Rorug01G0392100

3-ketoacyl-CoA synthase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
50247586 .. 50249475
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0392100.1

Sequence Viewer

Length: 1815 bp
ATGGAGCTTCAAGAACCAAGGTTATGTGCATTTTGGTTTAAATCCCTTCATGTGATTACCCATCTCCTCCTTGTTATGAACTTCTTCCTACCTACCACTATTGCAAGATCATTTGGAAATGAAACCGATCGATTTGCTTTACTAAAATTCAAAGAATCCATAATCACTGACCCACTAGGGTTCTTGAACTCATGGAATGACTCCATTCACTTCTGCAACTGGCAAGGAATTACTTGCGGCAAGAGGCATCAAAGAGTAATGGCCTTGGACCTACAAGGTTATCATTTGAATGGAGCCATATCACCATACACTGGCAACCTCTCTTTTCTAAGGTCCATCAACCTTGGAAACAACAACTTCTCTGGCAAGATTCCACAGCAACTTGATCGTTTATTCCGCCTGCGCTATTTGAATGTAAGTTACAATATGCTGGAGGCAGATATTCCAGTCAATCTGACCTTCTGCCTGGAACTGAGTCACATGGTTTTAAGGTCAAACCGTCTTACAGGCACAATTCCACCAGACCTTGGCTCATTGGTGAAGCTTGTGTATCTAGATCTTGAGAAAAACAAATTGACAGGAGGTATCCCACCTTCCTTGGGAAATCTTTCATCAATCAGTTCACTTCTCCTAGCATATAACAATTTGGTGGGCAACGTTCCAGAGGACATTGGCCGATTGAGAAGCTTATTTCATTTCAACGTTGGTTGCAATAGACTCTCTGGTATGATACCTCCTTCCCTTTTTAACATATCATCTATGAAGTCCTTCGCACTTGTAAATAATAAGTTCAAGGGCAGTATTCCACCAGCCATAGGCTTCAACATGCCTAATCTCCAAGAATTGTACTTTGGCGCAAATGAACTCTCCGGGCAAATCCCATCTTCATTTTCCAATGCTTCTATTTATGCACTTGATGTTGGGGATAATAATTTTGTAGGGCAAGTTCCCAAAAGTTTTGGAGATCTTTCAGATCTCTCGTCACTCGATGTAAGTAACAATAATCTAGGAAGTTTTTCTGCCAATGATTTGGATTTTATAACATCCTTGGCCAATTGCAGCCAACTGGAAATACTTGATATGAGTTCCAACAATTTTGGAGGAGTGATCCCTGAAACATTAGAAAATCTCAACAATTTAATATTCTTGGCCCTGGCGGATAACCTGTTCAGAGGCACCATTCCTAACTCAATGGCCAAGTTAAAAAAGCTGCAAGTTTTGGTTTTAGAAGGTAATAGATTATCAGGACGGATCCCATCTTCCGTAGGAAACCTCACTCAATTGTATCAATTCGACTTGTCAGCAAATGACTTGGAAAGAAACATTCCTCCAAGTATTGGGAACTGCCAACATTTGCAGAGGTTGGATATATCAGGTAATAGGCTAAGTGGAGATATACCACCACAGGTGATTGGTCTTTTCCCCCTTGTCGCTCTCGACTTGTCACAAAACTCACTAACTGGCAGCTTGCCCATGGAAGTGGGTAAGCTGAAGAATATTTATTTCCTTGACATCTCTGAAAATAATTTAACTGGAGAAATTCCAGAAGTCATTGGTCACTGTATGCTACTTGAACTTCTTTACCTACAAGGGAATCTCTTTCAAGGTATGATACCTTCTTCTTTGGCTACTATAAAAGGTCTTCAATATCTAGATCTTTCACGAAACAACTTGTCAGGTCAAATTCCAAAAGACATACAAAGACTTACCTTCTTGCTCTATCTGAACCTGTCTTTCAATAATCTAGAAGGTGAAGTACCAAAAGAAGGAGCCTTTCGAAACACAAGCGCAATATCCTTTGTTGGAAATACCTAA

Protein Analysis

604

Amino Acids

66.68

Weight (kDa)

5.9

Isoelectric Point (pI)

