AT4G34520

3-ketoacyl-coa synthase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
16494205 .. 16495842
1638 bp
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UTR
Exon/CDS
Intron
AT4G34520.1

Sequence Viewer

Length: 1521 bp
ATGACGTCCGTTAACGTTAAGCTCCTTTACCGTTACGTCTTAACCAACTTTTTCAACCTCTGTTTGTTCCCGTTAACGGCGTTCCTCGCCGGAAAAGCCTCTCGGCTTACCATAAACGATCTCCACAACTTCCTTTCCTATCTCCAACACAACCTTATAACAGTAACTTTACTCTTTGCTTTCACTGTTTTCGGTTTGGTTCTCTACATCGTAACCCGACCCAATCCGGTTTATCTCGTTGACTACTCGTGTTACCTTCCACCACCGCATCTCAAAGTTAGTGTCTCTAAAGTCATGGATATTTTCTACCAAATAAGAAAAGCTGATACTTCTTCACGGAACGTGGCATGTGATGATCCGTCCTCGCTCGATTTCCTGAGGAAGATTCAAGAGCGTTCAGGTCTAGGTGATGAGACGTACAGTCCTGAGGGACTCATTCACGTACCACCGCGGAAGACTTTTGCAGCGTCACGTGAAGAGACAGAGAAGGTTATCATCGGTGCGCTCGAAAATCTATTCGAGAACACCAAAGTTAACCCTAGAGAGATTGGTATACTTGTGGTGAACTCAAGCATGTTTAATCCAACTCCTTCGCTATCCGCTATGGTCGTTAATACTTTCAAGCTCCGAAGCAACATCAAAAGCTTTAATCTAGGAGGAATGGGTTGTAGTGCTGGTGTTATTGCCATTGATTTGGCTAAAGACTTGTTGCATGTTCATAAAAACACTTATGCTCTTGTGGTGAGCACTGAGAACATCACACAAGGCATTTATGCTGGAGAAAATAGATCAATGATGGTTAGCAATTGCTTGTTTCGTGTTGGTGGGGCCGCGATTTTGCTCTCTAACAAGTCGGGAGACCGGAGACGGTCCAAGTACAAGCTAGTTCACACGGTCCGAACGCATACTGGAGCTGATGACAAGTCTTTTCGATGTGTGCAACAAGAAGACGATGAGAGCGGCAAAATCGGAGTTTGTCTGTCAAAGGACATAACCAATGTTGCGGGGACAACACTTACGAAAAATATAGCAACATTGGGTCCGTTGATTCTTCCTTTAAGCGAAAAGTTTCTTTTTTTCGCTACCTTCGTCGCCAAGAAACTTCTAAAGGATAAAATCAAGCATTACTATGTTCCGGATTTCAAGCTTGCTGTTGACCATTTCTGTATTCATGCCGGAGGCAGAGCCGTGATCGATGAGCTAGAGAAGAACTTAGGACTATCGCCGATCGATGTGGAGGCATCTAGATCAACGTTACATAGATTTGGGAATACTTCATCTAGCTCAATTTGGTATGAATTAGCATACATAGAGGCAAAGGGAAGAATGAAGAAAGGGAATAAAGCTTGGCAGATTGCTTTAGGATCAGGGTTTAAGTGTAATAGTGCGGTTTGGGTGGCTCTACGCAATGTCAAGGCATCGGCAAATAGTCCTTGGCAACATTGCATCGATAGATATCCGGTTAAAATTGATTCTGATTTGTCAAAGTCAAAGACTCATGTCCAAAACGGTCGGTCCTAA

Protein Analysis

506

Amino Acids

56.26

Weight (kDa)

9.4

Isoelectric Point (pI)

