FvH4_7g28500

3-ketoacyl-CoA synthase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
21124148 .. 21126907
2760 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28500.t1

Sequence Viewer

Length: 1425 bp
ATGGCACCTCTAGTTTCAAAGCAGATAGTTTCAACTCTCTCCCAATGTCTAGGACTTCTGGTGCTCATACTTGTAACATCCCTTGAAGCCTTGTTTCTCCTCCAAAAAAGTCCACCCATTTTCCACTTGATTAACCTCTCTTGCTTCACCATCTTCTTCATCCTCAAGCCTTACCTCTCCAAAAAGACTCACAAAATCTACTTGGTAGACTTCTCATGTCTAAAACCCCCAAGCCACTGCAAAGTCCCCTTCTCCAAATTCCTCAAGAACTCCTCCATGATTGAAGGTTTCGACAGCGAAAGCGTAGCTTTCATGGCCAACATCCTCGCTTCTTCCGGACAGAGCCAAGAGACTTATCTCCCTCCAGCCTTGCACCACATTCCTCCCAAAACCCACCACCATGAATACATCAAAGAAGTCCATATGGTACTTTTCCCCATCATGGATGACCTTTTGGCCAAAACCAAACTATCCCCTCAAGACATTGACATCCTAATAGTAAACTGCAGCGGTTTCAATCCCACTCCTTCTCTAACCTCCATTGTCATCAACCACTACTCAATGAAATCTGACATCAAGAGCTTCAACCTCTCCGGAATGGGCTGCAGCGCAGGCGCTTTGGGCATTGATATGGCCCAAAACCTCCTCCAGATTCACAAGAACTCATACGCCGTCGTTTTGAGCACAGAGATTCTATCAACAGGCTGGTATGCAGGTCATGAAAAGCCCAAGTTGATCCTCAACTGCCTCTTCAGAATGGGCAGCGCCGCCATTTTGCTCACAAACAAAAACCAAACATCCAAACATCCAAAGTACGAGCTCTTCAAAACTCTCAGAACGAATAAATCCTACGACGACAGAGCTTACCTCTCCACCATCCGAGAAGAAGACTCGGAAGGAAAACTCGGGGTCACCATCAAACGTGATCTCCTCCAAGTCGCCGGCGAGACGCTCCGAGCAAACGTCACCGTTTTGGGGTCGTCAATCCTTCCGTTGTCCGAGAAGTTCTGGCACGGCGTTTCCATAATCAGGAAGAGATTCTTGAACAAGTCTGCGGAGATTTACGTGCCGAATTTCAAGAGTGTGATAGAGCATTTCTGTCTGCCGGCGTCAGGGAGGCCGGTGATAAGGGAGATCGGAAAAGGGTTGAAGCTTGGAGATAGGGAAATGGAGGCTGCCGTGATGACGTTGCACCGGTTTGGGAACCAGTCGTCTTCTGCACTGTGGTATGAATTGGCGTACTTGGAGGGAAAAGAGAGAGTGAAGAAAGGTGACAAGGTTTGGCAGCTTGGGATGGGCACTGGGCCGAAGTGCACTAGTTTGGTTTGGAAGTGTATAAGGCCCATTGAGGGTGAGTCCAAGAGAGGCCCGTGGGCCGATTGCATCCATCGATATCCAATTGGAGCCCACGAAGAAGCTAATTAG

Protein Analysis

475

Amino Acids

52.99

Weight (kDa)

9.15

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 59 - 346 6.3e-109 FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C PF08541 363 - 444 3.3e-07 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012744)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 704
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 207
AccIII TCCGGA 2 cut(s) 335, 593
AciI CCGC 3 cut(s) 510, 768, 1055
AclWI GGATC 1 cut(s) 730
