AT2G15090

3-ketoacyl-coa synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012744
Physical Location & Seq
Forward (+)
6542166 .. 6544118
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G15090.1

Sequence Viewer

Length: 1446 bp
ATGAAGAACTTAAAGATGGTTTTCTTCAAGATCCTCTTTATCTCTTTAATGGCAGGATTAGCCATGAAAGGATCTAAGATCAACGTAGAAGATCTCCAAAAGTTCTCCCTCCACCATACACAGAACAACCTCCAAACCATAAGCCTTCTATTGTTTCTTGTCGTTTTTGTGTGGATCCTCTACATGTTAACCCGACCTAAACCCGTTTACCTTGTTGATTTCTCCTGCTACCTTCCACCGTCGCATCTCAAGGTCAGTATCCAAACCCTAATGGGACACGCAAGACGTGCAAGAGAAGCAGGCATGTGTTGGAAGAACAAAGAGAGCGACCATTTAGTTGACTTCCAGGAGAAGATTCTTGAACGTTCCGGTCTTGGTCAAGAAACCTACATCCCCGAGGGTCTTCAGTGCTTCCCACTTCAGCAAGGCATGGGTGCTTCACGTAAAGAGACGGAAGAAGTAATCTTCGGAGCTCTTGACAATCTTTTTCGCAACACCGGTGTAAAACCTGATGATATCGGTATATTGGTGGTGAATTCTAGCACGTTTAATCCAACTCCATCACTCGCCTCCATGATTGTGAACAAGTACAAACTCAGAGACAACATCAAGAGTTTGAATCTTGGAGGGATGGGTTGCAGTGCCGGAGTTATAGCTGTTGATGTCGCTAAGGGATTACTACAAGTTCATAGGAACACTTATGCTATTGTAGTAAGCACAGAGAACATCACTCAGAACTTATACTTGGGGAAAAACAAATCAATGCTAGTCACAAACTGTTTGTTCCGCGTTGGTGGTGCTGCGGTTCTGCTTTCAAACAGATCTAGAGACCGTAACCGCGCCAAATACGAGCTTGTTCACACCGTACGGATCCATACCGGATCAGATGATAGGTCGTTCGAATGTGCGACACAAGAAGAGGATGAAGATGGTATAATTGGAGTTACCTTGACAAAGAATCTACCTATGGTGGCTGCAAGGACTCTTAAGATAAATATCGCAACTTTGGGTCCTCTTGTACTTCCATTAAAAGAGAAGCTAGCCTTCTTTATTACTTTTGTCAAGAAGAAGTATTTCAAGCCAGAGTTAAGGAATTATACACCAGATTTCAAGCTTGCCTTTGAGCATTTCTGTATCCACGCTGGTGGAAGAGCTCTAATAGATGAGCTGGAGAAGAACCTTAAGCTTTCTCCGTTACACGTAGAGGCGTCAAGAATGACACTACACAGGTTTGGTAACACTTCTTCTAGCTCAATCTGGTACGAGTTAGCTTATACAGAAGCTAAAGGAAGGATGAAGGAAGGAGATAGGATTTGGCAGATTGCTTTGGGGTCAGGTTTTAAGTGTAACAGTTCAGTATGGGTGGCTCTGCGAGACGTTAAGCCTTCAGCTAACAGTCCATGGGAAGACTGTATGGATAGATATCCGGTTGAGATTGATATTTAA

Protein Analysis

481

Amino Acids

54.19

Weight (kDa)

9.14

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 61 - 357 5.2e-131 FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C PF08541 375 - 454 2.3e-10 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C PF02797 377 - 435 6.1e-09 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012744)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15090 AT2G46720 AT3G10280 AT4G34250 AT4G34520
fragaria_vesca FvH4_7g28500
malus_domestica MD01G1188700.v1.1
