Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0012744

Physical Location & Seq

Genomic Coordinates Forward (+)

28221243 .. 28223252

Gene Structure 2010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G285400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGAGCCTCACCTGCCAACTGCAATTCGCTCTCGCTATCCTAGACCCTATTACTTGCACTGTCCCTCCATTTATAAGCTTCTGCAGCTATAGACTCACTTTATTAACATCAACCTCGTCTCCACCACCAACCAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCATGGAACCTCCTTCTAAGCAATCCCATGATCCTCTGCTGCTCAATACCATTGAACCCGATATCCCCTCCACTCTTCTATCAAATAAGCAGCTTCATTCCGCTTTCTTGGAACTTCAAAGACTTTTGGTCCTCGTCCTTGTAGCATCAATTGAAGCCTTACTTATCCTACAAAACAAGGAACCCATTTTCCATTTCATTTATCTTTTTTGTCTTATCATTTTCTTCATCCTCAACCACTGCTTCTCCAATTCTGGTCAAGTCTCTTTGGTAGACTTCTCATGTTTGACGCCACCAAGCTCATGCAGAGTCCCCTTCTCTACCTTTCTTGGGAATGCCTCCAAGATTGAATCTTTTGATGCTCAAAGTCTAGCTTTCATGGCCAAAGTCCTTACTTCTTCAGGACAAGGCCAAGAAACCTATCTCCCACCAGCCTTGCATCACATTCCACCAAAATCCCATCACCAAGAATCCATCAAAGAAGTTCATATGGTGCTCTTCCCCATCATGGATGACCTGTTGGCCAAAACTAAACACTCTGCCCAAGACATTGACATTCTGATAGTGAACTGTAGTGGTTTCTGTCCCTCTCCTCTCTGCTCCATTCTCATCAACAAATACTCAATGAGAAGTGACATCAAGAGCTACAATCTCTCTGGCATGGGGTGTAGTGCAAGTGCTCTAGCCATTGATTTAGCTCAAAATCTTCTACAAGTTCACAACAACTCTGATGCCATTGTTCTTAGCACAGAAATTTTATCAACAGGTTGGTATGCAGGGCATGAGCAGCCCAAGTTGATCCTTAACTGCCTCTTCCGAATAGGCAGTGCAGCAATTTGGCTTACAAACAAAAAACAAGATATTAAGTCTTCAAAATATCAACTTTTATGGACGCTAAGAACCCAAAAAGCCTTTGATGACAGAGCTTATCTTTCAACCATACGTGAAGAGGACTCAAATGGAAAACTTGGCGTTACCATCAAGCGAGATATGCTAGAGTGGCTGGGGAGATCCTCCGTTGGAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009856 GO:0009922 GO:0012505 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048856 GO:0048868 GO:0050896 GO:0051704

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

403

Amino Acids

44.45

Weight (kDa)

6.85

Isoelectric Point (pI)