36.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 69 - 368 8.6e-133 FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C PF08541 385 - 465 6.9e-11 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C PF02797 388 - 455 1.1e-09 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012744)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 158
AatII GACGTC 1 cut(s) 8
AccBSI CCGCTC 1 cut(s) 960
AccI GTMKAC 1 cut(s) 553
AccII CGCG 2 cut(s) 451, 833
AccIII TCCGGA 1 cut(s) 1135
AciI CCGC 8 cut(s) 266, 449, 451, 600, 831, 960, 1004, 1388
AclI AACGTT 2 cut(s) 15, 1253
AclWI GGATC 2 cut(s) 350, 1372
AcvI CACGTG 1 cut(s) 473
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 419, 444, 878
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 4 cut(s) 55, 389, 622, 1144
AhdI GACNNNNNGTC 1 cut(s) 420
Alw21I GWGCWC 1 cut(s) 749
Alw26I GTCTC 5 cut(s) 289, 407, 473, 852, 859
AlwI GGATC 2 cut(s) 350, 1372
Aor13HI TCCGGA 1 cut(s) 1135
AoxI GGCC 1 cut(s) 828
ApeKI GCWGC 1 cut(s) 464
ArsI GACNNNNNNTTYG 2 cut(s) 267, 299
Asp700I GAANNNNTTC 1 cut(s) 1068
AspLEI GCGC 1 cut(s) 505
AspS9I GGNCC 5 cut(s) 828, 870, 895, 1040, 1515
AsuHPI GGTGA 3 cut(s) 419, 574, 754
AvaII GGWCC 4 cut(s) 870, 895, 1040, 1515
AxyI CCTNAGG 2 cut(s) 377, 426
BauI CACGAG 1 cut(s) 247
BbrPI CACGTG 1 cut(s) 473
BbsI GAAGAC 2 cut(s) 461, 954
Bbv12I GWGCWC 1 cut(s) 749
BbvI GCAGC 1 cut(s) 476
BccI CCATC 1 cut(s) 790
BceAI ACGGC 2 cut(s) 93, 1172
BcoDI GTCTC 5 cut(s) 289, 407, 473, 852, 859
BfaI CTAG 7 cut(s) 404, 540, 653, 884, 1202, 1245, 1281
BisI GCNGC 3 cut(s) 465, 831, 961
BlsI GCNGC 3 cut(s) 466, 832, 962
Bme18I GGWCC 4 cut(s) 870, 895, 1040, 1515
BmeRI GACNNNNNGTC 1 cut(s) 420
BmgT120I GGNCC 5 cut(s) 828, 870, 895, 1040, 1515
BmiI GGNNCC 2 cut(s) 829, 1041
BmsI GCATC 4 cut(s) 277, 1250, 1427, 1455
BoxI GACNNNNGTC 1 cut(s) 1499
BpiI GAAGAC 2 cut(s) 461, 954
BpmI CTGGAG 2 cut(s) 798, 930
BpuEI CTTGAG 1 cut(s) 553
Bsa29I ATCGAT 3 cut(s) 1194, 1230, 1449
BsaAI YACGTR 2 cut(s) 442, 473
BsaBI GATNNNNATC 1 cut(s) 1455
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 852
BsaJI CCNNGG 2 cut(s) 449, 1433
BsaWI WCCGGW 4 cut(s) 226, 861, 1135, 1459
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 913
Bse21I CCTNAGG 2 cut(s) 377, 426
Bse3DI GCAATG 2 cut(s) 1414, 1441
Bse8I GATNNNNATC 1 cut(s) 1455
BseAI TCCGGA 1 cut(s) 1135
BseCI ATCGAT 3 cut(s) 1194, 1230, 1449
BseDI CCNNGG 2 cut(s) 449, 1433
BseJI GATNNNNATC 1 cut(s) 1455
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 2 cut(s) 1414, 1441
BseMII CTCAG 3 cut(s) 368, 417, 741
BseNI ACTGG 1 cut(s) 913
BseXI GCAGC 1 cut(s) 476
Bsh1236I CGCG 2 cut(s) 451, 833
Bsh1285I CGRYCG 2 cut(s) 1230, 1513
BshFI GGCC 1 cut(s) 830
BshVI ATCGAT 3 cut(s) 1194, 1230, 1449
