AT2G46720

3-ketoacyl-coa synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012744
Physical Location & Seq
Forward (+)
19197330 .. 19200442
3113 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46720.1

Sequence Viewer

Length: 1401 bp
ATGTTCATTGCAATGGCAGATTTCAAAATTCTTTTGCTTATACTCATCCTTATATCTCTCTTTGAACTTGATCTACTTCATTTTCACCATGACTTCTTCTCTCCTTTTCCGGTCAAGATCGGTTTACTCCTGATATCCATCTTCTTCTATGCCTACTCAACCACCCGGTCTAAACCGGTTTACCTAGTGGATTTCTCATGTCACCAACCCACGGATTCTTGCAAAATCTCATCCGAAACGTTCTTCAACATGGCCAAAGGCGCTCAACTCTACACCGATGAAACAATCCAATTCATGACGAGGATATTAAACCGGTCCGGTTTAGGAGACGATACGTACTCCCCACGTTGCATGTTAACCTCTCCACCAACTCCATCAATGTACGAGGCGAGACATGAATCCGAATTAGTTATCTTCGGAGCTCTTAACTCACTATTCAAGAAAACCGGAATCGAACCGAGAGAAGTCGGAATCTTCATTGTAAACTGCAGCTTGTTTAACCCTAACCCATCTCTCTCGTCCATGATCGTAAACCGGTACAAGCTTAAAACCGACGTCAAAACTTACAATCTCTCCGGTATGGGATGCAGCGCCGGCGCAATCTCCGTCGACCTCGCCACAAATCTACTAAAGGCAAACCCTAATACCTACGCAGTTATTGTTAGTACGGAGAACATGACCCTAAGCATGTATCGAGGCAACGACCGGTCAATGTTAGTCCCTAACTGTCTATTCCGAGTAGGTGGCGCTGCGGTTATGCTCTCAAACCGGAGTCAAGACCGAGTCCGGTCTAAGTACGAATTGACTCATATTGTAAGGACTCACAAAGGCTCTAGCGATAAACACTACACTTGTGCTGAACAAAAAGAAGATAGTAAAGGTATCGTTGGAGTCGCACTCTCTAAAGAACTAACGGTTGTTGCTGGTGACTCGTTAAAGACGAATCTAACAGCACTTGGTCCGCTTGTGTTGCCTTTATCTGAAAAACTCCGGTTTATCCTCTTTTTGGTAAAGAGTAAGCTTTTCCGGTTAAAGGTTAGTCCATATGTTCCGGATTTTAAACTATGTTTCAAGCATTTCTGTATTCACGCTGGTGGTAGAGCGTTACTTGACGCGGTTGAAAAAGGTCTTGGACTTAGTGAGTTTGATCTTGAGCCGTCTCGGATGACTTTGCACCGCTTTGGAAACACTTCAAGCTCGTCGCTGTGGTACGAGCTGGCTTACGTGGAGGCTAAATGTCGGGTCAAACGAGGAGATAGGGTTTGGCAGTTGGCGTTTGGGTCGGGTTTTAAATGTAATAGTATTGTGTGGAGAGCGTTGAGAACGATTCCGGCTAACGAGTCATTGGTGGGTAACCCGTGGGGTGACTCGGTTCATAAGTATCCAGTTCACGTGACCTAA

Protein Analysis

466

Amino Acids

52.18

Weight (kDa)

9.15

Isoelectric Point (pI)