AcoI YGGCCR 2 cut(s) 315, 456
AcsI RAATTY 2 cut(s) 257, 1072
AcuI CTGAAG 1 cut(s) 736
AcyI GRCGYC 1 cut(s) 1109
AfaI GTAC 3 cut(s) 429, 815, 1241
AfiI CCNNNNNNNGG 5 cut(s) 442, 975, 1029, 1112, 1349
AgeI ACCGGT 1 cut(s) 1194
AhlI ACTAGT 1 cut(s) 1316
AluBI AGCT 7 cut(s) 308, 582, 820, 863, 1153, 1288, 1418
AluI AGCT 7 cut(s) 308, 582, 820, 863, 1153, 1288, 1418
Alw21I GWGCWC 4 cut(s) 66, 686, 822, 1316
Alw26I GTCTC 2 cut(s) 344, 941
Alw44I GTGCAC 1 cut(s) 1312
AlwI GGATC 1 cut(s) 730
Ama87I CYCGRG 1 cut(s) 905
Aor13HI TCCGGA 2 cut(s) 335, 593
AoxI GGCC 8 cut(s) 315, 456, 633, 1118, 1304, 1340, 1366, 1374
ApaLI GTGCAC 1 cut(s) 1312
ApeKI GCWGC 6 cut(s) 507, 603, 606, 762, 1175, 1285
ApoI RAATTY 2 cut(s) 257, 1072
AsiGI ACCGGT 1 cut(s) 1194
Asp700I GAANNNNTTC 1 cut(s) 1037
AspLEI GCGC 3 cut(s) 611, 617, 767
AspS9I GGNCC 5 cut(s) 634, 1304, 1341, 1367, 1374
AsuHPI GGTGA 6 cut(s) 139, 904, 958, 1135, 1283, 1364
AvaI CYCGRG 1 cut(s) 905
BaeGI GKGCMC 2 cut(s) 1301, 1316
BalI TGGCCA 2 cut(s) 317, 458
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 822, 1408
BarI GAAGNNNNNNTAC 2 cut(s) 806, 838
BbsI GAAGAC 2 cut(s) 894, 1206
Bbv12I GWGCWC 4 cut(s) 66, 686, 822, 1316
BbvI GCAGC 6 cut(s) 519, 590, 618, 774, 1162, 1297
BccI CCATC 6 cut(s) 158, 446, 884, 923, 1288, 1395
BceAI ACGGC 3 cut(s) 656, 1030, 1163
BcoDI GTCTC 2 cut(s) 344, 941
BcuI ACTAGT 1 cut(s) 1316
BfaI CTAG 3 cut(s) 11, 50, 1317
BfmI CTRYAG 2 cut(s) 505, 604
BfoI RGCGCY 2 cut(s) 618, 768
BfuAI ACCTGC 1 cut(s) 704
BisI GCNGC 7 cut(s) 508, 604, 607, 763, 768, 1176, 1286
BlsI GCNGC 7 cut(s) 509, 605, 608, 764, 769, 1177, 1287
BmeT110I CYCGRG 1 cut(s) 905
BmgT120I GGNCC 5 cut(s) 634, 1304, 1341, 1367, 1374
BmiI GGNNCC 3 cut(s) 6, 1205, 1405
BmrI ACTGGG 1 cut(s) 1311
BmsI GCATC 1 cut(s) 1392
BmuI ACTGGG 1 cut(s) 1311
BpiI GAAGAC 2 cut(s) 894, 1206
BplI GAGNNNNNCTC 2 cut(s) 852, 884
BpmI CTGGAG 2 cut(s) 348, 632
BpuEI CTTGAG 3 cut(s) 149, 248, 462
Bsa29I ATCGAT 1 cut(s) 1390
BsaAI YACGTR 1 cut(s) 1066
BsaHI GRCGYC 1 cut(s) 1109
BsaJI CCNNGG 1 cut(s) 1370
BsaWI WCCGGW 3 cut(s) 335, 593, 1194
BsaXI ACNNNNNCTCC 2 cut(s) 912, 942
Bsc4I CCNNNNNNNGG 5 cut(s) 442, 975, 1029, 1112, 1349
