Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004335

Physical Location & Seq

Genomic Coordinates Forward (+)

6712895 .. 6714609

Gene Structure 1715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G15400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGACGGTGTCACCTACCAAAGATTCCCAACGGTGAAGATCCGTGAGCTTAAAGATGACTACGCCAAGTTCGAGCTTCGTGAAACCGACGTTTCAATGGCCAACGCTCTCCGTCGCGTAATGATCTCCGAAGTCCCCACCATGGCAATCCATCTCGTCAAAATCGAGGTTAATTCCTCTGTTCTCAACGACGAGTTCATTGCTCAACGACTTAGTCTCATCCCTCTCACTAGCGAGCGTGCTATGAGCATGCGGTTCTGTCAAGATTGTGAAGATTGTAATGGAGATGAACATTGCGAGTTCTGCTCTGTTGAGTTTCCCCTTAGTGCTAAGTGTGTTACTGACCAAACCCTAGATGTTACTAGTAGGGATCTCTACAGTGCTGATCCTACTGTTACTCCTGTTGATTTCACTAGTAACTCATCTACTTCTGATTCAAGCGAGCACAAGGGAATTATCATTGCGAAACTACGCAGGGGACAAGAGTTGAAGCTTAAAGCATTAGCTAGGAAAGGAATTGGGAAAGATCATGCGAAATGGTCTCCTGCAGCTACTGTTACGTATATGTATGAGCCTGACATTATTATCAATGAAGAGATGATGAACACTTTGACAGATGAGGAAAAAATTGACTTGATTGAGAGCAGTCCTACCAAAGTGTTTGGCATTGACCCAGTCACCGGACAGGTTGTGGTGGTTGATCCTGAAGCATACACTTACGATGAAGAAGTGATCAAGAAAGCTGAAGCAATGGGGAAACCGGGACTCATTGAGATCCATCCGAAACATGATAGTTTTGTATTCACTGTTGAGTCCACAGGTGCATTGAAGGCTTCTCAGCTGGTACTAAATGCCATTGATATCCTGAAGCAGAAGCTTGATGCAATCCGTCTCTCAGATAACACTGTAGAAGCCGATGATCAGTTTGGTGAACTCGGTGCCCATATGCGTGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005730 GO:0005737 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009888 GO:0010374 GO:0010375 GO:0016591 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0090558 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_A_bac RNA_pol_L

Protein Analysis

319

Amino Acids

35.58

Weight (kDa)

