Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004335

Physical Location & Seq

Genomic Coordinates Forward (+)

69685471 .. 69688960

Gene Structure 3490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33995

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTGTATACACGTGTCAGTTCGTTGTAGAAAGCTTAGGAAGCTCAGCTTGATAAGGAGCTTAGGAGAGGATCCTCTCCCATCGTACCAGAGGTTCCCTCGGGTGAAAATCCCTGAAATCAGGCACGATTACCTCAAGTTCAAGCTCCACGACACCGACGGGAGAGTGGCCAGCGGGCTCCGGCGCGTGATGCTAGCCGAGGTCCCGACCGTCTCCATCGACCTCGTCGAGATTGAAATCAACTCCTCCGTCCTCAAAGACGAGTTCGTCACCCACCGCCTCGGCCTCATCCCCTTTACCAACGATCGCGCCATGAGCTTGCGCTTCTCACGTGACTGCGATGCCTGCGACGGTGATGGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005730 GO:0005737 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009888 GO:0010374 GO:0010375 GO:0016591 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0090558 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_A_bac RNA_pol_L

Protein Analysis

121

Amino Acids

13.88

Weight (kDa)

8.8

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15400 AT2G15400 AT2G15430 AT2G15430 AT2G15430
fragaria_vesca	FvH4_2g05450
malus_domestica	MD05G1087400.v1.1 MD10G1096200.v1.1
prunus_persica	Prupe.8G132000_v2.0.a1 Prupe.8G132000_v2.0.a1 Prupe.8G132400_v2.0.a1
pyrus_communis	pycom05g08690
rosa_chinensis	RchiOBHm_Chr5g0063881 RchiOBHm_Chr6g0255731
rosa_laevigata	RLG00000014818 RLG00000027736
rosa_multiflora	Rmu_sc0009240.1_g000038 Rmu_ssc0000136.1_g000018
rosa_roxburghii	Rroxscaffold_7G00209720
rosa_rugosa	Rorug05G0560800 Rorug06G0006400
rosa_samantha	Rh1DG021100 Rh2DG345600 Rh2DG346900 Rh5CG269200 Rh6AG078900 Rh6BG072000 Rh6CG070100 Rh6DG067300 Rh7AG302700 Rh7CG321200
rosa_wichuraiana	Rw6G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	7
AccII	CGCG	2 cut(s)	186, 309
AciI	CCGC	2 cut(s)	174, 277
AclWI	GGATC	2 cut(s)	65, 78
AcoI	YGGCCR	2 cut(s)	168, 358
AcvI	CACGTG	2 cut(s)	13, 332
AfaI	GTAC	1 cut(s)	86
AflIII	ACRYGT	2 cut(s)	10, 12
AgsI	TTSAA	2 cut(s)	142, 236
AluBI	AGCT	6 cut(s)	34, 43, 48, 60, 145, 318
AluI	AGCT	6 cut(s)	34, 43, 48, 60, 145, 318
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	2 cut(s)	65, 78
Ama87I	CYCGRG	1 cut(s)	99
AoxI	GGCC	3 cut(s)	168, 283, 358
AspLEI	GCGC	3 cut(s)	186, 311, 324
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	3 cut(s)	115, 262, 365
AsuNHI	GCTAGC	1 cut(s)	193
AvaI	CYCGRG	1 cut(s)	99
AvaII	GGWCC	1 cut(s)	202
BalI	TGGCCA	2 cut(s)	170, 360
BamHI	GGATCC	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	180
BbrPI	CACGTG	2 cut(s)	13, 332
BccI	CCATC	3 cut(s)	88, 224, 350
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	1 cut(s)	194
BlpI	GCTNAGC	1 cut(s)	44
Bme18I	GGWCC	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	4 cut(s)	72, 95, 179, 204