Bse118I RCCGGY 4 cut(s) 941, 1105, 1120, 1194
Bse1I ACTGG 2 cut(s) 1207, 1306
BseAI TCCGGA 2 cut(s) 335, 593
BseCI ATCGAT 1 cut(s) 1390
BseDI CCNNGG 1 cut(s) 1370
BseLI CCNNNNNNNGG 5 cut(s) 442, 975, 1029, 1112, 1349
BseMII CTCAG 1 cut(s) 847
BseNI ACTGG 2 cut(s) 1207, 1306
BseRI GAGGAG 4 cut(s) 89, 262, 635, 920
BseSI GKGCMC 2 cut(s) 1301, 1316
BseXI GCAGC 6 cut(s) 519, 590, 618, 774, 1162, 1297
BsgI GTGCAG 1 cut(s) 1203
BshFI GGCC 8 cut(s) 317, 458, 635, 1120, 1306, 1342, 1368, 1376
BshNI GGYRCC 1 cut(s) 4
BshTI ACCGGT 1 cut(s) 1194
BshVI ATCGAT 1 cut(s) 1390
BsiHKAI GWGCWC 4 cut(s) 66, 686, 822, 1316
BsiHKCI CYCGRG 1 cut(s) 905
BsiSI CCGG 6 cut(s) 336, 594, 942, 1106, 1121, 1195
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 5 cut(s) 442, 975, 1029, 1112, 1349
BsmAI GTCTC 2 cut(s) 344, 941
BsmBI CGTCTC 1 cut(s) 941
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 8 cut(s) 317, 458, 635, 1120, 1306, 1342, 1368, 1376
BsoBI CYCGRG 1 cut(s) 905
Bsp1286I GDGCHC 6 cut(s) 66, 686, 822, 1301, 1316, 1408
Bsp13I TCCGGA 2 cut(s) 335, 593
Bsp143I GATC 3 cut(s) 735, 925, 1134
BspACI CCGC 3 cut(s) 510, 768, 1055
BspANI GGCC 8 cut(s) 317, 458, 635, 1120, 1306, 1342, 1368, 1376
BspCNI CTCAG 1 cut(s) 846
BspDI ATCGAT 1 cut(s) 1390
BspEI TCCGGA 2 cut(s) 335, 593
BspHI TCATGA 1 cut(s) 718
BspLI GGNNCC 3 cut(s) 6, 1205, 1405
BspMAI CTGCAG 2 cut(s) 509, 608
BspMI ACCTGC 1 cut(s) 704
BspPI GGATC 1 cut(s) 730
BspQI GCTCTTC 1 cut(s) 827
BspT107I GGYRCC 1 cut(s) 4
BsrFI RCCGGY 4 cut(s) 941, 1105, 1120, 1194
BsrI ACTGG 2 cut(s) 1207, 1306
BssAI RCCGGY 4 cut(s) 941, 1105, 1120, 1194
BssECI CCNNGG 1 cut(s) 1370
BssMI GATC 3 cut(s) 735, 925, 1134
BssNI GRCGYC 1 cut(s) 1109
Bst4CI ACNGT 2 cut(s) 970, 1224
Bst6I CTCTTC 3 cut(s) 755, 827, 1028
BstACI GRCGYC 1 cut(s) 1109
BstBAI YACGTR 1 cut(s) 1066
BstC8I GCNNGC 3 cut(s) 613, 943, 1107
BstDEI CTNAG 1 cut(s) 833
BstDSI CCRYGG 1 cut(s) 1370
BstEII GGTNACC 1 cut(s) 910
BstH2I RGCGCY 2 cut(s) 618, 768
BstHHI GCGC 3 cut(s) 611, 617, 767
BstKTI GATC 3 cut(s) 738, 928, 1137
BstMAI GTCTC 2 cut(s) 344, 941
BstMBI GATC 3 cut(s) 735, 925, 1134
