Prupe.8G132000_v2.0.a1

DNA-directed RNA polymerases II, IV and V subunit 3-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
15438272 .. 15441084
2813 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G132000.2

Sequence Viewer

Length: 957 bp
ATGGAAGGCAAATCGTACCAGAGGCTACCGCGGGTCAAAATCCGTGAAATGCGTGACGACTACATGAAGTTCGAGCTCCGCGACACCGACGCCAGCGTCGCTAACGCGCTCCGGCGAGTGATGATCGCCGAGGTACCCACCGTCGCCATCGACCTCGTCGAGATCGAGATCAACTCGTCCGTGCTTAACGACGAGTTCATAGCCCACAGGCTCGGACTCATCCCATTGACCTCCGACCGAGCCATGAGCATGCGCTTCTCACGTGACTGCGACGCCTGCGACGGCGACGGCCAGTGCGAGTTCTGCTCCGTCGAGTTTCATCTTCGCGCCAAGTGCCATTCCGACCAAACCCTAGACGTCACCAGCAAGGACCTTCTCAGCTCTGACCACACCGTCGTCCCCGTCGATTTCTCCGATTCCGCCGGCATGGAATCCTCTGAACAAAAAGGGATTATCATTGTGAAGTTGCGAAGGGGGCAAGAGCTGAGGCTAAGGGCCATTGCCAGAAAGGGGATTGGCAAAGATCATGCCAAGTGGTCACCTGCAGCCACTGTCACTTTCATGTACGAACCTGATATTCGAATCAATGAGGAGTTGATGGATATGTTGACTCTTGATGAGAAGAAGGCTTGGGTTGAAAGTAGTCCTACCAAAGTCTTTGACTTTGATCCTAAAACCGAGAAGGTCATGGTGGTTGATCCTGAAGCATACACCTATGATGATGAAGTGATCAAGAAAGCAGAAGCTATGGGGAAGCCTGGGCTTGTGGATATCATTGCAAAAGAAGATAGTTTTATTTTCACAGTGGAATCTACTGGTGCTGTCAAAGCTTCTCAGTTGTTACTCAATGCCATTGAAATCCTGAAACAGAAACTGGATGCAGTGCGCCTTTCTGAGGATACTGTAGAAGCTGATGATCAGTTTGGTGAATTAGGTGCTCATATGCGAGGAGGATGA

Protein Analysis

319

Amino Acids

35.66

Weight (kDa)