29.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 41 - 79 2.9e-12 Leucine rich repeat N-terminal domain
LRR_14 PF23598 343 - 430 9.9e-08 Leucine-rich repeat region
LRR_8 PF13855 355 - 414 3e-08 Leucine rich repeat
LRR_14 PF23598 487 - 583 3.6e-07 Leucine-rich repeat region
LRR_8 PF13855 524 - 582 5.8e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012744)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1040
AccB1I GGYRCC 1 cut(s) 1175
AccB7I CCANNNNNTGG 3 cut(s) 311, 527, 1337
AciI CCGC 3 cut(s) 237, 397, 1157
AclI AACGTT 2 cut(s) 657, 702
AclWI GGATC 3 cut(s) 1102, 1246, 1259
AcoI YGGCCR 3 cut(s) 673, 1050, 1194
AcsI RAATTY 3 cut(s) 146, 1539, 1683
AcuI CTGAAG 1 cut(s) 1511
AfaI GTAC 2 cut(s) 848, 1758
AfiI CCNNNNNNNGG 6 cut(s) 311, 527, 599, 815, 1337, 1766
AjnI CCWGG 2 cut(s) 465, 1152
AjuI GAANNNNNNNTTGG 2 cut(s) 834, 866
AloI GAACNNNNNNTCC 2 cut(s) 1151, 1183
AluBI AGCT 6 cut(s) 7, 544, 687, 1210, 1467, 1489
AluI AGCT 6 cut(s) 7, 544, 687, 1210, 1467, 1489
AlwI GGATC 3 cut(s) 1102, 1246, 1259
AoxI GGCC 5 cut(s) 261, 673, 1050, 1149, 1194
ApeKI GCWGC 3 cut(s) 1059, 1210, 1464
ApoI RAATTY 3 cut(s) 146, 1539, 1683
Asp700I GAANNNNTTC 4 cut(s) 83, 607, 767, 1015
AspLEI GCGC 3 cut(s) 405, 857, 1790
AspS9I GGNCC 3 cut(s) 268, 333, 1150
AsuC2I CCSGG 1 cut(s) 871
AsuHPI GGTGA 4 cut(s) 294, 550, 1420, 1763
AsuII TTCGAA 1 cut(s) 1777
AvaII GGWCC 2 cut(s) 268, 333
BalI TGGCCA 2 cut(s) 1052, 1196
BamHI GGATCC 1 cut(s) 1251
BanI GGYRCC 1 cut(s) 1175
BarI GAAGNNNNNNTAC 6 cut(s) 577, 609, 1600, 1632, 1740, 1772
BbsI GAAGAC 1 cut(s) 1634
BbvI GCAGC 3 cut(s) 1071, 1197, 1476
BccI CCATC 4 cut(s) 69, 344, 889, 1264
BcgI CGANNNNNNTGC 4 cut(s) 116, 150, 368, 402
BciT130I CCWGG 2 cut(s) 467, 1154
BciVI GTATCC 1 cut(s) 596
BcnI CCSGG 1 cut(s) 871
BfaI CTAG 6 cut(s) 176, 554, 632, 1007, 1652, 1745
BfuI GTATCC 1 cut(s) 596
BglII AGATCT 4 cut(s) 556, 964, 973, 1654
BisI GCNGC 4 cut(s) 238, 1060, 1211, 1465
BlsI GCNGC 4 cut(s) 239, 1061, 1212, 1466
Bme1390I CCNGG 3 cut(s) 467, 871, 1154
Bme18I GGWCC 2 cut(s) 268, 333
BmgT120I GGNCC 3 cut(s) 268, 333, 1150
BmiI GGNNCC 4 cut(s) 295, 1177, 1253, 1771
BmrFI CCNGG 3 cut(s) 467, 871, 1154
BmsI GCATC 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 1634
BpmI CTGGAG 2 cut(s) 452, 1554
Bpu14I TTCGAA 1 cut(s) 1777
BpuEI CTTGAG 1 cut(s) 581
BpuMI CCSGG 1 cut(s) 871
Bsa29I ATCGAT 1 cut(s) 130
BsaJI CCNNGG 8 cut(s) 17, 264, 343, 526, 597, 1047, 1152, 1473
Bsc4I CCNNNNNNNGG 6 cut(s) 311, 527, 599, 815, 1337, 1766
Bse1I ACTGG 6 cut(s) 224, 316, 446, 1071, 1465, 1537
BseBI CCWGG 2 cut(s) 467, 1154