BmsI	GCATC	2 cut(s)	180, 331
BmtI	GCTAGC	1 cut(s)	197
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
Bpu10I	CCTNAGC	2 cut(s)	35, 61
Bpu1102I	GCTNAGC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	119
BsaAI	YACGTR	2 cut(s)	13, 332
BsaBI	GATNNNNATC	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	98, 198, 280
Bse1I	ACTGG	1 cut(s)	361
Bse8I	GATNNNNATC	1 cut(s)	236
BseDI	CCNNGG	3 cut(s)	98, 198, 280
BseGI	GGATG	1 cut(s)	288
BseJI	GATNNNNATC	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	361
BseRI	GAGGAG	1 cut(s)	235
Bsh1236I	CGCG	2 cut(s)	186, 309
Bsh1285I	CGRYCG	2 cut(s)	210, 307
BshFI	GGCC	3 cut(s)	170, 285, 360
BsiEI	CGRYCG	2 cut(s)	210, 307
BsiHKCI	CYCGRG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	217
BsmBI	CGTCTC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	188
BsnI	GGCC	3 cut(s)	170, 285, 360
BsoBI	CYCGRG	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	70, 304
Bsp1720I	GCTNAGC	1 cut(s)	44
BspACI	CCGC	2 cut(s)	174, 277
BspANI	GGCC	3 cut(s)	170, 285, 360
BspCNI	CTCAG	1 cut(s)	57
BspFNI	CGCG	2 cut(s)	186, 309
BspLI	GGNNCC	4 cut(s)	72, 95, 179, 204
BspOI	GCTAGC	1 cut(s)	197
BspPI	GGATC	2 cut(s)	65, 78
BsrI	ACTGG	1 cut(s)	361
BssECI	CCNNGG	3 cut(s)	98, 198, 280
BssMI	GATC	2 cut(s)	70, 304
BssNAI	GTATAC	1 cut(s)	8
Bst1107I	GTATAC	1 cut(s)	8
Bst4CI	ACNGT	2 cut(s)	211, 353
BstBAI	YACGTR	2 cut(s)	13, 332
BstC8I	GCNNGC	5 cut(s)	172, 176, 195, 320, 346
BstDEI	CTNAG	3 cut(s)	35, 44, 61
BstF5I	GGATG	1 cut(s)	288
BstFNI	CGCG	2 cut(s)	186, 309
BstHHI	GCGC	3 cut(s)	186, 311, 324
BstKTI	GATC	2 cut(s)	73, 307
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	2 cut(s)	70, 304
BstMCI	CGRYCG	2 cut(s)	210, 307
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 190, 315, 345
BstUI	CGCG	2 cut(s)	186, 309
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BstZ17I	GTATAC	1 cut(s)	8
BsuRI	GGCC	3 cut(s)	170, 285, 360
BtgZI	GCGATG	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	288
Cac8I	GCNNGC	5 cut(s)	172, 176, 195, 320, 346
CfoI	GCGC	3 cut(s)	186, 311, 324
Cfr13I	GGNCC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	1 cut(s)	313
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	3 cut(s)	35, 44, 61
DpnI	GATC	2 cut(s)	72, 306
DpnII	GATC	2 cut(s)	70, 304
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	2 cut(s)	168, 358
Eco24I	GRGCYC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	202
Eco72I	CACGTG	2 cut(s)	13, 332
Eco88I	CYCGRG	1 cut(s)	99
EcoO109I	RGGNCCY	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	217
FaeI	CATG	1 cut(s)	316
FaiI	YATR	2 cut(s)	8, 314
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	1 cut(s)	312
FauI	CCCGC	1 cut(s)	167
FblI	GTMKAC	1 cut(s)	7
FokI	GGATG	1 cut(s)	275