4.88

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 550
AasI GACNNNNNNGTC 2 cut(s) 95, 392
AatII GACGTC 1 cut(s) 360
Acc36I ACCTGC 1 cut(s) 550
Acc65I GGTACC 1 cut(s) 133
AccB1I GGYRCC 1 cut(s) 133
AccII CGCG 4 cut(s) 31, 81, 107, 327
AciI CCGC 4 cut(s) 29, 31, 79, 420
AclWI GGATC 2 cut(s) 662, 692
AcoI YGGCCR 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 723
AcvI CACGTG 1 cut(s) 263
AcyI GRCGYC 3 cut(s) 90, 273, 357
AfaI GTAC 3 cut(s) 17, 135, 566
AfiI CCNNNNNNNGG 2 cut(s) 510, 895
AgsI TTSAA 2 cut(s) 638, 857
AjnI CCWGG 1 cut(s) 757
AluBI AGCT 6 cut(s) 76, 381, 484, 746, 830, 911
AluI AGCT 6 cut(s) 76, 381, 484, 746, 830, 911
Alw21I GWGCWC 2 cut(s) 78, 940
AlwI GGATC 2 cut(s) 662, 692
AlwNI CAGNNNCTG 2 cut(s) 551, 874
AoxI GGCC 2 cut(s) 289, 495
ApeKI GCWGC 1 cut(s) 545
Asp718I GGTACC 1 cut(s) 133
AspLEI GCGC 4 cut(s) 109, 255, 329, 888
AspS9I GGNCC 2 cut(s) 370, 495
AsuHPI GGTGA 3 cut(s) 352, 531, 938
AsuII TTCGAA 1 cut(s) 580
AvaII GGWCC 1 cut(s) 370
BanI GGYRCC 1 cut(s) 133
BanII GRGCYC 1 cut(s) 78
BbrPI CACGTG 1 cut(s) 263
Bbv12I GWGCWC 2 cut(s) 78, 940
BbvCI CCTCAGC 1 cut(s) 485
BbvI GCAGC 1 cut(s) 557
BccI CCATC 2 cut(s) 155, 592
BceAI ACGGC 2 cut(s) 298, 304
BciT130I CCWGG 1 cut(s) 759
BciVI GTATCC 1 cut(s) 892
BclI TGATCA 2 cut(s) 729, 916
BfaI CTAG 1 cut(s) 353
BfmI CTRYAG 2 cut(s) 543, 903
BfuAI ACCTGC 1 cut(s) 550
BfuI GTATCC 1 cut(s) 892
BisI GCNGC 1 cut(s) 546
BlsI GCNGC 1 cut(s) 547
Bme1390I CCNGG 1 cut(s) 759
Bme18I GGWCC 1 cut(s) 370
BmgT120I GGNCC 2 cut(s) 370, 495
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 759
BmsI GCATC 1 cut(s) 868
BplI GAGNNNNNCTC 4 cut(s) 158, 190, 290, 322
Bpu10I CCTNAGC 2 cut(s) 485, 491
Bpu14I TTCGAA 1 cut(s) 580
BsaAI YACGTR 1 cut(s) 263
BsaBI GATNNNNATC 1 cut(s) 167
BsaHI GRCGYC 3 cut(s) 90, 273, 357
BsaJI CCNNGG 3 cut(s) 29, 129, 758
Bsc4I CCNNNNNNNGG 2 cut(s) 510, 895
Bse118I RCCGGY 1 cut(s) 422
Bse1I ACTGG 3 cut(s) 292, 820, 879
Bse3DI GCAATG 2 cut(s) 498, 774
Bse8I GATNNNNATC 1 cut(s) 167
BseBI CCWGG 1 cut(s) 759
BseDI CCNNGG 3 cut(s) 29, 129, 758
BseGI GGATG 2 cut(s) 219, 883
BseJI GATNNNNATC 1 cut(s) 167
BseLI CCNNNNNNNGG 2 cut(s) 510, 895
BseMI GCAATG 2 cut(s) 498, 774
BseMII CTCAG 4 cut(s) 391, 476, 848, 885
BseNI ACTGG 3 cut(s) 292, 820, 879
BseRI GAGGAG 1 cut(s) 605
BseXI GCAGC 1 cut(s) 557
Bsh1236I CGCG 4 cut(s) 31, 81, 107, 327
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 2 cut(s) 291, 497
BshNI GGYRCC 1 cut(s) 133
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 2 cut(s) 78, 940
BsiSI CCGG 2 cut(s) 112, 423
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 2 cut(s) 510, 895
BsmFI GGGAC 1 cut(s) 383