prunus_persica Prupe.2G285400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0375881
rosa_laevigata RLG00000026647
rosa_multiflora Rmu_sc0001943.1_g000009
rosa_roxburghii Rroxscaffold_4G00282560
rosa_rugosa Rorug01G0392100
rosa_samantha Rh1AG404000 Rh1BG367400 Rh1CG380200 Rh1DG397400
rosa_wichuraiana Rw0G000970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 789, 840
AciI CCGC 3 cut(s) 787, 803, 838
AclI AACGTT 1 cut(s) 364
AclWI GGATC 7 cut(s) 25, 79, 169, 182, 865, 878, 889
AcsI RAATTY 1 cut(s) 535
AcuI CTGAAG 3 cut(s) 389, 404, 1371
AcyI GRCGYC 1 cut(s) 1208
AfaI GTAC 4 cut(s) 590, 867, 1020, 1262
AflII CTTAAG 2 cut(s) 986, 1181
AflIII ACRYGT 2 cut(s) 183, 1198
AgeI ACCGGT 1 cut(s) 497
AgsI TTSAA 6 cut(s) 28, 362, 619, 816, 1078, 1111
AjiI CACGTC 1 cut(s) 287
AjnI CCWGG 1 cut(s) 345
AjuI GAANNNNNNNTTGG 2 cut(s) 728, 760
AleI CACNNNNGTG 1 cut(s) 1143
Alw21I GWGCWC 2 cut(s) 475, 1156
Alw26I GTCTC 4 cut(s) 443, 594, 822, 1368
AlwI GGATC 7 cut(s) 25, 79, 169, 182, 865, 878, 889
Ama87I CYCGRG 1 cut(s) 395
ApeKI GCWGC 2 cut(s) 800, 974
ApoI RAATTY 1 cut(s) 535
AsiGI ACCGGT 1 cut(s) 497
Asp700I GAANNNNTTC 1 cut(s) 1073
AspLEI GCGC 1 cut(s) 842
AspS9I GGNCC 1 cut(s) 1010
AsuHPI GGTGA 1 cut(s) 544
AsuII TTCGAA 1 cut(s) 900
AsuNHI GCTAGC 1 cut(s) 1039
AvaI CYCGRG 1 cut(s) 395
AvaII GGWCC 1 cut(s) 1010
BamHI GGATCC 2 cut(s) 174, 870
BanII GRGCYC 2 cut(s) 475, 1156
BarI GAAGNNNNNNTAC 2 cut(s) 1228, 1260
BbsI GAAGAC 2 cut(s) 395, 1413
Bbv12I GWGCWC 2 cut(s) 475, 1156
BbvI GCAGC 2 cut(s) 787, 961
BccI CCATC 4 cut(s) 10, 568, 625, 923
BciT130I CCWGG 1 cut(s) 347
BciVI GTATCC 2 cut(s) 269, 1145
BcoDI GTCTC 4 cut(s) 443, 594, 822, 1368
BfaI CTAG 5 cut(s) 540, 767, 825, 1040, 1248
BfrI CTTAAG 2 cut(s) 986, 1181
BfuI GTATCC 2 cut(s) 269, 1145
BglII AGATCT 2 cut(s) 91, 821
BisI GCNGC 2 cut(s) 801, 975
BlsI GCNGC 2 cut(s) 802, 976
Bme1390I CCNGG 1 cut(s) 347
Bme18I GGWCC 1 cut(s) 1010
BmeT110I CYCGRG 1 cut(s) 395
BmgBI CACGTC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 1010
BmiI GGNNCC 3 cut(s) 176, 872, 1011
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 1 cut(s) 253
BmtI GCTAGC 1 cut(s) 1043
BpiI GAAGAC 2 cut(s) 395, 1413
BpmI CTGGAG 1 cut(s) 1190