34.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 53 - 341 7e-136 FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C PF08541 358 - 438 3.3e-10 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C PF02797 360 - 439 1.1e-08 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012744)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15090 AT2G46720 AT3G10280 AT4G34250 AT4G34520
fragaria_vesca FvH4_7g28500
malus_domestica MD01G1188700.v1.1
prunus_persica Prupe.2G285400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0375881
rosa_laevigata RLG00000026647
rosa_multiflora Rmu_sc0001943.1_g000009
rosa_roxburghii Rroxscaffold_4G00282560
rosa_rugosa Rorug01G0392100
rosa_samantha Rh1AG404000 Rh1BG367400 Rh1CG380200 Rh1DG397400
rosa_wichuraiana Rw0G000970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 558
AccI GTMKAC 1 cut(s) 609
AccII CGCG 1 cut(s) 1115
AccIII TCCGGA 1 cut(s) 1051
AciI CCGC 4 cut(s) 752, 962, 1115, 1177
AclI AACGTT 1 cut(s) 239
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 27
AcvI CACGTG 1 cut(s) 1393
AcyI GRCGYC 1 cut(s) 555
AfaI GTAC 6 cut(s) 338, 383, 539, 667, 797, 1211
AfiI CCNNNNNNNGG 3 cut(s) 211, 1006, 1033
AgeI ACCGGT 4 cut(s) 175, 312, 534, 705
AgsI TTSAA 7 cut(s) 25, 65, 247, 439, 1072, 1121, 1194
AjuI GAANNNNNNNTTGG 2 cut(s) 1113, 1145
AleI CACNNNNGTG 1 cut(s) 1092
AluBI AGCT 6 cut(s) 422, 492, 544, 1021, 1197, 1216
AluI AGCT 6 cut(s) 422, 492, 544, 1021, 1197, 1216
Alw21I GWGCWC 1 cut(s) 424
Alw26I GTCTC 3 cut(s) 321, 385, 1164
Aor13HI TCCGGA 1 cut(s) 1051
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 3 cut(s) 489, 588, 749
ApoI RAATTY 1 cut(s) 27
AsiGI ACCGGT 4 cut(s) 175, 312, 534, 705
Asp700I GAANNNNTTC 1 cut(s) 1189
AspLEI GCGC 4 cut(s) 263, 593, 599, 749
AspS9I GGNCC 2 cut(s) 315, 959
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 4 cut(s) 77, 194, 938, 1376
AvaII GGWCC 2 cut(s) 315, 959
BalI TGGCCA 1 cut(s) 254
BanII GRGCYC 1 cut(s) 424
BbrPI CACGTG 1 cut(s) 1393
Bbv12I GWGCWC 1 cut(s) 424
BbvI GCAGC 3 cut(s) 501, 600, 736
BccI CCATC 3 cut(s) 146, 382, 517
BceAI ACGGC 1 cut(s) 1141
BciVI GTATCC 1 cut(s) 1392
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 3 cut(s) 321, 385, 1164
BfaI CTAG 2 cut(s) 185, 834
BfmI CTRYAG 1 cut(s) 487
BfoI RGCGCY 3 cut(s) 264, 594, 750
BfuI GTATCC 1 cut(s) 1392
BisI GCNGC 3 cut(s) 490, 589, 750