BsiEI CGRYCG 2 cut(s) 1230, 1513
BsiHKAI GWGCWC 1 cut(s) 749
BsiSI CCGG 6 cut(s) 90, 227, 862, 1136, 1176, 1460
BslFI GGGAC 2 cut(s) 444, 1021
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 5 cut(s) 289, 407, 473, 852, 859
BsmBI CGTCTC 2 cut(s) 407, 859
BsmFI GGGAC 2 cut(s) 444, 1021
BsnI GGCC 1 cut(s) 830
Bso31I GGTCTC 1 cut(s) 852
Bsp1286I GDGCHC 1 cut(s) 749
Bsp13I TCCGGA 1 cut(s) 1135
Bsp143I GATC 7 cut(s) 118, 355, 788, 1191, 1227, 1247, 1364
BspACI CCGC 8 cut(s) 266, 449, 451, 600, 831, 960, 1004, 1388
BspANI GGCC 1 cut(s) 830
BspCNI CTCAG 3 cut(s) 369, 418, 742
BspDI ATCGAT 3 cut(s) 1194, 1230, 1449
BspEI TCCGGA 1 cut(s) 1135
BspFNI CGCG 2 cut(s) 451, 833
BspLI GGNNCC 2 cut(s) 829, 1041
BspPI GGATC 2 cut(s) 350, 1372
BspTNI GGTCTC 1 cut(s) 852
BsrBI CCGCTC 1 cut(s) 960
BsrDI GCAATG 2 cut(s) 1414, 1441
BsrI ACTGG 1 cut(s) 913
BssECI CCNNGG 2 cut(s) 449, 1433
BssMI GATC 7 cut(s) 118, 355, 788, 1191, 1227, 1247, 1364
BssNAI GTATAC 1 cut(s) 554
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 247
BssT1I CCWWGG 1 cut(s) 1433
Bst1107I GTATAC 1 cut(s) 554
Bst2BI CACGAG 1 cut(s) 247
Bst4CI ACNGT 7 cut(s) 32, 163, 187, 422, 870, 895, 1511
Bst6I CTCTTC 1 cut(s) 471
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 2 cut(s) 442, 473
BstC8I GCNNGC 1 cut(s) 1149
BstDEI CTNAG 4 cut(s) 377, 426, 750, 1213
BstDSI CCRYGG 1 cut(s) 449
BstFNI CGCG 2 cut(s) 451, 833
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 7 cut(s) 121, 358, 791, 1194, 1230, 1250, 1367
BstMAI GTCTC 5 cut(s) 289, 407, 473, 852, 859
BstMBI GATC 7 cut(s) 118, 355, 788, 1191, 1227, 1247, 1364
BstMCI CGRYCG 2 cut(s) 1230, 1513
BstMWI GCNNNNNNNGC 2 cut(s) 86, 95
BstNSI RCATGY 3 cut(s) 351, 577, 716
BstPAI GACNNNNGTC 1 cut(s) 1499
BstUI CGCG 2 cut(s) 451, 833
BstV1I GCAGC 1 cut(s) 476
BstV2I GAAGAC 2 cut(s) 461, 954
BstXI CCANNNNNNTGG 1 cut(s) 694
BstZ17I GTATAC 1 cut(s) 554
Bsu15I ATCGAT 3 cut(s) 1194, 1230, 1449
Bsu36I CCTNAGG 2 cut(s) 377, 426
BsuRI GGCC 1 cut(s) 830
BsuTUI ATCGAT 3 cut(s) 1194, 1230, 1449
BtgI CCRYGG 1 cut(s) 449
BtsIMutI CAGTG 2 cut(s) 183, 747
Cac8I GCNNGC 1 cut(s) 1149
CfoI GCGC 1 cut(s) 505
Cfr13I GGNCC 5 cut(s) 828, 870, 895, 1040, 1515
Cfr42I CCGCGG 1 cut(s) 452
ClaI ATCGAT 3 cut(s) 1194, 1230, 1449
CpoI CGGWCCG 1 cut(s) 895
CseI GACGC 1 cut(s) 456
Csp6I GTAC 3 cut(s) 418, 443, 877
CspI CGGWCCG 1 cut(s) 895
CviAII CATG 6 cut(s) 295, 348, 574, 713, 1172, 1499
CviQI GTAC 3 cut(s) 418, 443, 877
DdeI CTNAG 4 cut(s) 377, 426, 750, 1213
DpnI GATC 7 cut(s) 120, 357, 790, 1193, 1229, 1249, 1366
DpnII GATC 7 cut(s) 118, 355, 788, 1191, 1227, 1247, 1364
DriI GACNNNNNGTC 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 471