BstMWI GCNNNNNNNGC 3 cut(s) 314, 612, 621
BstPI GGTNACC 1 cut(s) 910
BstSFI CTRYAG 2 cut(s) 505, 604
BstSLI GKGCMC 2 cut(s) 1301, 1316
BstV1I GCAGC 6 cut(s) 519, 590, 618, 774, 1162, 1297
BstV2I GAAGAC 2 cut(s) 894, 1206
Bsu15I ATCGAT 1 cut(s) 1390
BsuRI GGCC 8 cut(s) 317, 458, 635, 1120, 1306, 1342, 1368, 1376
BsuTUI ATCGAT 1 cut(s) 1390
BtgI CCRYGG 1 cut(s) 1370
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 3 cut(s) 235, 1220, 1299
BveI ACCTGC 1 cut(s) 704
Cac8I GCNNGC 3 cut(s) 613, 943, 1107
CciI TCATGA 1 cut(s) 718
CfoI GCGC 3 cut(s) 611, 617, 767
Cfr10I RCCGGY 4 cut(s) 941, 1105, 1120, 1194
Cfr13I GGNCC 5 cut(s) 634, 1304, 1341, 1367, 1374
ClaI ATCGAT 1 cut(s) 1390
CseI GACGC 2 cut(s) 958, 1098
Csp6I GTAC 3 cut(s) 428, 814, 1240
CspAI ACCGGT 1 cut(s) 1194
CviAII CATG 6 cut(s) 216, 277, 313, 401, 442, 719
CviQI GTAC 3 cut(s) 428, 814, 1240
DdeI CTNAG 1 cut(s) 833
DpnI GATC 3 cut(s) 737, 927, 1136
DpnII GATC 3 cut(s) 735, 925, 1134
EaeI YGGCCR 2 cut(s) 315, 456
Eam1104I CTCTTC 3 cut(s) 755, 827, 1028
EarI CTCTTC 3 cut(s) 755, 827, 1028
Ecl136II GAGCTC 1 cut(s) 820
Eco24I GRGCYC 2 cut(s) 822, 1408
Eco32I GATATC 1 cut(s) 1394
Eco53kI GAGCTC 1 cut(s) 820
Eco57I CTGAAG 1 cut(s) 736
Eco88I CYCGRG 1 cut(s) 905
Eco91I GGTNACC 1 cut(s) 910
EcoICRI GAGCTC 1 cut(s) 820
EcoO65I GGTNACC 1 cut(s) 910
EcoRV GATATC 1 cut(s) 1394
EcoT38I GRGCYC 2 cut(s) 822, 1408
Esp3I CGTCTC 1 cut(s) 941
FaeI CATG 6 cut(s) 219, 280, 316, 404, 445, 722
FalI AAGNNNNNCTT 4 cut(s) 292, 324, 1025, 1057
FaqI GGGAC 1 cut(s) 230
FatI CATG 6 cut(s) 215, 276, 312, 400, 441, 718
FauNDI CATATG 1 cut(s) 423
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 7 cut(s) 508, 604, 607, 763, 768, 1176, 1286
FriOI GRGCYC 2 cut(s) 822, 1408
Fsp4HI GCNGC 7 cut(s) 508, 604, 607, 763, 768, 1176, 1286
FspBI CTAG 3 cut(s) 11, 50, 1317
GlaI GCGC 3 cut(s) 610, 616, 766
GluI GCNGC 7 cut(s) 508, 604, 607, 763, 768, 1176, 1286
GsuI CTGGAG 2 cut(s) 348, 632
HaeII RGCGCY 2 cut(s) 618, 768
HaeIII GGCC 8 cut(s) 317, 458, 635, 1120, 1306, 1342, 1368, 1376
HapII CCGG 6 cut(s) 336, 594, 942, 1106, 1121, 1195
HgaI GACGC 2 cut(s) 958, 1098
HhaI GCGC 3 cut(s) 611, 617, 767