4.77

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_L	PF01193	23 - 66	1.1e-10	RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_pol_A_bac	PF01000	58 - 179	7.9e-19	RNA polymerase Rpb3/RpoA insert domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15400 AT2G15400 AT2G15430 AT2G15430 AT2G15430
fragaria_vesca	FvH4_2g05450
malus_domestica	MD05G1087400.v1.1 MD10G1096200.v1.1
prunus_persica	Prupe.8G132000_v2.0.a1 Prupe.8G132000_v2.0.a1 Prupe.8G132400_v2.0.a1
pyrus_communis	pycom05g08690
rosa_chinensis	RchiOBHm_Chr5g0063881 RchiOBHm_Chr6g0255731
rosa_laevigata	RLG00000014818 RLG00000027736
rosa_multiflora	Rmu_sc0009240.1_g000038 Rmu_ssc0000136.1_g000018
rosa_roxburghii	Rroxscaffold_7G00209720
rosa_rugosa	Rorug05G0560800 Rorug06G0006400
rosa_samantha	Rh1DG021100 Rh2DG345600 Rh2DG346900 Rh5CG269200 Rh6AG078900 Rh6BG072000 Rh6CG070100 Rh6DG067300 Rh7AG302700 Rh7CG321200
rosa_wichuraiana	Rw6G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	938
AccII	CGCG	1 cut(s)	117
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	5 cut(s)	34, 378, 380, 695, 769
AcoI	YGGCCR	1 cut(s)	99
AcuI	CTGAAG	3 cut(s)	726, 765, 887
AfaI	GTAC	1 cut(s)	846
AfiI	CCNNNNNNNGG	2 cut(s)	142, 680
AgsI	TTSAA	4 cut(s)	96, 438, 490, 829
AhlI	ACTAGT	2 cut(s)	362, 413
AluBI	AGCT	8 cut(s)	49, 76, 493, 506, 551, 743, 841, 877
AluI	AGCT	8 cut(s)	49, 76, 493, 506, 551, 743, 841, 877
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	3 cut(s)	221, 546, 896
AlwI	GGATC	5 cut(s)	34, 378, 380, 695, 769
AlwNI	CAGNNNCTG	1 cut(s)	554
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	548
AsuC2I	CCSGG	1 cut(s)	762
AsuHPI	GGTGA	4 cut(s)	4, 46, 670, 941
BaeGI	GKGCMC	1 cut(s)	943
BalI	TGGCCA	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	938
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	1 cut(s)	560
BccI	CCATC	2 cut(s)	159, 786
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BclI	TGATCA	2 cut(s)	732, 919
BcnI	CCSGG	1 cut(s)	762
BcoDI	GTCTC	3 cut(s)	221, 546, 896
BcuI	ACTAGT	2 cut(s)	362, 413
BfaI	CTAG	5 cut(s)	231, 353, 363, 414, 507
BfmI	CTRYAG	3 cut(s)	376, 546, 906
BisI	GCNGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	550
Bme1390I	CCNGG	1 cut(s)	762
BmiI	GGNNCC	1 cut(s)	940
BmrFI	CCNGG	1 cut(s)	762
BmrI	ACTGGG	1 cut(s)	668
BmsI	GCATC	1 cut(s)	871
BmuI	ACTGGG	1 cut(s)	668
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpuMI	CCSGG	1 cut(s)	762
BsaAI	YACGTR	1 cut(s)	561
BsaI	GGTCTC	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	680
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 680
Bse1I	ACTGG	1 cut(s)	674
Bse3DI	GCAATG	4 cut(s)	198, 292, 459, 756
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	2 cut(s)	219, 778
BseLI	CCNNNNNNNGG	2 cut(s)	142, 680
BseMI	GCAATG	4 cut(s)	198, 292, 459, 756
BseMII	CTCAG	2 cut(s)	851, 909
BseNI	ACTGG	1 cut(s)	674
BseSI	GKGCMC	1 cut(s)	943
BseXI	GCAGC	1 cut(s)	560
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	101
BshNI	GGYRCC	1 cut(s)	938
BsiHKAI	GWGCWC	1 cut(s)	447
BsiSI	CCGG	2 cut(s)	681, 761
BslFI	GGGAC	3 cut(s)	119, 492, 777
BslI	CCNNNNNNNGG	2 cut(s)	142, 680
BsmAI	GTCTC	3 cut(s)	221, 546, 896