BsnI GGCC 2 cut(s) 291, 497
Bsp119I TTCGAA 1 cut(s) 580
Bsp1286I GDGCHC 2 cut(s) 78, 940
Bsp143I GATC 8 cut(s) 123, 162, 168, 523, 667, 697, 729, 916
BspACI CCGC 4 cut(s) 29, 31, 79, 420
BspANI GGCC 2 cut(s) 291, 497
BspCNI CTCAG 4 cut(s) 390, 477, 847, 886
BspFNI CGCG 4 cut(s) 31, 81, 107, 327
BspLI GGNNCC 1 cut(s) 135
BspMAI CTGCAG 1 cut(s) 547
BspMI ACCTGC 1 cut(s) 550
BspPI GGATC 2 cut(s) 662, 692
BspT104I TTCGAA 1 cut(s) 580
BspT107I GGYRCC 1 cut(s) 133
BsrDI GCAATG 2 cut(s) 498, 774
BsrFI RCCGGY 1 cut(s) 422
BsrI ACTGG 3 cut(s) 292, 820, 879
BssAI RCCGGY 1 cut(s) 422
BssECI CCNNGG 3 cut(s) 29, 129, 758
BssMI GATC 8 cut(s) 123, 162, 168, 523, 667, 697, 729, 916
BssNI GRCGYC 3 cut(s) 90, 273, 357
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 5 cut(s) 142, 394, 553, 805, 904
BstACI GRCGYC 3 cut(s) 90, 273, 357
BstBAI YACGTR 1 cut(s) 263
BstBI TTCGAA 1 cut(s) 580
BstC8I GCNNGC 4 cut(s) 94, 251, 277, 424
BstDEI CTNAG 5 cut(s) 377, 485, 491, 834, 894
BstDSI CCRYGG 1 cut(s) 29
BstEII GGTNACC 1 cut(s) 537
BstENI CCTNNNNNAGG 1 cut(s) 893
BstF5I GGATG 2 cut(s) 219, 883
BstFNI CGCG 4 cut(s) 31, 81, 107, 327
BstHHI GCGC 4 cut(s) 109, 255, 329, 888
BstKTI GATC 8 cut(s) 126, 165, 171, 526, 670, 700, 732, 919
BstMBI GATC 8 cut(s) 123, 162, 168, 523, 667, 697, 729, 916
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 6 cut(s) 98, 276, 303, 333, 475, 827
BstNI CCWGG 1 cut(s) 759
BstNSI RCATGY 1 cut(s) 253
BstPI GGTNACC 1 cut(s) 537
BstSCI CCNGG 1 cut(s) 757
BstSFI CTRYAG 2 cut(s) 543, 903
BstUI CGCG 4 cut(s) 31, 81, 107, 327
BstV1I GCAGC 1 cut(s) 557
BsuI GTATCC 1 cut(s) 892
BsuRI GGCC 2 cut(s) 291, 497
BtgI CCRYGG 1 cut(s) 29
BtsCI GGATG 2 cut(s) 219, 883
BtsI GCAGTG 1 cut(s) 888
BtsIMutI CAGTG 4 cut(s) 299, 549, 810, 888
BveI ACCTGC 1 cut(s) 550
Cac8I GCNNGC 4 cut(s) 94, 251, 277, 424
CaiI CAGNNNCTG 2 cut(s) 551, 874
CfoI GCGC 4 cut(s) 109, 255, 329, 888
Cfr10I RCCGGY 1 cut(s) 422
Cfr13I GGNCC 2 cut(s) 370, 495
Cfr42I CCGCGG 1 cut(s) 32
CseI GACGC 3 cut(s) 85, 98, 281
Csp6I GTAC 3 cut(s) 16, 134, 565
CviAII CATG 7 cut(s) 64, 244, 250, 427, 527, 562, 688
CviQI GTAC 3 cut(s) 16, 134, 565
DdeI CTNAG 5 cut(s) 377, 485, 491, 834, 894
DpnI GATC 8 cut(s) 125, 164, 170, 525, 669, 699, 731, 918
DpnII GATC 8 cut(s) 123, 162, 168, 523, 667, 697, 729, 916
DrdI GACNNNNNNGTC 2 cut(s) 95, 392
DseDI GACNNNNNNGTC 2 cut(s) 95, 392
EaeI YGGCCR 1 cut(s) 289
EciI GGCGGA 1 cut(s) 409
Ecl136II GAGCTC 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 78
Eco32I GATATC 1 cut(s) 772
Eco47I GGWCC 1 cut(s) 370
Eco53kI GAGCTC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 723
Eco72I CACGTG 1 cut(s) 263