Hin1I GRCGYC 1 cut(s) 1109
Hin1II CATG 6 cut(s) 219, 280, 316, 404, 445, 722
Hin6I GCGC 3 cut(s) 609, 615, 765
HinP1I GCGC 3 cut(s) 609, 615, 765
HindIII AAGCTT 1 cut(s) 1151
HinfI GANTC 6 cut(s) 187, 652, 691, 890, 1038, 1355
HpaII CCGG 6 cut(s) 336, 594, 942, 1106, 1121, 1195
HphI GGTGA 6 cut(s) 139, 904, 958, 1135, 1283, 1364
Hpy166II GTNNAC 4 cut(s) 113, 208, 502, 1314
Hpy188I TCNGA 8 cut(s) 571, 755, 836, 881, 895, 956, 1000, 1139
Hpy8I GTNNAC 4 cut(s) 113, 208, 502, 1314
Hpy99I CGWCG 2 cut(s) 677, 857
HpyAV CCTTC 5 cut(s) 259, 278, 537, 890, 998
HpyCH4III ACNGT 2 cut(s) 970, 1224
HpyCH4IV ACGT 4 cut(s) 922, 963, 1065, 1187
HpyCH4V TGCA 9 cut(s) 240, 373, 507, 606, 713, 1192, 1220, 1314, 1383
HpyF10VI GCNNNNNNNGC 3 cut(s) 314, 612, 621
HpyF3I CTNAG 1 cut(s) 833
HpySE526I ACGT 4 cut(s) 922, 963, 1065, 1187
Hsp92I GRCGYC 1 cut(s) 1109
Hsp92II CATG 6 cut(s) 219, 280, 316, 404, 445, 722
HspAI GCGC 3 cut(s) 609, 615, 765
Kpn2I TCCGGA 2 cut(s) 335, 593
KroI GCCGGC 2 cut(s) 941, 1105
KroNI GCCGGC 2 cut(s) 943, 1107
Kzo9I GATC 3 cut(s) 735, 925, 1134
LguI GCTCTTC 1 cut(s) 827
LmnI GCTCC 2 cut(s) 957, 1403
Lsp1109I GCAGC 6 cut(s) 519, 590, 618, 774, 1162, 1297
LweI GCATC 1 cut(s) 1392
MaeI CTAG 3 cut(s) 11, 50, 1317
MaeII ACGT 4 cut(s) 922, 963, 1065, 1187
MaeIII GTNAC 4 cut(s) 73, 910, 964, 1271
MalI GATC 3 cut(s) 737, 927, 1136
MboI GATC 3 cut(s) 735, 925, 1134
MfeI CAATTG 1 cut(s) 1398
MhlI GDGCHC 6 cut(s) 66, 686, 822, 1301, 1316, 1408
MlsI TGGCCA 2 cut(s) 317, 458
MluCI AATT 5 cut(s) 257, 1072, 1232, 1398, 1420
MluNI TGGCCA 2 cut(s) 317, 458
MlyI GAGTC 3 cut(s) 181, 884, 1364
Mox20I TGGCCA 2 cut(s) 317, 458
MreI CGCCGGCG 1 cut(s) 941
MroI TCCGGA 2 cut(s) 335, 593
MroNI GCCGGC 2 cut(s) 941, 1105
MroXI GAANNNNTTC 1 cut(s) 1037
MscI TGGCCA 2 cut(s) 317, 458
MseI TTAA 1 cut(s) 132
MslI CAYNNNNRTG 2 cut(s) 399, 629
Msp20I TGGCCA 2 cut(s) 317, 458
MspA1I CMGCKG 1 cut(s) 510
MspI CCGG 6 cut(s) 336, 594, 942, 1106, 1121, 1195
MunI CAATTG 1 cut(s) 1398
MwoI GCNNNNNNNGC 3 cut(s) 314, 612, 621
NaeI GCCGGC 2 cut(s) 943, 1107
NdeI CATATG 1 cut(s) 423
NdeII GATC 3 cut(s) 735, 925, 1134
NgoMIV GCCGGC 2 cut(s) 941, 1105