Bpu10I CCTNAGC 1 cut(s) 669
Bpu14I TTCGAA 1 cut(s) 900
BpuEI CTTGAG 1 cut(s) 233
BsaAI YACGTR 2 cut(s) 443, 1201
BsaBI GATNNNNATC 2 cut(s) 995, 1422
BsaHI GRCGYC 1 cut(s) 1208
BsaI GGTCTC 1 cut(s) 822
BsaJI CCNNGG 2 cut(s) 396, 1400
BsaWI WCCGGW 4 cut(s) 368, 497, 878, 1426
Bse118I RCCGGY 1 cut(s) 497
Bse8I GATNNNNATC 2 cut(s) 995, 1422
BseBI CCWGG 1 cut(s) 347
BseDI CCNNGG 2 cut(s) 396, 1400
BseGI GGATG 4 cut(s) 390, 636, 928, 1299
BseJI GATNNNNATC 2 cut(s) 995, 1422
BseMII CTCAG 2 cut(s) 610, 746
BseXI GCAGC 2 cut(s) 787, 961
Bsh1236I CGCG 2 cut(s) 789, 840
BshTI ACCGGT 1 cut(s) 497
BsiHKAI GWGCWC 2 cut(s) 475, 1156
BsiHKCI CYCGRG 1 cut(s) 395
BsiSI CCGG 5 cut(s) 369, 498, 645, 879, 1427
BsiWI CGTACG 1 cut(s) 865
BslFI GGGAC 1 cut(s) 288
BsmAI GTCTC 4 cut(s) 443, 594, 822, 1368
BsmBI CGTCTC 2 cut(s) 443, 1368
BsmFI GGGAC 1 cut(s) 288
Bso31I GGTCTC 1 cut(s) 822
BsoBI CYCGRG 1 cut(s) 395
Bsp119I TTCGAA 1 cut(s) 900
Bsp1286I GDGCHC 2 cut(s) 475, 1156
Bsp143I GATC 8 cut(s) 30, 71, 78, 91, 174, 821, 870, 881
Bsp19I CCATGG 1 cut(s) 1400
BspACI CCGC 3 cut(s) 787, 803, 838
BspCNI CTCAG 2 cut(s) 609, 745
BspFNI CGCG 2 cut(s) 789, 840
BspLI GGNNCC 3 cut(s) 176, 872, 1011
BspOI GCTAGC 1 cut(s) 1043
BspPI GGATC 7 cut(s) 25, 79, 169, 182, 865, 878, 889
BspQI GCTCTTC 1 cut(s) 1144
BspT104I TTCGAA 1 cut(s) 900
BspTI CTTAAG 2 cut(s) 986, 1181
BspTNI GGTCTC 1 cut(s) 822
BsrFI RCCGGY 1 cut(s) 497
BssAI RCCGGY 1 cut(s) 497
BssECI CCNNGG 2 cut(s) 396, 1400
BssMI GATC 8 cut(s) 30, 71, 78, 91, 174, 821, 870, 881
BssNI GRCGYC 1 cut(s) 1208
BssT1I CCWWGG 1 cut(s) 1400
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 7 cut(s) 240, 779, 833, 865, 1352, 1397, 1412
Bst6I CTCTTC 2 cut(s) 912, 1144
BstACI GRCGYC 1 cut(s) 1208
BstAFI CTTAAG 2 cut(s) 986, 1181
BstAPI GCANNNNNTGC 1 cut(s) 287
BstBAI YACGTR 2 cut(s) 443, 1201
BstBI TTCGAA 1 cut(s) 900
BstC8I GCNNGC 3 cut(s) 301, 1041, 1116
BstDEI CTNAG 4 cut(s) 75, 596, 669, 732
BstDSI CCRYGG 1 cut(s) 1400
BstF5I GGATG 4 cut(s) 390, 636, 928, 1299
BstFNI CGCG 2 cut(s) 789, 840
BstHHI GCGC 1 cut(s) 842
BstKTI GATC 8 cut(s) 33, 74, 81, 94, 177, 824, 873, 884
BstMAI GTCTC 4 cut(s) 443, 594, 822, 1368