54.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15090 AT2G46720 AT3G10280 AT4G34250 AT4G34520
fragaria_vesca	FvH4_7g28500
malus_domestica	MD01G1188700.v1.1
prunus_persica	Prupe.2G285400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0375881
rosa_laevigata	RLG00000026647
rosa_multiflora	Rmu_sc0001943.1_g000009
rosa_roxburghii	Rroxscaffold_4G00282560
rosa_rugosa	Rorug01G0392100
rosa_samantha	Rh1AG404000 Rh1BG367400 Rh1CG380200 Rh1DG397400
rosa_wichuraiana	Rw0G000970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	74
AarI	CACCTGC	1 cut(s)	20
Acc36I	ACCTGC	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	453
AciI	CCGC	1 cut(s)	282
AclWI	GGATC	3 cut(s)	206, 973, 1185
AcoI	YGGCCR	2 cut(s)	561, 702
AcsI	RAATTY	1 cut(s)	933
AcuI	CTGAAG	1 cut(s)	564
AcyI	GRCGYC	1 cut(s)	470
AfiI	CCNNNNNNNGG	2 cut(s)	510, 688
AgsI	TTSAA	6 cut(s)	236, 299, 335, 530, 1053, 1116
AhdI	GACNNNNNGTC	1 cut(s)	308
AloI	GAACNNNNNNTCC	4 cut(s)	228, 260, 354, 386
AluBI	AGCT	8 cut(s)	78, 87, 274, 480, 554, 825, 878, 1106
AluI	AGCT	8 cut(s)	78, 87, 274, 480, 554, 825, 878, 1106
Alw21I	GWGCWC	2 cut(s)	678, 862
Alw26I	GTCTC	2 cut(s)	123, 448
AlwI	GGATC	3 cut(s)	206, 973, 1185
AoxI	GGCC	3 cut(s)	561, 589, 702
ApeKI	GCWGC	5 cut(s)	84, 220, 271, 967, 1010
ApoI	RAATTY	1 cut(s)	933
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	635
AvaII	GGWCC	1 cut(s)	310
BalI	TGGCCA	2 cut(s)	563, 704
BbsI	GAAGAC	1 cut(s)	1041
Bbv12I	GWGCWC	2 cut(s)	678, 862
BbvI	GCAGC	5 cut(s)	96, 207, 283, 979, 1022
BccI	CCATC	4 cut(s)	648, 662, 692, 1166
BcoDI	GTCTC	2 cut(s)	123, 448
BfaI	CTAG	4 cut(s)	41, 551, 863, 1175
BfmI	CTRYAG	3 cut(s)	82, 88, 751
BfuAI	ACCTGC	1 cut(s)	20
BisI	GCNGC	5 cut(s)	85, 221, 272, 968, 1011
BlsI	GCNGC	5 cut(s)	86, 222, 273, 969, 1012
Bme18I	GGWCC	1 cut(s)	310
BmeRI	GACNNNNNGTC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	2 cut(s)	189, 363
BmsI	GCATC	4 cut(s)	335, 529, 628, 901
BpiI	GAAGAC	1 cut(s)	1041
BsaAI	YACGTR	1 cut(s)	1124
BsaHI	GRCGYC	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	183
BsaXI	ACNNNNNCTCC	6 cut(s)	49, 79, 103, 133, 410, 440
Bsc4I	CCNNNNNNNGG	2 cut(s)	510, 688
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	2 cut(s)	408, 697
BseLI	CCNNNNNNNGG	2 cut(s)	510, 688
BseRI	GAGGAG	1 cut(s)	762
BseXI	GCAGC	5 cut(s)	96, 207, 283, 979, 1022
BseYI	CCCAGC	1 cut(s)	1183
BsgI	GTGCAG	1 cut(s)	1029
BshFI	GGCC	3 cut(s)	563, 591, 704
BsiHKAI	GWGCWC	2 cut(s)	678, 862
BslFI	GGGAC	3 cut(s)	47, 476, 750
BslI	CCNNNNNNNGG	2 cut(s)	510, 688
BsmAI	GTCTC	2 cut(s)	123, 448
BsmBI	CGTCTC	1 cut(s)	123
BsmFI	GGGAC	3 cut(s)	47, 476, 750
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	3 cut(s)	563, 591, 704
Bsp1286I	GDGCHC	2 cut(s)	678, 862
Bsp143I	GATC	3 cut(s)	211, 978, 1190
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	3 cut(s)	563, 591, 704