BlsI GCNGC 3 cut(s) 491, 590, 751
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 2 cut(s) 315, 959
BmgT120I GGNCC 2 cut(s) 315, 959
BmrFI CCNGG 1 cut(s) 166
BmsI GCATC 1 cut(s) 575
BplI GAGNNNNNCTC 2 cut(s) 882, 914
Bpu10I CCTNAGC 1 cut(s) 683
BpuEI CTTGAG 1 cut(s) 1172
BpuMI CCSGG 1 cut(s) 166
BsaAI YACGTR 3 cut(s) 336, 1225, 1393
BsaBI GATNNNNATC 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 555
BsaJI CCNNGG 2 cut(s) 210, 1358
BsaXI ACNNNNNCTCC 4 cut(s) 557, 587, 1245, 1275
Bsc4I CCNNNNNNNGG 3 cut(s) 211, 1006, 1033
Bse118I RCCGGY 5 cut(s) 175, 312, 534, 593, 705
Bse1I ACTGG 1 cut(s) 1385
Bse3DI GCAATG 2 cut(s) 6, 18
Bse8I GATNNNNATC 1 cut(s) 137
BseAI TCCGGA 1 cut(s) 1051
BseDI CCNNGG 2 cut(s) 210, 1358
BseGI GGATG 4 cut(s) 45, 230, 590, 1170
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 3 cut(s) 211, 1006, 1033
BseMI GCAATG 2 cut(s) 6, 18
BseNI ACTGG 1 cut(s) 1385
BseRI GAGGAG 1 cut(s) 1266
BseXI GCAGC 3 cut(s) 501, 600, 736
Bsh1236I CGCG 1 cut(s) 1115
Bsh1285I CGRYCG 1 cut(s) 706
BshFI GGCC 1 cut(s) 254
BshTI ACCGGT 4 cut(s) 175, 312, 534, 705
BsiEI CGRYCG 1 cut(s) 706
BsiHKAI GWGCWC 1 cut(s) 424
BslFI GGGAC 1 cut(s) 704
BslI CCNNNNNNNGG 3 cut(s) 211, 1006, 1033
BsmAI GTCTC 3 cut(s) 321, 385, 1164
BsmBI CGTCTC 2 cut(s) 321, 1164
BsmFI GGGAC 1 cut(s) 704
BsnI GGCC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 424
Bsp13I TCCGGA 1 cut(s) 1051
Bsp143I GATC 4 cut(s) 70, 117, 525, 1147
BspACI CCGC 4 cut(s) 752, 962, 1115, 1177
BspANI GGCC 1 cut(s) 254
BspEI TCCGGA 1 cut(s) 1051
BspFNI CGCG 1 cut(s) 1115
BspHI TCATGA 1 cut(s) 294
BspMAI CTGCAG 1 cut(s) 491
BsrDI GCAATG 2 cut(s) 6, 18
BsrFI RCCGGY 5 cut(s) 175, 312, 534, 593, 705
BsrI ACTGG 1 cut(s) 1385
BssAI RCCGGY 5 cut(s) 175, 312, 534, 593, 705
BssECI CCNNGG 2 cut(s) 210, 1358
BssMI GATC 4 cut(s) 70, 117, 525, 1147
BssNI GRCGYC 1 cut(s) 555
Bst4CI ACNGT 2 cut(s) 728, 916
BstACI GRCGYC 1 cut(s) 555
BstBAI YACGTR 3 cut(s) 336, 1225, 1393
BstC8I GCNNGC 2 cut(s) 595, 1218
BstDEI CTNAG 3 cut(s) 683, 792, 1136
BstDSI CCRYGG 2 cut(s) 210, 1358
BstEII GGTNACC 1 cut(s) 1352
BstF5I GGATG 4 cut(s) 45, 230, 590, 1170
BstFNI CGCG 1 cut(s) 1115
BstH2I RGCGCY 3 cut(s) 264, 594, 750
BstHHI GCGC 4 cut(s) 263, 593, 599, 749
BstKTI GATC 4 cut(s) 73, 120, 528, 1150
BstMAI GTCTC 3 cut(s) 321, 385, 1164
BstMBI GATC 4 cut(s) 70, 117, 525, 1147