BstMBI GATC 8 cut(s) 30, 71, 78, 91, 174, 821, 870, 881
BstMWI GCNNNNNNNGC 3 cut(s) 59, 287, 296
BstNI CCWGG 1 cut(s) 347
BstNSI RCATGY 2 cut(s) 187, 307
BstSCI CCNGG 1 cut(s) 345
BstUI CGCG 2 cut(s) 789, 840
BstV1I GCAGC 2 cut(s) 787, 961
BstV2I GAAGAC 2 cut(s) 395, 1413
BstX2I RGATCY 6 cut(s) 30, 71, 91, 174, 821, 870
BstXI CCANNNNNNTGG 1 cut(s) 1145
BstYI RGATCY 6 cut(s) 30, 71, 91, 174, 821, 870
BsuI GTATCC 2 cut(s) 269, 1145
BtgI CCRYGG 1 cut(s) 1400
BtrI CACGTC 1 cut(s) 287
BtsCI GGATG 4 cut(s) 390, 636, 928, 1299
BtsI GCAGTG 1 cut(s) 646
BtsIMutI CAGTG 2 cut(s) 413, 646
Cac8I GCNNGC 3 cut(s) 301, 1041, 1116
CfoI GCGC 1 cut(s) 842
Cfr10I RCCGGY 1 cut(s) 497
Cfr13I GGNCC 1 cut(s) 1010
CseI GACGC 1 cut(s) 1197
Csp6I GTAC 4 cut(s) 589, 866, 1019, 1261
CspAI ACCGGT 1 cut(s) 497
CviAII CATG 6 cut(s) 64, 184, 304, 430, 574, 1401
CviQI GTAC 4 cut(s) 589, 866, 1019, 1261
DdeI CTNAG 4 cut(s) 75, 596, 669, 732
DpnI GATC 8 cut(s) 32, 73, 80, 93, 176, 823, 872, 883
DpnII GATC 8 cut(s) 30, 71, 78, 91, 174, 821, 870, 881
Eam1104I CTCTTC 2 cut(s) 912, 1144
EarI CTCTTC 2 cut(s) 912, 1144
Ecl136II GAGCTC 2 cut(s) 473, 1154
Eco130I CCWWGG 1 cut(s) 1400
Eco24I GRGCYC 2 cut(s) 475, 1156
Eco31I GGTCTC 1 cut(s) 822
Eco32I GATATC 2 cut(s) 517, 1424
Eco47I GGWCC 1 cut(s) 1010
Eco53kI GAGCTC 2 cut(s) 473, 1154
Eco57I CTGAAG 3 cut(s) 389, 404, 1371
Eco88I CYCGRG 1 cut(s) 395
EcoICRI GAGCTC 2 cut(s) 473, 1154
EcoO109I RGGNCCY 1 cut(s) 1010
EcoRI GAATTC 1 cut(s) 535
EcoRII CCWGG 1 cut(s) 345
EcoRV GATATC 2 cut(s) 517, 1424
EcoT14I CCWWGG 1 cut(s) 1400
EcoT38I GRGCYC 2 cut(s) 475, 1156
ErhI CCWWGG 1 cut(s) 1400
Esp3I CGTCTC 2 cut(s) 443, 1368
FaeI CATG 6 cut(s) 67, 187, 307, 433, 577, 1404
FalI AAGNNNNNCTT 6 cut(s) 20, 52, 1028, 1060, 1103, 1135
FaqI GGGAC 1 cut(s) 288
FatI CATG 6 cut(s) 63, 183, 303, 429, 573, 1400
Fnu4HI GCNGC 2 cut(s) 801, 975
FokI GGATG 4 cut(s) 377, 643, 935, 1306
FriOI GRGCYC 2 cut(s) 475, 1156
Fsp4HI GCNGC 2 cut(s) 801, 975
FspBI CTAG 5 cut(s) 540, 767, 825, 1040, 1248
GlaI GCGC 1 cut(s) 841
GluI GCNGC 2 cut(s) 801, 975
GsuI CTGGAG 1 cut(s) 1190
HapII CCGG 5 cut(s) 369, 498, 645, 879, 1427
HgaI GACGC 1 cut(s) 1197
HhaI GCGC 1 cut(s) 842
Hin1I GRCGYC 1 cut(s) 1208