BspLI	GGNNCC	2 cut(s)	189, 363
BspMAI	CTGCAG	1 cut(s)	86
BspMI	ACCTGC	1 cut(s)	20
BspPI	GGATC	3 cut(s)	206, 973, 1185
BspQI	GCTCTTC	1 cut(s)	683
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	3 cut(s)	211, 978, 1190
BssNI	GRCGYC	1 cut(s)	470
BssT1I	CCWWGG	1 cut(s)	183
Bst4CI	ACNGT	2 cut(s)	61, 752
Bst6I	CTCTTC	4 cut(s)	261, 683, 998, 1122
BstACI	GRCGYC	1 cut(s)	470
BstBAI	YACGTR	1 cut(s)	1124
BstDEI	CTNAG	3 cut(s)	198, 923, 1076
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	408, 697
BstKTI	GATC	3 cut(s)	214, 981, 1193
BstMAI	GTCTC	2 cut(s)	123, 448
BstMBI	GATC	3 cut(s)	211, 978, 1190
BstMWI	GCNNNNNNNGC	6 cut(s)	12, 84, 560, 967, 1171, 1180
BstSFI	CTRYAG	3 cut(s)	82, 88, 751
BstV1I	GCAGC	5 cut(s)	96, 207, 283, 979, 1022
BstV2I	GAAGAC	1 cut(s)	1041
BstX2I	RGATCY	1 cut(s)	1190
BstYI	RGATCY	1 cut(s)	1190
BsuRI	GGCC	3 cut(s)	563, 591, 704
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	408, 697
BtsI	GCAGTG	2 cut(s)	418, 1012
BtsIMutI	CAGTG	3 cut(s)	57, 418, 1012
BveI	ACCTGC	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	310
CseI	GACGC	2 cut(s)	478, 1081
CspCI	CAANNNNNGTGG	2 cut(s)	597, 632
CviAII	CATG	8 cut(s)	184, 209, 462, 483, 559, 688, 841, 962
DdeI	CTNAG	3 cut(s)	198, 923, 1076
DpnI	GATC	3 cut(s)	213, 980, 1192
DpnII	GATC	3 cut(s)	211, 978, 1190
DriI	GACNNNNNGTC	1 cut(s)	308
EaeI	YGGCCR	2 cut(s)	561, 702
Eam1104I	CTCTTC	4 cut(s)	261, 683, 998, 1122
Eam1105I	GACNNNNNGTC	1 cut(s)	308
EarI	CTCTTC	4 cut(s)	261, 683, 998, 1122
Eco130I	CCWWGG	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	564
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	8 cut(s)	187, 212, 465, 486, 562, 691, 844, 965
FalI	AAGNNNNNCTT	4 cut(s)	327, 359, 538, 570
FaqI	GGGAC	3 cut(s)	47, 476, 750
FatI	CATG	8 cut(s)	183, 208, 461, 482, 558, 687, 840, 961
FauNDI	CATATG	1 cut(s)	669
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	5 cut(s)	85, 221, 272, 968, 1011
FokI	GGATG	2 cut(s)	395, 704
Fsp4HI	GCNGC	5 cut(s)	85, 221, 272, 968, 1011
FspBI	CTAG	4 cut(s)	41, 551, 863, 1175
GluI	GCNGC	5 cut(s)	85, 221, 272, 968, 1011
GsaI	CCCAGC	1 cut(s)	1187
HaeIII	GGCC	3 cut(s)	563, 591, 704
HgaI	GACGC	2 cut(s)	478, 1081
Hin1I	GRCGYC	1 cut(s)	470
Hin1II	CATG	8 cut(s)	187, 212, 465, 486, 562, 691, 844, 965
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	5 cut(s)	93, 489, 530, 650, 1133
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	3 cut(s)	454, 748, 898
Hpy188I	TCNGA	3 cut(s)	741, 910, 998
Hpy188III	TCNNGA	2 cut(s)	582, 820
Hpy8I	GTNNAC	3 cut(s)	454, 748, 898
HpyAV	CCTTC	2 cut(s)	204, 505
HpyCH4III	ACNGT	2 cut(s)	61, 752
HpyCH4IV	ACGT	2 cut(s)	1123, 1205
HpyCH4V	TGCA	8 cut(s)	22, 57, 84, 486, 619, 854, 956, 1010
HpyF10VI	GCNNNNNNNGC	6 cut(s)	12, 84, 560, 967, 1171, 1180
HpyF3I	CTNAG	3 cut(s)	198, 923, 1076
HpySE526I	ACGT	2 cut(s)	1123, 1205