Eco91I GGTNACC 1 cut(s) 537
EcoICRI GAGCTC 1 cut(s) 76
EcoNI CCTNNNNNAGG 1 cut(s) 893
EcoO109I RGGNCCY 1 cut(s) 370
EcoO65I GGTNACC 1 cut(s) 537
EcoRII CCWGG 1 cut(s) 757
EcoRV GATATC 1 cut(s) 772
EcoT38I GRGCYC 1 cut(s) 78
FaeI CATG 7 cut(s) 67, 247, 253, 430, 530, 565, 691
FaqI GGGAC 1 cut(s) 383
FatI CATG 7 cut(s) 63, 243, 249, 426, 526, 561, 687
FauI CCCGC 1 cut(s) 24
FauNDI CATATG 1 cut(s) 942
FbaI TGATCA 2 cut(s) 729, 916
Fnu4HI GCNGC 1 cut(s) 546
FokI GGATG 2 cut(s) 206, 890
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 546
FspBI CTAG 1 cut(s) 353
GlaI GCGC 4 cut(s) 108, 254, 328, 887
GluI GCNGC 1 cut(s) 546
HaeIII GGCC 2 cut(s) 291, 497
HapII CCGG 2 cut(s) 112, 423
HgaI GACGC 3 cut(s) 85, 98, 281
HhaI GCGC 4 cut(s) 109, 255, 329, 888
Hin1I GRCGYC 3 cut(s) 90, 273, 357
Hin1II CATG 7 cut(s) 67, 247, 253, 430, 530, 565, 691
Hin6I GCGC 4 cut(s) 107, 253, 327, 886
HinP1I GCGC 4 cut(s) 107, 253, 327, 886
HincII GTYRAC 1 cut(s) 609
HindII GTYRAC 1 cut(s) 609
HindIII AAGCTT 1 cut(s) 828
HinfI GANTC 6 cut(s) 216, 416, 431, 582, 610, 809
HpaII CCGG 2 cut(s) 112, 423
HphI GGTGA 3 cut(s) 352, 531, 938
Hpy166II GTNNAC 1 cut(s) 609
Hpy188I TCNGA 7 cut(s) 215, 235, 343, 385, 415, 439, 895
Hpy188III TCNNGA 6 cut(s) 160, 166, 614, 701, 733, 862
Hpy8I GTNNAC 1 cut(s) 609
HpyAV CCTTC 4 cut(s) 383, 465, 619, 676
HpyCH4III ACNGT 5 cut(s) 142, 394, 553, 805, 904
HpyCH4IV ACGT 2 cut(s) 262, 357
HpyCH4V TGCA 3 cut(s) 545, 779, 881
HpyF10VI GCNNNNNNNGC 6 cut(s) 98, 276, 303, 333, 475, 827
HpyF3I CTNAG 5 cut(s) 377, 485, 491, 834, 894
HpySE526I ACGT 2 cut(s) 262, 357
Hsp92I GRCGYC 3 cut(s) 90, 273, 357
Hsp92II CATG 7 cut(s) 67, 247, 253, 430, 530, 565, 691
HspAI GCGC 4 cut(s) 107, 253, 327, 886
KpnI GGTACC 1 cut(s) 137
KroI GCCGGC 1 cut(s) 422
KroNI GCCGGC 1 cut(s) 424
Ksp22I TGATCA 2 cut(s) 729, 916
KspI CCGCGG 1 cut(s) 32
Kzo9I GATC 8 cut(s) 123, 162, 168, 523, 667, 697, 729, 916
LmnI GCTCC 3 cut(s) 81, 114, 311
Lsp1109I GCAGC 1 cut(s) 557
LweI GCATC 1 cut(s) 868
MaeI CTAG 1 cut(s) 353
MaeII ACGT 2 cut(s) 262, 357
MaeIII GTNAC 6 cut(s) 53, 263, 358, 537, 553, 840
MalI GATC 8 cut(s) 125, 164, 170, 525, 669, 699, 731, 918
MboI GATC 8 cut(s) 123, 162, 168, 523, 667, 697, 729, 916
MboII GAAGA 3 cut(s) 314, 634, 797
MhlI GDGCHC 2 cut(s) 78, 940
MluCI AATT 1 cut(s) 929
MlyI GAGTC 2 cut(s) 210, 604
MmeI TCCRAC 2 cut(s) 258, 366
MroNI GCCGGC 1 cut(s) 422
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 2 cut(s) 248, 560
MspA1I CMGCKG 1 cut(s) 31
MspI CCGG 2 cut(s) 112, 423
MspR9I CCNGG 1 cut(s) 759
MvaI CCWGG 1 cut(s) 759
MvnI CGCG 4 cut(s) 31, 81, 107, 327
MwoI GCNNNNNNNGC 6 cut(s) 98, 276, 303, 333, 475, 827
