 761
Eco32I GATATC 1 cut(s) 934
Eco53kI GAGCTC 2 cut(s) 21, 687
Eco57I CTGAAG 1 cut(s) 968
EcoICRI GAGCTC 2 cut(s) 21, 687
EcoRI GAATTC 1 cut(s) 556
EcoRV GATATC 1 cut(s) 934
EcoT14I CCWWGG 1 cut(s) 151
EcoT38I GRGCYC 3 cut(s) 23, 689, 761
ErhI CCWWGG 1 cut(s) 151
Esp3I CGTCTC 2 cut(s) 317, 333
FaeI CATG 5 cut(s) 67, 155, 394, 506, 946
FalI AAGNNNNNCTT 2 cut(s) 623, 655
FatI CATG 5 cut(s) 63, 151, 390, 502, 942
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 3 cut(s) 459, 482, 703
FokI GGATG 4 cut(s) 27, 356, 725, 1030
FriOI GRGCYC 3 cut(s) 23, 689, 761
Fsp4HI GCNGC 3 cut(s) 459, 482, 703
FspBI CTAG 2 cut(s) 669, 699
GluI GCNGC 3 cut(s) 459, 482, 703
GsuI CTGGAG 1 cut(s) 666
HaeIII GGCC 2 cut(s) 571, 818
HapII CCGG 2 cut(s) 524, 635
Hin1I GRCGYC 1 cut(s) 326
Hin1II CATG 5 cut(s) 67, 155, 394, 506, 946
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 766
HinfI GANTC 4 cut(s) 284, 494, 719, 839
HpaII CCGG 2 cut(s) 524, 635
HphI GGTGA 3 cut(s) 281, 389, 392
Hpy166II GTNNAC 4 cut(s) 39, 358, 380, 1036
Hpy188III TCNNGA 2 cut(s) 330, 737
Hpy8I GTNNAC 4 cut(s) 39, 358, 380, 1036
HpyAV CCTTC 2 cut(s) 616, 771
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 6 cut(s) 137, 481, 576, 807, 857, 901
HpyF10VI GCNNNNNNNGC 2 cut(s) 699, 765
HpyF3I CTNAG 7 cut(s) 69, 368, 498, 552, 706, 743, 890
HpySE526I ACGT 1 cut(s) 326
Hsp92I GRCGYC 1 cut(s) 326
Hsp92II CATG 5 cut(s) 67, 155, 394, 506, 946
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 7 cut(s) 184, 191, 394, 739, 790, 827, 987
LguI GCTCTTC 2 cut(s) 127, 423
LmnI GCTCC 3 cut(s) 18, 455, 1030
Lsp1109I GCAGC 3 cut(s) 445, 493, 689
LweI GCATC 2 cut(s) 334, 655
MaeI CTAG 2 cut(s) 669, 699
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 2 cut(s) 91, 281
MalI GATC 7 cut(s) 186, 193, 396, 741, 792, 829, 989
MboI GATC 7 cut(s) 184, 191, 394, 739, 790, 827, 987
MflI RGATCY 2 cut(s) 739, 790
MhlI GDGCHC 4 cut(s) 23, 435, 689, 761
MlyI GAGTC 2 cut(s) 278, 713
MroXI GAANNNNTTC 1 cut(s) 474
MseI TTAA 2 cut(s) 486, 641
MspI CCGG 2 cut(s) 524, 635
MwoI GCNNNNNNNGC 2 cut(s) 699, 765
NcoI CCATGG 1 cut(s) 151
NdeII GATC 7 cut(s) 184, 191, 394, 739, 790, 827, 987
NheI GCTAGC 1 cut(s) 668
NlaIII CATG 5 cut(s) 67, 155, 394, 506, 946
NlaIV GGNNCC 2 cut(s) 522, 549
NmuCI GTSAC 2 cut(s) 91, 281
PceI AGGCCT 1 cut(s) 571
PciSI GCTCTTC 2 cut(s) 127, 423
PdmI GAANNNNTTC 1 cut(s) 474
PfeI GAWTC 2 cut(s) 494, 839
PflMI CCANNNNNTGG 1 cut(s) 152
PkrI GCNGC 3 cut(s) 460, 483, 704
PleI GAGTC 2 cut(s) 278, 713
PpsI GAGTC 2 cut(s) 278, 713
Psp124BI GAGCTC 2 cut(s) 23, 689
PspN4I GGNNCC 2 cut(s) 522, 549
PsrI GAACNNNNNNTAC 2 cut(s) 956, 988
PstI CTGCAG 1 cut(s) 483
PstNI CAGNNNCTG 3 cut(s) 458, 742, 836
PsuI RGATCY 2 cut(s) 739, 790
RsaI GTAC 4 cut(s) 38, 253, 697, 912
RsaNI GTAC 4 cut(s) 37, 252, 696, 911
SacI GAGCTC 2 cut(s) 23, 689
SapI GCTCTTC 2 cut(s) 127, 423
SaqAI TTAA 2 cut(s) 486, 641
SatI GCNGC 3 cut(s) 459, 482, 703
Sau3AI GATC 7 cut(s) 184, 191, 394, 739, 790, 827, 987
ScaI AGTACT 1 cut(s) 697
SchI GAGTC 2 cut(s) 278, 713
SduI GDGCHC 4 cut(s) 23, 435, 689, 761
SfaNI GCATC 2 cut(s) 334, 655
SfcI CTRYAG 1 cut(s) 479
SmlI CTYRAG 3 cut(s) 688, 947, 997
SmoI CTYRAG 3 cut(s) 688, 947, 997
SseBI AGGCCT 1 cut(s) 571
SspMI CTAG 2 cut(s) 669, 699
SstI GAGCTC 2 cut(s) 23, 689
StuI AGGCCT 1 cut(s) 571
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 86
TaiI ACGT 1 cut(s) 329
TaqI TCGA 2 cut(s) 331, 617
TatI WGTACW 2 cut(s) 36, 695
TfiI GAWTC 2 cut(s) 494, 839
Tru1I TTAA 2 cut(s) 486, 641
Tru9I TTAA 2 cut(s) 486, 641
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 2 cut(s) 91, 281
TseI GCWGC 3 cut(s) 458, 481, 702
Tsp45I GTSAC 2 cut(s) 91, 281
TspDTI ATGAA 2 cut(s) 52, 119
TspRI CASTG 1 cut(s) 286
Van91I CCANNNNNTGG 1 cut(s) 152
XapI RAATTY 2 cut(s) 556, 894
XmnI GAANNNNTTC 1 cut(s) 474
XspI CTAG 2 cut(s) 669, 699
ZraI GACGTC 1 cut(s) 327
ZrmI AGTACT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.