BstMCI CGRYCG 1 cut(s) 706
BstMWI GCNNNNNNNGC 3 cut(s) 260, 594, 970
BstNSI RCATGY 2 cut(s) 355, 691
BstPI GGTNACC 1 cut(s) 1352
BstSCI CCNGG 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 487
BstSNI TACGTA 1 cut(s) 336
BstUI CGCG 1 cut(s) 1115
BstV1I GCAGC 3 cut(s) 501, 600, 736
BsuI GTATCC 1 cut(s) 1392
BsuRI GGCC 1 cut(s) 254
BtgI CCRYGG 2 cut(s) 210, 1358
BtsCI GGATG 4 cut(s) 45, 230, 590, 1170
Cac8I GCNNGC 2 cut(s) 595, 1218
CciI TCATGA 1 cut(s) 294
CfoI GCGC 4 cut(s) 263, 593, 599, 749
Cfr10I RCCGGY 5 cut(s) 175, 312, 534, 593, 705
Cfr13I GGNCC 2 cut(s) 315, 959
CpoI CGGWCCG 1 cut(s) 315
CseI GACGC 1 cut(s) 1121
Csp6I GTAC 6 cut(s) 337, 382, 538, 666, 796, 1210
CspAI ACCGGT 4 cut(s) 175, 312, 534, 705
CspI CGGWCCG 1 cut(s) 315
CviAII CATG 9 cut(s) 89, 198, 250, 295, 352, 395, 523, 676, 688
CviQI GTAC 6 cut(s) 337, 382, 538, 666, 796, 1210
DdeI CTNAG 3 cut(s) 683, 792, 1136
DpnI GATC 4 cut(s) 72, 119, 527, 1149
DpnII GATC 4 cut(s) 70, 117, 525, 1147
DraI TTTAAA 2 cut(s) 1060, 1291
EaeI YGGCCR 1 cut(s) 252
Ecl136II GAGCTC 1 cut(s) 422
Eco105I TACGTA 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 424
Eco32I GATATC 1 cut(s) 135
Eco47I GGWCC 2 cut(s) 315, 959
Eco53kI GAGCTC 1 cut(s) 422
Eco72I CACGTG 1 cut(s) 1393
Eco91I GGTNACC 1 cut(s) 1352
EcoICRI GAGCTC 1 cut(s) 422
EcoO65I GGTNACC 1 cut(s) 1352
EcoRV GATATC 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 424
Esp3I CGTCTC 2 cut(s) 321, 1164
FaeI CATG 9 cut(s) 92, 201, 253, 298, 355, 398, 526, 679, 691
FaqI GGGAC 1 cut(s) 704
FatI CATG 9 cut(s) 88, 197, 249, 294, 351, 394, 522, 675, 687
FauNDI CATATG 1 cut(s) 1045
FblI GTMKAC 1 cut(s) 609
Fnu4HI GCNGC 3 cut(s) 490, 589, 750
FokI GGATG 4 cut(s) 32, 217, 597, 1177
FriOI GRGCYC 1 cut(s) 424
Fsp4HI GCNGC 3 cut(s) 490, 589, 750
FspBI CTAG 2 cut(s) 185, 834
GlaI GCGC 4 cut(s) 262, 592, 598, 748
GluI GCNGC 3 cut(s) 490, 589, 750
HaeII RGCGCY 3 cut(s) 264, 594, 750
HaeIII GGCC 1 cut(s) 254
HgaI GACGC 1 cut(s) 1121
HhaI GCGC 4 cut(s) 263, 593, 599, 749
Hin1I GRCGYC 1 cut(s) 555
Hin1II CATG 9 cut(s) 92, 201, 253, 298, 355, 398, 526, 679, 691
Hin6I GCGC 4 cut(s) 261, 591, 597, 747
HinP1I GCGC 4 cut(s) 261, 591, 597, 747
HincII GTYRAC 2 cut(s) 357, 610
HindII GTYRAC 2 cut(s) 357, 610
HindIII AAGCTT 2 cut(s) 542, 1019
HpaI GTTAAC 1 cut(s) 357
HphI GGTGA 4 cut(s) 77, 194, 938, 1376