Hsp92I	GRCGYC	1 cut(s)	470
Hsp92II	CATG	8 cut(s)	187, 212, 465, 486, 562, 691, 844, 965
Kzo9I	GATC	3 cut(s)	211, 978, 1190
LguI	GCTCTTC	1 cut(s)	683
LmnI	GCTCC	1 cut(s)	785
LpnPI	CCDG	9 cut(s)	25, 420, 567, 624, 710, 822, 930, 942, 1169
Lsp1109I	GCAGC	5 cut(s)	96, 207, 283, 979, 1022
LweI	GCATC	4 cut(s)	335, 529, 628, 901
MaeI	CTAG	4 cut(s)	41, 551, 863, 1175
MaeII	ACGT	2 cut(s)	1123, 1205
MaeIII	GTNAC	2 cut(s)	812, 1153
MalI	GATC	3 cut(s)	213, 980, 1192
MboI	GATC	3 cut(s)	211, 978, 1190
MboII	GAAGA	8 cut(s)	248, 397, 570, 670, 878, 985, 1041, 1139
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	1 cut(s)	1190
MhlI	GDGCHC	2 cut(s)	678, 862
MlsI	TGGCCA	2 cut(s)	563, 704
MluCI	AATT	5 cut(s)	23, 330, 430, 933, 1014
MluNI	TGGCCA	2 cut(s)	563, 704
MlyI	GAGTC	3 cut(s)	87, 498, 1127
MmeI	TCCRAC	1 cut(s)	1180
Mox20I	TGGCCA	2 cut(s)	563, 704
MscI	TGGCCA	2 cut(s)	563, 704
MseI	TTAA	3 cut(s)	104, 984, 1044
Msp20I	TGGCCA	2 cut(s)	563, 704
MunI	CAATTG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	520
MwoI	GCNNNNNNNGC	6 cut(s)	12, 84, 560, 967, 1171, 1180
NcoI	CCATGG	1 cut(s)	183
NdeI	CATATG	1 cut(s)	669
NdeII	GATC	3 cut(s)	211, 978, 1190
NlaIII	CATG	8 cut(s)	187, 212, 465, 486, 562, 691, 844, 965
NlaIV	GGNNCC	2 cut(s)	189, 363
NmuCI	GTSAC	1 cut(s)	812
PaqCI	CACCTGC	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	683
PctI	GAATGC	1 cut(s)	520
PfeI	GAWTC	2 cut(s)	530, 650
PkrI	GCNGC	5 cut(s)	86, 222, 273, 969, 1012
PleI	GAGTC	3 cut(s)	87, 497, 1127
PpsI	GAGTC	3 cut(s)	87, 497, 1127
Ppu21I	YACGTR	1 cut(s)	1124
PsiI	TTATAA	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	1183
PspN4I	GGNNCC	2 cut(s)	189, 363
PspPI	GGNCC	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	1190
SapI	GCTCTTC	1 cut(s)	683
SaqAI	TTAA	3 cut(s)	104, 984, 1044
SatI	GCNGC	5 cut(s)	85, 221, 272, 968, 1011
Sau3AI	GATC	3 cut(s)	211, 978, 1190
Sau96I	GGNCC	1 cut(s)	310
SchI	GAGTC	3 cut(s)	87, 498, 1127
SduI	GDGCHC	2 cut(s)	678, 862
SfaNI	GCATC	4 cut(s)	335, 529, 628, 901
SfcI	CTRYAG	3 cut(s)	82, 88, 751
SinI	GGWCC	1 cut(s)	310
Sse9I	AATT	5 cut(s)	23, 330, 430, 933, 1014
SsiI	CCGC	1 cut(s)	282
SspMI	CTAG	4 cut(s)	41, 551, 863, 1175
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	61, 752
TaiI	ACGT	2 cut(s)	1126, 1208
TasI	AATT	5 cut(s)	23, 330, 430, 933, 1014
TfiI	GAWTC	2 cut(s)	530, 650
Tru1I	TTAA	3 cut(s)	104, 984, 1044
Tru9I	TTAA	3 cut(s)	104, 984, 1044
TscAI	CASTG	3 cut(s)	64, 425, 1012
TseFI	GTSAC	1 cut(s)	812
TseI	GCWGC	5 cut(s)	84, 220, 271, 967, 1010
Tsp45I	GTSAC	1 cut(s)	812
TspDTI	ATGAA	5 cut(s)	266, 367, 397, 547, 656
TspGWI	ACGGA	1 cut(s)	1186
TspRI	CASTG	3 cut(s)	64, 425, 1012
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	1 cut(s)	933
XmiI	GTMKAC	1 cut(s)	453
XspI	CTAG	4 cut(s)	41, 551, 863, 1175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.