BsmBI	CGTCTC	1 cut(s)	896
BsmFI	GGGAC	3 cut(s)	119, 492, 777
BsnI	GGCC	1 cut(s)	101
Bso31I	GGTCTC	1 cut(s)	546
Bsp1286I	GDGCHC	2 cut(s)	447, 943
Bsp143I	GATC	9 cut(s)	39, 123, 370, 385, 526, 700, 732, 774, 919
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	2 cut(s)	850, 908
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	940
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	5 cut(s)	34, 378, 380, 695, 769
BspT107I	GGYRCC	1 cut(s)	938
BspTNI	GGTCTC	1 cut(s)	546
BsrDI	GCAATG	4 cut(s)	198, 292, 459, 756
BsrI	ACTGG	1 cut(s)	674
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	9 cut(s)	39, 123, 370, 385, 526, 700, 732, 774, 919
BssT1I	CCWWGG	1 cut(s)	141
Bst4CI	ACNGT	7 cut(s)	8, 34, 380, 394, 556, 808, 907
Bst6I	CTCTTC	1 cut(s)	588
BstBAI	YACGTR	1 cut(s)	561
BstC8I	GCNNGC	4 cut(s)	236, 240, 251, 443
BstDEI	CTNAG	5 cut(s)	212, 323, 330, 837, 895
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	219, 778
BstFNI	CGCG	1 cut(s)	117
BstKTI	GATC	9 cut(s)	42, 126, 373, 388, 529, 703, 735, 777, 922
BstMAI	GTCTC	3 cut(s)	221, 546, 896
BstMBI	GATC	9 cut(s)	39, 123, 370, 385, 526, 700, 732, 774, 919
BstMWI	GCNNNNNNNGC	2 cut(s)	303, 830
BstNSI	RCATGY	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	760
BstSFI	CTRYAG	3 cut(s)	376, 546, 906
BstSLI	GKGCMC	1 cut(s)	943
BstSNI	TACGTA	1 cut(s)	561
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	560
BstX2I	RGATCY	3 cut(s)	39, 370, 774
BstYI	RGATCY	3 cut(s)	39, 370, 774
BsuRI	GGCC	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	219, 778
BtsIMutI	CAGTG	3 cut(s)	385, 804, 903
Cac8I	GCNNGC	4 cut(s)	236, 240, 251, 443
CaiI	CAGNNNCTG	1 cut(s)	554
Csp6I	GTAC	1 cut(s)	845
CviAII	CATG	4 cut(s)	142, 250, 530, 788
CviQI	GTAC	1 cut(s)	845
DdeI	CTNAG	5 cut(s)	212, 323, 330, 837, 895
DpnI	GATC	9 cut(s)	41, 125, 372, 387, 528, 702, 734, 776, 921
DpnII	GATC	9 cut(s)	39, 123, 370, 385, 526, 700, 732, 774, 919
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Eco105I	TACGTA	1 cut(s)	561
Eco130I	CCWWGG	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	546
Eco32I	GATATC	1 cut(s)	862
Eco57I	CTGAAG	3 cut(s)	726, 765, 887
EcoRV	GATATC	1 cut(s)	862
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
Esp3I	CGTCTC	1 cut(s)	896
FaeI	CATG	4 cut(s)	145, 253, 533, 791
FaqI	GGGAC	3 cut(s)	119, 492, 777
FatI	CATG	4 cut(s)	141, 249, 529, 787
FauNDI	CATATG	1 cut(s)	945
FbaI	TGATCA	2 cut(s)	732, 919
Fnu4HI	GCNGC	1 cut(s)	549
FokI	GGATG	2 cut(s)	206, 765
Fsp4HI	GCNGC	1 cut(s)	549
FspBI	CTAG	5 cut(s)	231, 353, 363, 414, 507
GluI	GCNGC	1 cut(s)	549
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	2 cut(s)	681, 761
Hin1II	CATG	4 cut(s)	145, 253, 533, 791
HindIII	AAGCTT	2 cut(s)	491, 875
HinfI	GANTC	4 cut(s)	24, 434, 765, 812
HpaII	CCGG	2 cut(s)	681, 761
HphI	GGTGA	4 cut(s)	4, 46, 670, 941
Hpy166II	GTNNAC	2 cut(s)	816, 932
Hpy188I	TCNGA	4 cut(s)	130, 433, 783, 898
Hpy188III	TCNNGA	5 cut(s)	80, 263, 704, 736, 865
Hpy8I	GTNNAC	2 cut(s)	816, 932
Hpy99I	CGWCG	3 cut(s)	92, 117, 194
HpyAV	CCTTC	2 cut(s)	823, 947
HpyCH4III	ACNGT	7 cut(s)	8, 34, 380, 394, 556, 808, 907
HpyCH4IV	ACGT	2 cut(s)	90, 560
HpyCH4V	TGCA	3 cut(s)	548, 824, 884