BseCI ATCGAT 1 cut(s) 130
BseDI CCNNGG 8 cut(s) 17, 264, 343, 526, 597, 1047, 1152, 1473
BseGI GGATG 1 cut(s) 1043
BseLI CCNNNNNNNGG 6 cut(s) 311, 527, 599, 815, 1337, 1766
BseMII CTCAG 1 cut(s) 464
BseNI ACTGG 6 cut(s) 224, 316, 446, 1071, 1465, 1537
BseRI GAGGAG 2 cut(s) 56, 1116
BseXI GCAGC 3 cut(s) 1071, 1197, 1476
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 5 cut(s) 263, 675, 1052, 1151, 1196
BshNI GGYRCC 1 cut(s) 1175
BshVI ATCGAT 1 cut(s) 130
BsiEI CGRYCG 1 cut(s) 130
BsiSI CCGG 1 cut(s) 870
BslI CCNNNNNNNGG 6 cut(s) 311, 527, 599, 815, 1337, 1766
BsnI GGCC 5 cut(s) 263, 675, 1052, 1151, 1196
Bsp119I TTCGAA 1 cut(s) 1777
Bsp143I GATC 9 cut(s) 107, 127, 385, 556, 964, 973, 1107, 1251, 1654
Bsp19I CCATGG 1 cut(s) 1473
BspACI CCGC 3 cut(s) 237, 397, 1157
BspANI GGCC 5 cut(s) 263, 675, 1052, 1151, 1196
BspCNI CTCAG 1 cut(s) 465
BspDI ATCGAT 1 cut(s) 130
BspLI GGNNCC 4 cut(s) 295, 1177, 1253, 1771
BspPI GGATC 3 cut(s) 1102, 1246, 1259
BspT104I TTCGAA 1 cut(s) 1777
BspT107I GGYRCC 1 cut(s) 1175
BsrI ACTGG 6 cut(s) 224, 316, 446, 1071, 1465, 1537
BssECI CCNNGG 8 cut(s) 17, 264, 343, 526, 597, 1047, 1152, 1473
BssMI GATC 9 cut(s) 107, 127, 385, 556, 964, 973, 1107, 1251, 1654
BssT1I CCWWGG 7 cut(s) 17, 264, 343, 526, 597, 1047, 1473
Bst2UI CCWGG 2 cut(s) 467, 1154
Bst4CI ACNGT 2 cut(s) 500, 1562
BstBI TTCGAA 1 cut(s) 1777
BstC8I GCNNGC 2 cut(s) 401, 1469
BstDEI CTNAG 3 cut(s) 329, 473, 1385
BstDSI CCRYGG 1 cut(s) 1473
BstF5I GGATG 1 cut(s) 1043
BstHHI GCGC 3 cut(s) 405, 857, 1790
BstKTI GATC 9 cut(s) 110, 130, 388, 559, 967, 976, 1110, 1254, 1657
BstMBI GATC 9 cut(s) 107, 127, 385, 556, 964, 973, 1107, 1251, 1654
BstMCI CGRYCG 1 cut(s) 130
BstNI CCWGG 2 cut(s) 467, 1154
BstNSI RCATGY 1 cut(s) 829
BstSCI CCNGG 3 cut(s) 465, 869, 1152
BstV1I GCAGC 3 cut(s) 1071, 1197, 1476
BstV2I GAAGAC 1 cut(s) 1634
BstX2I RGATCY 5 cut(s) 556, 964, 973, 1251, 1654
BstXI CCANNNNNNTGG 2 cut(s) 1030, 1480
BstYI RGATCY 5 cut(s) 556, 964, 973, 1251, 1654
Bsu15I ATCGAT 1 cut(s) 130
BsuI GTATCC 1 cut(s) 596
BsuRI GGCC 5 cut(s) 263, 675, 1052, 1151, 1196
BsuTUI ATCGAT 1 cut(s) 130
BtgI CCRYGG 1 cut(s) 1473
BtsCI GGATG 1 cut(s) 1043
BtsIMutI CAGTG 3 cut(s) 165, 309, 1558
Cac8I GCNNGC 2 cut(s) 401, 1469
CfoI GCGC 3 cut(s) 405, 857, 1790
Cfr13I GGNCC 3 cut(s) 268, 333, 1150
ClaI ATCGAT 1 cut(s) 130
Csp6I GTAC 2 cut(s) 847, 1757
CspCI CAANNNNNGTGG 2 cut(s) 579, 614
CviAII CATG 5 cut(s) 50, 192, 481, 826, 1474
CviQI GTAC 2 cut(s) 847, 1757
DdeI CTNAG 3 cut(s) 329, 473, 1385
DpnI GATC 9 cut(s) 109, 129, 387, 558, 966, 975, 1109, 1253, 1656