Hin1II CATG 6 cut(s) 67, 187, 307, 433, 577, 1404
Hin6I GCGC 1 cut(s) 840
HinP1I GCGC 1 cut(s) 840
HincII GTYRAC 2 cut(s) 189, 340
HindII GTYRAC 2 cut(s) 189, 340
HindIII AAGCTT 2 cut(s) 1112, 1184
HinfI GANTC 4 cut(s) 355, 619, 958, 982
HpaI GTTAAC 1 cut(s) 189
HpaII CCGG 5 cut(s) 369, 498, 645, 879, 1427
HphI GGTGA 1 cut(s) 544
Hpy166II GTNNAC 5 cut(s) 189, 208, 340, 583, 859
Hpy188I TCNGA 4 cut(s) 470, 599, 735, 886
Hpy188III TCNNGA 8 cut(s) 28, 359, 380, 476, 610, 825, 1063, 1212
Hpy8I GTNNAC 5 cut(s) 189, 208, 340, 583, 859
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 7 cut(s) 155, 242, 1054, 1284, 1291, 1295, 1395
HpyCH4III ACNGT 7 cut(s) 240, 779, 833, 865, 1352, 1397, 1412
HpyCH4IV ACGT 7 cut(s) 84, 286, 364, 442, 545, 1200, 1377
HpyCH4V TGCA 3 cut(s) 290, 639, 977
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 287, 296
HpyF3I CTNAG 4 cut(s) 75, 596, 669, 732
HpySE526I ACGT 7 cut(s) 84, 286, 364, 442, 545, 1200, 1377
Hsp92I GRCGYC 1 cut(s) 1208
Hsp92II CATG 6 cut(s) 67, 187, 307, 433, 577, 1404
HspAI GCGC 1 cut(s) 840
KspAI GTTAAC 1 cut(s) 189
Kzo9I GATC 8 cut(s) 30, 71, 78, 91, 174, 821, 870, 881
LguI GCTCTTC 1 cut(s) 1144
LmnI GCTCC 1 cut(s) 470
Lsp1109I GCAGC 2 cut(s) 787, 961
LweI GCATC 1 cut(s) 253
MaeI CTAG 5 cut(s) 540, 767, 825, 1040, 1248
MaeII ACGT 7 cut(s) 84, 286, 364, 442, 545, 1200, 1377
MaeIII GTNAC 6 cut(s) 769, 833, 943, 1194, 1235, 1346
MalI GATC 8 cut(s) 32, 73, 80, 93, 176, 823, 872, 883
MboI GATC 8 cut(s) 30, 71, 78, 91, 174, 821, 870, 881
MflI RGATCY 6 cut(s) 30, 71, 91, 174, 821, 870
MhlI GDGCHC 2 cut(s) 475, 1156
MluCI AATT 3 cut(s) 535, 936, 1093
MlyI GAGTC 1 cut(s) 976
MmeI TCCRAC 2 cut(s) 290, 578
MroXI GAANNNNTTC 1 cut(s) 1073
MslI CAYNNNNRTG 2 cut(s) 578, 1143
MspCI CTTAAG 2 cut(s) 986, 1181
MspI CCGG 5 cut(s) 369, 498, 645, 879, 1427
MspR9I CCNGG 1 cut(s) 347
MvaI CCWGG 1 cut(s) 347
MvnI CGCG 2 cut(s) 789, 840
MwoI GCNNNNNNNGC 3 cut(s) 59, 287, 296
NcoI CCATGG 1 cut(s) 1400
NdeII GATC 8 cut(s) 30, 71, 78, 91, 174, 821, 870, 881
NheI GCTAGC 1 cut(s) 1039
NlaIII CATG 6 cut(s) 67, 187, 307, 433, 577, 1404
NlaIV GGNNCC 3 cut(s) 176, 872, 1011
NmuCI GTSAC 1 cut(s) 769
NspI RCATGY 2 cut(s) 187, 307
NspV TTCGAA 1 cut(s) 900