Hpy166II GTNNAC 7 cut(s) 125, 181, 357, 484, 532, 610, 1390
Hpy188I TCNGA 7 cut(s) 235, 403, 419, 470, 737, 982, 1164
Hpy188III TCNNGA 7 cut(s) 115, 130, 295, 439, 776, 1052, 1151
Hpy8I GTNNAC 7 cut(s) 125, 181, 357, 484, 532, 610, 1390
Hpy99I CGWCG 3 cut(s) 557, 611, 1204
HpyCH4III ACNGT 2 cut(s) 728, 916
HpyCH4IV ACGT 6 cut(s) 239, 335, 346, 555, 1224, 1392
HpyCH4V TGCA 6 cut(s) 11, 222, 351, 489, 588, 1174
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 594, 970
HpyF3I CTNAG 3 cut(s) 683, 792, 1136
HpySE526I ACGT 6 cut(s) 239, 335, 346, 555, 1224, 1392
Hsp92I GRCGYC 1 cut(s) 555
Hsp92II CATG 9 cut(s) 92, 201, 253, 298, 355, 398, 526, 679, 691
HspAI GCGC 4 cut(s) 261, 591, 597, 747
Kpn2I TCCGGA 1 cut(s) 1051
KroI GCCGGC 1 cut(s) 593
KroNI GCCGGC 1 cut(s) 595
KspAI GTTAAC 1 cut(s) 357
Kzo9I GATC 4 cut(s) 70, 117, 525, 1147
LmnI GCTCC 1 cut(s) 419
Lsp1109I GCAGC 3 cut(s) 501, 600, 736
LweI GCATC 1 cut(s) 575
MaeI CTAG 2 cut(s) 185, 834
MaeII ACGT 6 cut(s) 239, 335, 346, 555, 1224, 1392
MaeIII GTNAC 6 cut(s) 200, 926, 1104, 1352, 1364, 1393
MalI GATC 4 cut(s) 72, 119, 527, 1149
MboI GATC 4 cut(s) 70, 117, 525, 1147
MboII GAAGA 7 cut(s) 88, 133, 136, 235, 406, 466, 881
MhlI GDGCHC 1 cut(s) 424
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 4 cut(s) 27, 290, 404, 800
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 8 cut(s) 781, 792, 799, 814, 900, 923, 1349, 1361
MmeI TCCRAC 2 cut(s) 448, 868
MnlI CCTC 8 cut(s) 294, 370, 379, 623, 689, 1010, 1222, 1244
Mox20I TGGCCA 1 cut(s) 254
MreI CGCCGGCG 1 cut(s) 593
MroI TCCGGA 1 cut(s) 1051
MroNI GCCGGC 1 cut(s) 593
MroXI GAANNNNTTC 1 cut(s) 1189
MscI TGGCCA 1 cut(s) 254
MseI TTAA 9 cut(s) 308, 356, 426, 498, 546, 935, 1031, 1059, 1290
MslI CAYNNNNRTG 2 cut(s) 11, 1092
Msp20I TGGCCA 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 166
MvnI CGCG 1 cut(s) 1115
MwoI GCNNNNNNNGC 3 cut(s) 260, 594, 970
NaeI GCCGGC 1 cut(s) 595
NciI CCSGG 1 cut(s) 166
NdeI CATATG 1 cut(s) 1045
NdeII GATC 4 cut(s) 70, 117, 525, 1147
NgoMIV GCCGGC 1 cut(s) 593
NlaIII CATG 9 cut(s) 92, 201, 253, 298, 355, 398, 526, 679, 691
NmuCI GTSAC 4 cut(s) 200, 926, 1364, 1393
NspI RCATGY 2 cut(s) 355, 691
OliI CACNNNNGTG 1 cut(s) 1092
PagI TCATGA 1 cut(s) 294
PcsI WCGNNNNNNNCGW 2 cut(s) 938, 1246
PdiI GCCGGC 1 cut(s) 595
PdmI GAANNNNTTC 1 cut(s) 1189