DpnII GATC 9 cut(s) 107, 127, 385, 556, 964, 973, 1107, 1251, 1654
DraI TTTAAA 1 cut(s) 40
EaeI YGGCCR 3 cut(s) 673, 1050, 1194
EciI GGCGGA 2 cut(s) 386, 1172
Eco130I CCWWGG 7 cut(s) 17, 264, 343, 526, 597, 1047, 1473
Eco47I GGWCC 2 cut(s) 268, 333
Eco57I CTGAAG 1 cut(s) 1511
EcoRII CCWGG 2 cut(s) 465, 1152
EcoT14I CCWWGG 7 cut(s) 17, 264, 343, 526, 597, 1047, 1473
ErhI CCWWGG 7 cut(s) 17, 264, 343, 526, 597, 1047, 1473
FaeI CATG 5 cut(s) 53, 195, 484, 829, 1477
FatI CATG 5 cut(s) 49, 191, 480, 825, 1473
Fnu4HI GCNGC 4 cut(s) 238, 1060, 1211, 1465
FokI GGATG 1 cut(s) 1030
Fsp4HI GCNGC 4 cut(s) 238, 1060, 1211, 1465
FspBI CTAG 6 cut(s) 176, 554, 632, 1007, 1652, 1745
GlaI GCGC 3 cut(s) 404, 856, 1789
GluI GCNGC 4 cut(s) 238, 1060, 1211, 1465
GsuI CTGGAG 2 cut(s) 452, 1554
HaeIII GGCC 5 cut(s) 263, 675, 1052, 1151, 1196
HapII CCGG 1 cut(s) 870
HhaI GCGC 3 cut(s) 405, 857, 1790
Hin1II CATG 5 cut(s) 53, 195, 484, 829, 1477
Hin6I GCGC 3 cut(s) 403, 855, 1788
HinP1I GCGC 3 cut(s) 403, 855, 1788
HindIII AAGCTT 2 cut(s) 542, 685
HinfI GANTC 6 cut(s) 155, 200, 370, 475, 717, 1594
HpaII CCGG 1 cut(s) 870
HphI GGTGA 4 cut(s) 294, 550, 1420, 1763
Hpy166II GTNNAC 1 cut(s) 623
Hpy188I TCNGA 5 cut(s) 456, 973, 1172, 1519, 1725
Hpy8I GTNNAC 1 cut(s) 623
HpyCH4III ACNGT 2 cut(s) 500, 1562
HpyCH4IV ACGT 2 cut(s) 657, 702
HpyCH4V TGCA 8 cut(s) 29, 104, 216, 711, 911, 1059, 1213, 1357
HpyF3I CTNAG 3 cut(s) 329, 473, 1385
HpySE526I ACGT 2 cut(s) 657, 702
Hsp92II CATG 5 cut(s) 53, 195, 484, 829, 1477
HspAI GCGC 3 cut(s) 403, 855, 1788
Kzo9I GATC 9 cut(s) 107, 127, 385, 556, 964, 973, 1107, 1251, 1654
LmnI GCTCC 3 cut(s) 4, 293, 1769
Lsp1109I GCAGC 3 cut(s) 1071, 1197, 1476
LweI GCATC 1 cut(s) 256
MaeI CTAG 6 cut(s) 176, 554, 632, 1007, 1652, 1745
MaeII ACGT 2 cut(s) 657, 702
MaeIII GTNAC 6 cut(s) 419, 476, 981, 995, 1443, 1556
MalI GATC 9 cut(s) 109, 129, 387, 558, 966, 975, 1109, 1253, 1656
MboI GATC 9 cut(s) 107, 127, 385, 556, 964, 973, 1107, 1251, 1654
MboII GAAGA 6 cut(s) 76, 876, 1251, 1504, 1611, 1634
MfeI CAATTG 2 cut(s) 1054, 1280
MflI RGATCY 5 cut(s) 556, 964, 973, 1251, 1654
MlsI TGGCCA 2 cut(s) 1052, 1196
MluNI TGGCCA 2 cut(s) 1052, 1196
MlyI GAGTC 3 cut(s) 194, 484, 711
MmeI TCCRAC 3 cut(s) 1113, 1344, 1783
Mox20I TGGCCA 2 cut(s) 1052, 1196
MroXI GAANNNNTTC 4 cut(s) 83, 607, 767, 1015
MscI TGGCCA 2 cut(s) 1052, 1196
MseI TTAA 6 cut(s) 39, 488, 747, 1139, 1202, 1529
MslI CAYNNNNRTG 2 cut(s) 288, 1478
Msp20I TGGCCA 2 cut(s) 1052, 1196
MspI CCGG 1 cut(s) 870
MspR9I CCNGG 3 cut(s) 467, 871, 1154
MunI CAATTG 2 cut(s) 1054, 1280