NaeI GCCGGC 1 cut(s) 424
NdeI CATATG 1 cut(s) 942
NdeII GATC 8 cut(s) 123, 162, 168, 523, 667, 697, 729, 916
NgoMIV GCCGGC 1 cut(s) 422
NlaIII CATG 7 cut(s) 67, 247, 253, 430, 530, 565, 691
NlaIV GGNNCC 1 cut(s) 135
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 5 cut(s) 53, 263, 358, 537, 553
NspI RCATGY 1 cut(s) 253
NspV TTCGAA 1 cut(s) 580
PaeI GCATGC 1 cut(s) 253
PaqCI CACCTGC 1 cut(s) 550
PcsI WCGNNNNNNNCGW 6 cut(s) 78, 156, 162, 294, 402, 411
PdiI GCCGGC 1 cut(s) 424
PfeI GAWTC 4 cut(s) 416, 431, 582, 809
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 1 cut(s) 547
PleI GAGTC 2 cut(s) 210, 604
PmaCI CACGTG 1 cut(s) 263
PmlI CACGTG 1 cut(s) 263
PpsI GAGTC 2 cut(s) 210, 604
Ppu21I YACGTR 1 cut(s) 263
PpuMI RGGWCCY 1 cut(s) 370
Psp124BI GAGCTC 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 370
Psp6I CCWGG 1 cut(s) 757
PspCI CACGTG 1 cut(s) 263
PspEI GGTNACC 1 cut(s) 537
PspGI CCWGG 1 cut(s) 757
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 2 cut(s) 370, 495
PspPPI RGGWCCY 1 cut(s) 370
PstI CTGCAG 1 cut(s) 547
PstNI CAGNNNCTG 2 cut(s) 551, 874
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 3 cut(s) 17, 135, 566
RsaNI GTAC 3 cut(s) 16, 134, 565
RseI CAYNNNNRTG 2 cut(s) 248, 560
SacI GAGCTC 1 cut(s) 78
SacII CCGCGG 1 cut(s) 32
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 546
Sau3AI GATC 8 cut(s) 123, 162, 168, 523, 667, 697, 729, 916
Sau96I GGNCC 2 cut(s) 370, 495
SchI GAGTC 2 cut(s) 210, 604
ScrFI CCNGG 1 cut(s) 759
SduI GDGCHC 2 cut(s) 78, 940
SfaNI GCATC 1 cut(s) 868
SfcI CTRYAG 2 cut(s) 543, 903
Sfr303I CCGCGG 1 cut(s) 32
SfuI TTCGAA 1 cut(s) 580
SgrBI CCGCGG 1 cut(s) 32
SinI GGWCC 1 cut(s) 370
SmiMI CAYNNNNRTG 2 cut(s) 248, 560
SphI GCATGC 1 cut(s) 253
Sse9I AATT 1 cut(s) 929
SsiI CCGC 4 cut(s) 29, 31, 79, 420
SspMI CTAG 1 cut(s) 353
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 757
TaaI ACNGT 5 cut(s) 142, 394, 553, 805, 904
TaiI ACGT 2 cut(s) 265, 360
TaqI TCGA 7 cut(s) 72, 150, 159, 165, 312, 405, 580
TaqII GACCGA 1 cut(s) 252
TasI AATT 1 cut(s) 929
TfiI GAWTC 4 cut(s) 416, 431, 582, 809
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 4 cut(s) 299, 556, 810, 888
TseFI GTSAC 5 cut(s) 53, 263, 358, 537, 553
TseI GCWGC 1 cut(s) 545
Tsp45I GTSAC 5 cut(s) 53, 263, 358, 537, 553
TspDTI ATGAA 5 cut(s) 80, 187, 308, 550, 738
TspGWI ACGGA 3 cut(s) 32, 169, 298
TspRI CASTG 4 cut(s) 299, 556, 810, 888
Tth111I GACNNNGTC 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 370
XagI CCTNNNNNAGG 1 cut(s) 893
XceI RCATGY 1 cut(s) 253
XspI CTAG 1 cut(s) 353
ZraI GACGTC 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.