NlaIII CATG 6 cut(s) 219, 280, 316, 404, 445, 722
NlaIV GGNNCC 3 cut(s) 6, 1205, 1405
NmuCI GTSAC 3 cut(s) 910, 964, 1271
PagI TCATGA 1 cut(s) 718
PciSI GCTCTTC 1 cut(s) 827
PdiI GCCGGC 2 cut(s) 943, 1107
PdmI GAANNNNTTC 1 cut(s) 1037
PfeI GAWTC 3 cut(s) 652, 691, 1038
PinAI ACCGGT 1 cut(s) 1194
PkrI GCNGC 7 cut(s) 509, 605, 608, 764, 769, 1177, 1287
PleI GAGTC 3 cut(s) 181, 884, 1363
PpsI GAGTC 3 cut(s) 181, 884, 1363
Ppu21I YACGTR 1 cut(s) 1066
Psp124BI GAGCTC 1 cut(s) 822
PspEI GGTNACC 1 cut(s) 910
PspN4I GGNNCC 3 cut(s) 6, 1205, 1405
PspPI GGNCC 5 cut(s) 634, 1304, 1341, 1367, 1374
PstI CTGCAG 2 cut(s) 509, 608
RsaI GTAC 3 cut(s) 429, 815, 1241
RsaNI GTAC 3 cut(s) 428, 814, 1240
RseI CAYNNNNRTG 2 cut(s) 399, 629
SacI GAGCTC 1 cut(s) 822
SapI GCTCTTC 1 cut(s) 827
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 7 cut(s) 508, 604, 607, 763, 768, 1176, 1286
Sau3AI GATC 3 cut(s) 735, 925, 1134
Sau96I GGNCC 5 cut(s) 634, 1304, 1341, 1367, 1374
SchI GAGTC 3 cut(s) 181, 884, 1364
SduI GDGCHC 6 cut(s) 66, 686, 822, 1301, 1316, 1408
SfaNI GCATC 1 cut(s) 1392
SfcI CTRYAG 2 cut(s) 505, 604
SgrAI CRCCGGYG 1 cut(s) 941
SmiMI CAYNNNNRTG 2 cut(s) 399, 629
SmlI CTYRAG 3 cut(s) 164, 263, 477
SmoI CTYRAG 3 cut(s) 164, 263, 477
SpeI ACTAGT 1 cut(s) 1316
Sse9I AATT 5 cut(s) 257, 1072, 1232, 1398, 1420
SsiI CCGC 3 cut(s) 510, 768, 1055
SspMI CTAG 3 cut(s) 11, 50, 1317
SstI GAGCTC 1 cut(s) 822
TaaI ACNGT 2 cut(s) 970, 1224
TaiI ACGT 4 cut(s) 925, 966, 1068, 1190
TaqI TCGA 2 cut(s) 291, 1390
TasI AATT 5 cut(s) 257, 1072, 1232, 1398, 1420
TauI GCSGC 1 cut(s) 770
TfiI GAWTC 3 cut(s) 652, 691, 1038
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 3 cut(s) 242, 1227, 1306
TseFI GTSAC 3 cut(s) 910, 964, 1271
TseI GCWGC 6 cut(s) 507, 603, 606, 762, 1175, 1285
Tsp45I GTSAC 3 cut(s) 910, 964, 1271
TspDTI ATGAA 6 cut(s) 148, 301, 417, 578, 735, 1245
TspGWI ACGGA 1 cut(s) 981
TspRI CASTG 3 cut(s) 242, 1227, 1306
VneI GTGCAC 1 cut(s) 1312
XapI RAATTY 2 cut(s) 257, 1072
XmiI GTMKAC 1 cut(s) 207
XmnI GAANNNNTTC 1 cut(s) 1037
XspI CTAG 3 cut(s) 11, 50, 1317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.