OliI CACNNNNGTG 1 cut(s) 1143
PciI ACATGT 1 cut(s) 183
PciSI GCTCTTC 1 cut(s) 1144
PdmI GAANNNNTTC 1 cut(s) 1073
PfeI GAWTC 3 cut(s) 355, 619, 958
Pfl23II CGTACG 1 cut(s) 865
PfoI TCCNGGA 1 cut(s) 345
PinAI ACCGGT 1 cut(s) 497
PkrI GCNGC 2 cut(s) 802, 976
PleI GAGTC 1 cut(s) 976
PpsI GAGTC 1 cut(s) 976
Ppu21I YACGTR 2 cut(s) 443, 1201
PpuMI RGGWCCY 1 cut(s) 1010
PscI ACATGT 1 cut(s) 183
Psp124BI GAGCTC 2 cut(s) 475, 1156
Psp1406I AACGTT 1 cut(s) 364
Psp5II RGGWCCY 1 cut(s) 1010
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspLI CGTACG 1 cut(s) 865
PspN4I GGNNCC 3 cut(s) 176, 872, 1011
PspPI GGNCC 1 cut(s) 1010
PspPPI RGGWCCY 1 cut(s) 1010
PsuI RGATCY 6 cut(s) 30, 71, 91, 174, 821, 870
RsaI GTAC 4 cut(s) 590, 867, 1020, 1262
RsaNI GTAC 4 cut(s) 589, 866, 1019, 1261
RseI CAYNNNNRTG 2 cut(s) 578, 1143
SacI GAGCTC 2 cut(s) 475, 1156
SapI GCTCTTC 1 cut(s) 1144
SatI GCNGC 2 cut(s) 801, 975
Sau3AI GATC 8 cut(s) 30, 71, 78, 91, 174, 821, 870, 881
Sau96I GGNCC 1 cut(s) 1010
SchI GAGTC 1 cut(s) 976
ScrFI CCNGG 1 cut(s) 347
SduI GDGCHC 2 cut(s) 475, 1156
SfaNI GCATC 1 cut(s) 253
SfuI TTCGAA 1 cut(s) 900
SgrAI CRCCGGYG 1 cut(s) 497
SinI GGWCC 1 cut(s) 1010
SmiMI CAYNNNNRTG 2 cut(s) 578, 1143
SmlI CTYRAG 3 cut(s) 248, 986, 1181
SmoI CTYRAG 3 cut(s) 248, 986, 1181
Sse9I AATT 3 cut(s) 535, 936, 1093
SsiI CCGC 3 cut(s) 787, 803, 838
SspMI CTAG 5 cut(s) 540, 767, 825, 1040, 1248
SstI GAGCTC 2 cut(s) 475, 1156
StyD4I CCNGG 1 cut(s) 345
StyI CCWWGG 1 cut(s) 1400
TaaI ACNGT 7 cut(s) 240, 779, 833, 865, 1352, 1397, 1412
TaiI ACGT 7 cut(s) 87, 289, 367, 445, 548, 1203, 1380
TaqI TCGA 1 cut(s) 900
TasI AATT 3 cut(s) 535, 936, 1093
TatI WGTACW 2 cut(s) 588, 1018
TfiI GAWTC 3 cut(s) 355, 619, 958
TscAI CASTG 2 cut(s) 413, 646
TseFI GTSAC 1 cut(s) 769
TseI GCWGC 2 cut(s) 800, 974
Tsp45I GTSAC 1 cut(s) 769
TspDTI ATGAA 5 cut(s) 17, 80, 677, 939, 1310
TspGWI ACGGA 3 cut(s) 467, 883, 1182
TspRI CASTG 2 cut(s) 413, 646
Vha464I CTTAAG 2 cut(s) 986, 1181
VpaK11BI GGWCC 1 cut(s) 1010
XapI RAATTY 1 cut(s) 535
XbaI TCTAGA 1 cut(s) 824
XceI RCATGY 2 cut(s) 187, 307
XmnI GAANNNNTTC 1 cut(s) 1073
XspI CTAG 5 cut(s) 540, 767, 825, 1040, 1248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.