HpyF10VI	GCNNNNNNNGC	2 cut(s)	303, 830
HpyF3I	CTNAG	5 cut(s)	212, 323, 330, 837, 895
HpySE526I	ACGT	2 cut(s)	90, 560
Hsp92II	CATG	4 cut(s)	145, 253, 533, 791
Ksp22I	TGATCA	2 cut(s)	732, 919
Kzo9I	GATC	9 cut(s)	39, 123, 370, 385, 526, 700, 732, 774, 919
Lsp1109I	GCAGC	1 cut(s)	560
LweI	GCATC	1 cut(s)	871
MaeI	CTAG	5 cut(s)	231, 353, 363, 414, 507
MaeII	ACGT	2 cut(s)	90, 560
MaeIII	GTNAC	7 cut(s)	10, 337, 358, 394, 416, 556, 676
MalI	GATC	9 cut(s)	41, 125, 372, 387, 528, 702, 734, 776, 921
MboI	GATC	9 cut(s)	39, 123, 370, 385, 526, 700, 732, 774, 919
MboII	GAAGA	4 cut(s)	49, 284, 605, 737
MflI	RGATCY	3 cut(s)	39, 370, 774
MhlI	GDGCHC	2 cut(s)	447, 943
MlsI	TGGCCA	1 cut(s)	101
MluCI	AATT	4 cut(s)	172, 453, 516, 627
MluNI	TGGCCA	1 cut(s)	101
MlyI	GAGTC	2 cut(s)	759, 821
MnlI	CCTC	4 cut(s)	160, 187, 234, 613
Mox20I	TGGCCA	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	101
MseI	TTAA	3 cut(s)	51, 171, 495
MslI	CAYNNNNRTG	1 cut(s)	948
Msp20I	TGGCCA	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	841
MspI	CCGG	2 cut(s)	681, 761
MspR9I	CCNGG	1 cut(s)	762
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	303, 830
NciI	CCSGG	1 cut(s)	762
NcoI	CCATGG	1 cut(s)	141
NdeI	CATATG	1 cut(s)	945
NdeII	GATC	9 cut(s)	39, 123, 370, 385, 526, 700, 732, 774, 919
NlaIII	CATG	4 cut(s)	145, 253, 533, 791
NlaIV	GGNNCC	1 cut(s)	940
NmuCI	GTSAC	2 cut(s)	10, 676
NspI	RCATGY	1 cut(s)	253
PaeI	GCATGC	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 162
PfeI	GAWTC	2 cut(s)	24, 434
PflFI	GACNNNGTC	3 cut(s)	8, 213, 674
PkrI	GCNGC	1 cut(s)	550
PleI	GAGTC	2 cut(s)	759, 820
PpsI	GAGTC	2 cut(s)	759, 820
Ppu21I	YACGTR	1 cut(s)	561
PspN4I	GGNNCC	1 cut(s)	940
PstI	CTGCAG	1 cut(s)	550
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	3 cut(s)	39, 370, 774
PsyI	GACNNNGTC	3 cut(s)	8, 213, 674
PvuII	CAGCTG	1 cut(s)	841
RsaI	GTAC	1 cut(s)	846
RsaNI	GTAC	1 cut(s)	845
RseI	CAYNNNNRTG	1 cut(s)	948
SaqAI	TTAA	3 cut(s)	51, 171, 495
SatI	GCNGC	1 cut(s)	549
Sau3AI	GATC	9 cut(s)	39, 123, 370, 385, 526, 700, 732, 774, 919
SchI	GAGTC	2 cut(s)	759, 821
ScrFI	CCNGG	1 cut(s)	762
SduI	GDGCHC	2 cut(s)	447, 943
SfaNI	GCATC	1 cut(s)	871
SfcI	CTRYAG	3 cut(s)	376, 546, 906
SmiMI	CAYNNNNRTG	1 cut(s)	948
SnaBI	TACGTA	1 cut(s)	561
SpeI	ACTAGT	2 cut(s)	362, 413
SphI	GCATGC	1 cut(s)	253
Sse9I	AATT	4 cut(s)	172, 453, 516, 627
SsiI	CCGC	1 cut(s)	253
SspMI	CTAG	5 cut(s)	231, 353, 363, 414, 507
StyD4I	CCNGG	1 cut(s)	760
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	7 cut(s)	8, 34, 380, 394, 556, 808, 907
TaiI	ACGT	2 cut(s)	93, 563
TaqI	TCGA	2 cut(s)	72, 165
TasI	AATT	4 cut(s)	172, 453, 516, 627
TfiI	GAWTC	2 cut(s)	24, 434
Tru1I	TTAA	3 cut(s)	51, 171, 495
Tru9I	TTAA	3 cut(s)	51, 171, 495
TscAI	CASTG	3 cut(s)	385, 811, 910
TseFI	GTSAC	2 cut(s)	10, 676
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	2 cut(s)	10, 676
TspDTI	ATGAA	5 cut(s)	187, 303, 606, 617, 738
TspGWI	ACGGA	3 cut(s)	32, 101, 878
TspRI	CASTG	3 cut(s)	385, 811, 910
Tth111I	GACNNNGTC	3 cut(s)	8, 213, 674
XceI	RCATGY	1 cut(s)	253
XspI	CTAG	5 cut(s)	231, 353, 363, 414, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.