Eam1105I GACNNNNNGTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 471
Eco130I CCWWGG 1 cut(s) 1433
Eco31I GGTCTC 1 cut(s) 852
Eco32I GATATC 1 cut(s) 1457
Eco47I GGWCC 4 cut(s) 870, 895, 1040, 1515
Eco72I CACGTG 1 cut(s) 473
Eco81I CCTNAGG 2 cut(s) 377, 426
EcoRV GATATC 1 cut(s) 1457
EcoT14I CCWWGG 1 cut(s) 1433
ErhI CCWWGG 1 cut(s) 1433
Esp3I CGTCTC 2 cut(s) 407, 859
FaeI CATG 6 cut(s) 298, 351, 577, 716, 1175, 1502
FaqI GGGAC 2 cut(s) 444, 1021
FatI CATG 6 cut(s) 294, 347, 573, 712, 1171, 1498
FauI CCCGC 1 cut(s) 997
FblI GTMKAC 1 cut(s) 553
Fnu4HI GCNGC 3 cut(s) 465, 831, 961
Fsp4HI GCNGC 3 cut(s) 465, 831, 961
FspBI CTAG 7 cut(s) 404, 540, 653, 884, 1202, 1245, 1281
GlaI GCGC 1 cut(s) 504
GluI GCNGC 3 cut(s) 465, 831, 961
GsuI CTGGAG 2 cut(s) 798, 930
HaeIII GGCC 1 cut(s) 830
HapII CCGG 6 cut(s) 90, 227, 862, 1136, 1176, 1460
HgaI GACGC 1 cut(s) 456
HhaI GCGC 1 cut(s) 505
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 298, 351, 577, 716, 1175, 1502
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HincII GTYRAC 5 cut(s) 13, 75, 241, 535, 1156
HindII GTYRAC 5 cut(s) 13, 75, 241, 535, 1156
HindIII AAGCTT 3 cut(s) 643, 1145, 1344
HinfI GANTC 5 cut(s) 385, 432, 1048, 1472, 1495
HpaI GTTAAC 3 cut(s) 13, 75, 535
HpaII CCGG 6 cut(s) 90, 227, 862, 1136, 1176, 1460
HphI GGTGA 3 cut(s) 419, 574, 754
Hpy166II GTNNAC 8 cut(s) 13, 75, 241, 535, 554, 565, 889, 1156
Hpy188I TCNGA 4 cut(s) 629, 899, 971, 1477
Hpy188III TCNNGA 7 cut(s) 376, 389, 425, 520, 855, 1136, 1245
Hpy8I GTNNAC 8 cut(s) 13, 75, 241, 535, 554, 565, 889, 1156
Hpy99I CGWCG 1 cut(s) 1094
HpyAV CCTTC 4 cut(s) 266, 481, 600, 1096
HpyCH4III ACNGT 7 cut(s) 32, 163, 187, 422, 870, 895, 1511
HpyCH4IV ACGT 8 cut(s) 5, 15, 36, 342, 416, 441, 472, 1253
HpyCH4V TGCA 4 cut(s) 464, 712, 940, 1446
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 95
HpyF3I CTNAG 4 cut(s) 377, 426, 750, 1213
HpySE526I ACGT 8 cut(s) 5, 15, 36, 342, 416, 441, 472, 1253
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 298, 351, 577, 716, 1175, 1502
HspAI GCGC 1 cut(s) 503
Kpn2I TCCGGA 1 cut(s) 1135
KspAI GTTAAC 3 cut(s) 13, 75, 535
KspI CCGCGG 1 cut(s) 452
Kzo9I GATC 7 cut(s) 118, 355, 788, 1191, 1227, 1247, 1364
LmnI GCTCC 3 cut(s) 27, 630, 911
Lsp1109I GCAGC 1 cut(s) 476
LweI GCATC 4 cut(s) 277, 1250, 1427, 1455
MaeI CTAG 7 cut(s) 404, 540, 653, 884, 1202, 1245, 1281
MaeII ACGT 8 cut(s) 5, 15, 36, 342, 416, 441, 472, 1253
MaeIII GTNAC 6 cut(s) 32, 163, 211, 251, 468, 1254
MalI GATC 7 cut(s) 120, 357, 790, 1193, 1229, 1249, 1366
MbiI CCGCTC 1 cut(s) 960
MboI GATC 7 cut(s) 118, 355, 788, 1191, 1227, 1247, 1364
MboII GAAGA 9 cut(s) 324, 394, 466, 488, 959, 1043, 1219, 1335, 1342
MfeI CAATTG 1 cut(s) 805
MhlI GDGCHC 1 cut(s) 749