MvaI CCWGG 2 cut(s) 467, 1154
NciI CCSGG 1 cut(s) 871
NcoI CCATGG 1 cut(s) 1473
NdeII GATC 9 cut(s) 107, 127, 385, 556, 964, 973, 1107, 1251, 1654
NlaIII CATG 5 cut(s) 53, 195, 484, 829, 1477
NlaIV GGNNCC 4 cut(s) 295, 1177, 1253, 1771
NmuCI GTSAC 4 cut(s) 476, 981, 1443, 1556
NspI RCATGY 1 cut(s) 829
NspV TTCGAA 1 cut(s) 1777
PdmI GAANNNNTTC 4 cut(s) 83, 607, 767, 1015
PfeI GAWTC 3 cut(s) 155, 370, 1594
PflMI CCANNNNNTGG 3 cut(s) 311, 527, 1337
PkrI GCNGC 4 cut(s) 239, 1061, 1212, 1466
Ple19I CGATCG 1 cut(s) 130
PleI GAGTC 3 cut(s) 194, 483, 711
PpsI GAGTC 3 cut(s) 194, 483, 711
PsiI TTATAA 1 cut(s) 1040
Psp1406I AACGTT 2 cut(s) 657, 702
Psp6I CCWGG 2 cut(s) 465, 1152
PspGI CCWGG 2 cut(s) 465, 1152
PspN4I GGNNCC 4 cut(s) 295, 1177, 1253, 1771
PspPI GGNCC 3 cut(s) 268, 333, 1150
PsrI GAACNNNNNNTAC 2 cut(s) 930, 962
PsuI RGATCY 5 cut(s) 556, 964, 973, 1251, 1654
PvuI CGATCG 1 cut(s) 130
RsaI GTAC 2 cut(s) 848, 1758
RsaNI GTAC 2 cut(s) 847, 1757
RseI CAYNNNNRTG 2 cut(s) 288, 1478
SaqAI TTAA 6 cut(s) 39, 488, 747, 1139, 1202, 1529
SatI GCNGC 4 cut(s) 238, 1060, 1211, 1465
Sau3AI GATC 9 cut(s) 107, 127, 385, 556, 964, 973, 1107, 1251, 1654
Sau96I GGNCC 3 cut(s) 268, 333, 1150
SchI GAGTC 3 cut(s) 194, 484, 711
ScrFI CCNGG 3 cut(s) 467, 871, 1154
SfaNI GCATC 1 cut(s) 256
SfuI TTCGAA 1 cut(s) 1777
SinI GGWCC 2 cut(s) 268, 333
SmiMI CAYNNNNRTG 2 cut(s) 288, 1478
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
SsiI CCGC 3 cut(s) 237, 397, 1157
SspI AATATT 2 cut(s) 1143, 1498
SspMI CTAG 6 cut(s) 176, 554, 632, 1007, 1652, 1745
StyD4I CCNGG 3 cut(s) 465, 869, 1152
StyI CCWWGG 7 cut(s) 17, 264, 343, 526, 597, 1047, 1473
TaaI ACNGT 2 cut(s) 500, 1562
TaiI ACGT 2 cut(s) 660, 705
TaqI TCGA 5 cut(s) 130, 987, 1293, 1437, 1777
TatI WGTACW 1 cut(s) 846
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 3 cut(s) 155, 370, 1594
Tru1I TTAA 6 cut(s) 39, 488, 747, 1139, 1202, 1529
Tru9I TTAA 6 cut(s) 39, 488, 747, 1139, 1202, 1529
TscAI CASTG 3 cut(s) 172, 316, 1565
TseFI GTSAC 4 cut(s) 476, 981, 1443, 1556
TseI GCWGC 3 cut(s) 1059, 1210, 1464
Tsp45I GTSAC 4 cut(s) 476, 981, 1443, 1556
TspDTI ATGAA 8 cut(s) 38, 92, 135, 600, 683, 776, 876, 876
TspGWI ACGGA 2 cut(s) 1252, 1264
TspRI CASTG 3 cut(s) 172, 316, 1565
Van91I CCANNNNNTGG 3 cut(s) 311, 527, 1337
VpaK11BI GGWCC 2 cut(s) 268, 333
XapI RAATTY 3 cut(s) 146, 1539, 1683
XbaI TCTAGA 3 cut(s) 553, 1651, 1744
XceI RCATGY 1 cut(s) 829
XmnI GAANNNNTTC 4 cut(s) 83, 607, 767, 1015
XspI CTAG 6 cut(s) 176, 554, 632, 1007, 1652, 1745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.