PfeI GAWTC 6 cut(s) 215, 398, 450, 471, 943, 1327
PflFI GACNNNGTC 1 cut(s) 782
PinAI ACCGGT 4 cut(s) 175, 312, 534, 705
PkrI GCNGC 3 cut(s) 491, 590, 751
PleI GAGTC 8 cut(s) 780, 791, 799, 814, 899, 923, 1348, 1361
PmaCI CACGTG 1 cut(s) 1393
PmlI CACGTG 1 cut(s) 1393
PpsI GAGTC 8 cut(s) 780, 791, 799, 814, 899, 923, 1348, 1361
Ppu21I YACGTR 3 cut(s) 336, 1225, 1393
Psp124BI GAGCTC 1 cut(s) 424
Psp1406I AACGTT 1 cut(s) 239
PspCI CACGTG 1 cut(s) 1393
PspEI GGTNACC 1 cut(s) 1352
PspPI GGNCC 2 cut(s) 315, 959
PsrI GAACNNNNNNTAC 2 cut(s) 57, 89
PstI CTGCAG 1 cut(s) 491
PsyI GACNNNGTC 1 cut(s) 782
RsaI GTAC 6 cut(s) 338, 383, 539, 667, 797, 1211
RsaNI GTAC 6 cut(s) 337, 382, 538, 666, 796, 1210
RseI CAYNNNNRTG 2 cut(s) 11, 1092
Rsr2I CGGWCCG 1 cut(s) 315
RsrII CGGWCCG 1 cut(s) 315
SacI GAGCTC 1 cut(s) 424
SalI GTCGAC 1 cut(s) 608
SaqAI TTAA 9 cut(s) 308, 356, 426, 498, 546, 935, 1031, 1059, 1290
SatI GCNGC 3 cut(s) 490, 589, 750
Sau3AI GATC 4 cut(s) 70, 117, 525, 1147
Sau96I GGNCC 2 cut(s) 315, 959
SchI GAGTC 8 cut(s) 781, 792, 799, 814, 900, 923, 1349, 1361
ScrFI CCNGG 1 cut(s) 166
SduI GDGCHC 1 cut(s) 424
SfaNI GCATC 1 cut(s) 575
SfcI CTRYAG 1 cut(s) 487
SgrAI CRCCGGYG 1 cut(s) 593
SinI GGWCC 2 cut(s) 315, 959
SmiMI CAYNNNNRTG 2 cut(s) 11, 1092
SmlI CTYRAG 1 cut(s) 1151
SmoI CTYRAG 1 cut(s) 1151
SnaBI TACGTA 1 cut(s) 336
Sse9I AATT 4 cut(s) 27, 290, 404, 800
SsiI CCGC 4 cut(s) 752, 962, 1115, 1177
SspMI CTAG 2 cut(s) 185, 834
SstI GAGCTC 1 cut(s) 424
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 2 cut(s) 728, 916
TaiI ACGT 6 cut(s) 242, 338, 349, 558, 1227, 1395
TaqI TCGA 3 cut(s) 453, 609, 694
TaqII GACCGA 1 cut(s) 795
TasI AATT 4 cut(s) 27, 290, 404, 800
TfiI GAWTC 6 cut(s) 215, 398, 450, 471, 943, 1327
Tru1I TTAA 9 cut(s) 308, 356, 426, 498, 546, 935, 1031, 1059, 1290
Tru9I TTAA 9 cut(s) 308, 356, 426, 498, 546, 935, 1031, 1059, 1290
TseFI GTSAC 4 cut(s) 200, 926, 1364, 1393
TseI GCWGC 3 cut(s) 489, 588, 749
Tsp45I GTSAC 4 cut(s) 200, 926, 1364, 1393
TspDTI ATGAA 6 cut(s) 68, 283, 294, 411, 466, 1364
TspGWI ACGGA 3 cut(s) 227, 595, 683
Tth111I GACNNNGTC 1 cut(s) 782
VpaK11BI GGWCC 2 cut(s) 315, 959
XapI RAATTY 1 cut(s) 27
XceI RCATGY 2 cut(s) 355, 691
XmiI GTMKAC 1 cut(s) 609
XmnI GAANNNNTTC 1 cut(s) 1189
XspI CTAG 2 cut(s) 185, 834
ZraI GACGTC 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.