FriOI	GRGCYC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	194
GlaI	GCGC	3 cut(s)	185, 310, 323
HaeIII	GGCC	3 cut(s)	170, 285, 360
HapII	CCGG	1 cut(s)	181
HhaI	GCGC	3 cut(s)	186, 311, 324
Hin1II	CATG	1 cut(s)	316
Hin6I	GCGC	3 cut(s)	184, 309, 322
HinP1I	GCGC	3 cut(s)	184, 309, 322
HindIII	AAGCTT	1 cut(s)	32
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	3 cut(s)	115, 262, 365
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188III	TCNNGA	2 cut(s)	205, 229
Hpy8I	GTNNAC	1 cut(s)	8
Hpy99I	CGWCG	3 cut(s)	161, 230, 353
HpyCH4III	ACNGT	2 cut(s)	211, 353
HpyCH4IV	ACGT	2 cut(s)	12, 331
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 190, 315, 345
HpyF3I	CTNAG	3 cut(s)	35, 44, 61
HpySE526I	ACGT	2 cut(s)	12, 331
Hsp92II	CATG	1 cut(s)	316
HspAI	GCGC	3 cut(s)	184, 309, 322
Kzo9I	GATC	2 cut(s)	70, 304
LmnI	GCTCC	3 cut(s)	57, 150, 183
LpnPI	CCDG	6 cut(s)	101, 106, 126, 184, 194, 358
LweI	GCATC	2 cut(s)	180, 331
MaeI	CTAG	1 cut(s)	194
MaeII	ACGT	2 cut(s)	12, 331
MaeIII	GTNAC	2 cut(s)	268, 332
MalI	GATC	2 cut(s)	72, 306
MboI	GATC	2 cut(s)	70, 304
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	180
MlsI	TGGCCA	2 cut(s)	170, 360
MluNI	TGGCCA	2 cut(s)	170, 360
Mox20I	TGGCCA	2 cut(s)	170, 360
MscI	TGGCCA	2 cut(s)	170, 360
Msp20I	TGGCCA	2 cut(s)	170, 360
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	1 cut(s)	181
MvnI	CGCG	2 cut(s)	186, 309
MwoI	GCNNNNNNNGC	4 cut(s)	40, 190, 315, 345
NdeII	GATC	2 cut(s)	70, 304
NheI	GCTAGC	1 cut(s)	193
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	4 cut(s)	72, 95, 179, 204
NmeAIII	GCCGAG	2 cut(s)	223, 261
NmuCI	GTSAC	2 cut(s)	268, 332
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PflFI	GACNNNGTC	1 cut(s)	224
Ple19I	CGATCG	1 cut(s)	307
PmaCI	CACGTG	2 cut(s)	13, 332
PmlI	CACGTG	2 cut(s)	13, 332
Ppu21I	YACGTR	2 cut(s)	13, 332
PpuMI	RGGWCCY	1 cut(s)	202
Psp5II	RGGWCCY	1 cut(s)	202
PspCI	CACGTG	2 cut(s)	13, 332
PspN4I	GGNNCC	4 cut(s)	72, 95, 179, 204
PspPI	GGNCC	1 cut(s)	202
PspPPI	RGGWCCY	1 cut(s)	202
PsrI	GAACNNNNNNTAC	2 cut(s)	77, 109
PsuI	RGATCY	1 cut(s)	70
PsyI	GACNNNGTC	1 cut(s)	224
PvuI	CGATCG	1 cut(s)	307
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
Sau3AI	GATC	2 cut(s)	70, 304
Sau96I	GGNCC	1 cut(s)	202
SduI	GDGCHC	1 cut(s)	180
SfaNI	GCATC	2 cut(s)	180, 331
SinI	GGWCC	1 cut(s)	202
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SsiI	CCGC	2 cut(s)	174, 277
SspMI	CTAG	1 cut(s)	194
TaaI	ACNGT	2 cut(s)	211, 353
TaiI	ACGT	2 cut(s)	15, 334
TaqI	TCGA	2 cut(s)	219, 228
TseFI	GTSAC	2 cut(s)	268, 332
Tsp45I	GTSAC	2 cut(s)	268, 332
TspGWI	ACGGA	1 cut(s)	238
Tth111I	GACNNNGTC	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	7
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.