MluCI AATT 4 cut(s) 805, 1287, 1298, 1467
MlyI GAGTC 2 cut(s) 426, 1489
MmeI TCCRAC 2 cut(s) 169, 608
MroI TCCGGA 1 cut(s) 1135
MroXI GAANNNNTTC 1 cut(s) 1068
MslI CAYNNNNRTG 1 cut(s) 1128
MspA1I CMGCKG 1 cut(s) 451
MspI CCGG 6 cut(s) 90, 227, 862, 1136, 1176, 1460
MunI CAATTG 1 cut(s) 805
MvnI CGCG 2 cut(s) 451, 833
MwoI GCNNNNNNNGC 2 cut(s) 86, 95
NdeII GATC 7 cut(s) 118, 355, 788, 1191, 1227, 1247, 1364
NlaIII CATG 6 cut(s) 298, 351, 577, 716, 1175, 1502
NlaIV GGNNCC 2 cut(s) 829, 1041
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 468
NspI RCATGY 3 cut(s) 351, 577, 716
PcsI WCGNNNNNNNCGW 2 cut(s) 504, 1086
PdmI GAANNNNTTC 1 cut(s) 1068
PfeI GAWTC 3 cut(s) 385, 1048, 1472
PkrI GCNGC 3 cut(s) 466, 832, 962
Ple19I CGATCG 1 cut(s) 1230
PleI GAGTC 2 cut(s) 426, 1489
PmaCI CACGTG 1 cut(s) 473
PmlI CACGTG 1 cut(s) 473
PpsI GAGTC 2 cut(s) 426, 1489
Ppu21I YACGTR 2 cut(s) 442, 473
PshAI GACNNNNGTC 1 cut(s) 1499
PsiI TTATAA 1 cut(s) 158
Psp1406I AACGTT 2 cut(s) 15, 1253
PspCI CACGTG 1 cut(s) 473
PspN4I GGNNCC 2 cut(s) 829, 1041
PspPI GGNCC 5 cut(s) 828, 870, 895, 1040, 1515
PvuI CGATCG 1 cut(s) 1230
RsaI GTAC 3 cut(s) 419, 444, 878
RsaNI GTAC 3 cut(s) 418, 443, 877
RseI CAYNNNNRTG 1 cut(s) 1128
Rsr2I CGGWCCG 1 cut(s) 895
RsrII CGGWCCG 1 cut(s) 895
SacII CCGCGG 1 cut(s) 452
SatI GCNGC 3 cut(s) 465, 831, 961
Sau3AI GATC 7 cut(s) 118, 355, 788, 1191, 1227, 1247, 1364
Sau96I GGNCC 5 cut(s) 828, 870, 895, 1040, 1515
SchI GAGTC 2 cut(s) 426, 1489
SduI GDGCHC 1 cut(s) 749
SfaNI GCATC 4 cut(s) 277, 1250, 1427, 1455
Sfr303I CCGCGG 1 cut(s) 452
SgrBI CCGCGG 1 cut(s) 452
SinI GGWCC 4 cut(s) 870, 895, 1040, 1515
SmiMI CAYNNNNRTG 1 cut(s) 1128
SmlI CTYRAG 1 cut(s) 568
SmoI CTYRAG 1 cut(s) 568
Sse9I AATT 4 cut(s) 805, 1287, 1298, 1467
SsiI CCGC 8 cut(s) 266, 449, 451, 600, 831, 960, 1004, 1388
SspMI CTAG 7 cut(s) 404, 540, 653, 884, 1202, 1245, 1281
StyI CCWWGG 1 cut(s) 1433
TaaI ACNGT 7 cut(s) 32, 163, 187, 422, 870, 895, 1511
TaiI ACGT 8 cut(s) 8, 18, 39, 345, 419, 444, 475, 1256
TaqI TCGA 7 cut(s) 369, 507, 519, 931, 1194, 1230, 1449
TaqII GACCGA 1 cut(s) 1503
TasI AATT 4 cut(s) 805, 1287, 1298, 1467
TatI WGTACW 1 cut(s) 876
TauI GCSGC 2 cut(s) 833, 963
TfiI GAWTC 3 cut(s) 385, 1048, 1472
TscAI CASTG 2 cut(s) 190, 754
TseFI GTSAC 1 cut(s) 468
TseI GCWGC 1 cut(s) 464
Tsp45I GTSAC 1 cut(s) 468
TspDTI ATGAA 5 cut(s) 707, 1160, 1266, 1311, 1343
TspGWI ACGGA 3 cut(s) 348, 352, 1032
TspRI CASTG 2 cut(s) 190, 754
VpaK11BI GGWCC 4 cut(s) 870, 895, 1040, 1515
XbaI TCTAGA 1 cut(s) 1244
XceI RCATGY 3 cut(s) 351, 577, 716
XmiI GTMKAC 1 cut(s) 553
XmnI GAANNNNTTC 1 cut(s) 1068
XspI CTAG 7 cut(s) 404, 540, 653, 884, 1202, 1245, 1281
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.