Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004335

Physical Location & Seq

Genomic Coordinates Reverse (-)

3273619 .. 3273888

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG021100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGAGGGGAAATCGTACCAGAGGTTCCCTCGGGTGAAAATCCCTGAAATCAGGCACGATTACCTCAAGTTCAAGCTCCACGACACCAACGGGAGAGTGGCCAACGGGCTCCGGCGCGTGATGCTGGCCGAGGTCCCGACCGTCTCCATCGACGTCCTCAAAGACGAGTTCGTCGCCCACCGCCTCGGCCTCATCCCCTTTACCAACGATCGCGCCATGAGCTTGCGCTTCTCACGTGACTGCGATGCCTGCGACGGTGATGGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005730 GO:0005737 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009888 GO:0010374 GO:0010375 GO:0016591 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0090558 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_A_bac RNA_pol_L

Protein Analysis

89

Amino Acids

10.23

Weight (kDa)

8.71

Isoelectric Point (pI)

31.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15400 AT2G15400 AT2G15430 AT2G15430 AT2G15430
fragaria_vesca	FvH4_2g05450
malus_domestica	MD05G1087400.v1.1 MD10G1096200.v1.1
prunus_persica	Prupe.8G132000_v2.0.a1 Prupe.8G132000_v2.0.a1 Prupe.8G132400_v2.0.a1
pyrus_communis	pycom05g08690
rosa_chinensis	RchiOBHm_Chr5g0063881 RchiOBHm_Chr6g0255731
rosa_laevigata	RLG00000014818 RLG00000027736
rosa_multiflora	Rmu_sc0009240.1_g000038 Rmu_ssc0000136.1_g000018
rosa_roxburghii	Rroxscaffold_7G00209720
rosa_rugosa	Rorug05G0560800 Rorug06G0006400
rosa_samantha	Rh1DG021100 Rh2DG345600 Rh2DG346900 Rh5CG269200 Rh6AG078900 Rh6BG072000 Rh6CG070100 Rh6DG067300 Rh7AG302700 Rh7CG321200
rosa_wichuraiana	Rw6G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AatII	GACGTC	1 cut(s)	156
AccII	CGCG	2 cut(s)	117, 213
AciI	CCGC	1 cut(s)	181
AcoI	YGGCCR	3 cut(s)	99, 126, 262
AcvI	CACGTG	1 cut(s)	236
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	1 cut(s)	17
AgsI	TTSAA	1 cut(s)	73
AluBI	AGCT	2 cut(s)	76, 222
AluI	AGCT	2 cut(s)	76, 222
Alw26I	GTCTC	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	30
AoxI	GGCC	4 cut(s)	99, 126, 187, 262
AspLEI	GCGC	3 cut(s)	117, 215, 228
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	2 cut(s)	46, 269
AvaI	CYCGRG	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	133
BalI	TGGCCA	2 cut(s)	101, 264
BanII	GRGCYC	1 cut(s)	111
BbrPI	CACGTG	1 cut(s)	236
BccI	CCATC	2 cut(s)	155, 254
BcoDI	GTCTC	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	133
BmeT110I	CYCGRG	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	3 cut(s)	26, 110, 135
BmsI	GCATC	2 cut(s)	111, 235
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
BpuEI	CTTGAG	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	3 cut(s)	29, 129, 184
Bse1I	ACTGG	1 cut(s)	265
BseDI	CCNNGG	3 cut(s)	29, 129, 184
BseGI	GGATG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	265
Bsh1236I	CGCG	2 cut(s)	117, 213
Bsh1285I	CGRYCG	2 cut(s)	141, 211
BshFI	GGCC	4 cut(s)	101, 128, 189, 264
BsiEI	CGRYCG	2 cut(s)	141, 211
BsiHKCI	CYCGRG	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	148
BsmBI	CGTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	4 cut(s)	101, 128, 189, 264
BsoBI	CYCGRG	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	4 cut(s)	101, 128, 189, 264
BspFNI	CGCG	2 cut(s)	117, 213
BspLI	GGNNCC	3 cut(s)	26, 110, 135
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	3 cut(s)	29, 129, 184
BssMI	GATC	1 cut(s)	208
BssNI	GRCGYC	1 cut(s)	153
Bst4CI	ACNGT	2 cut(s)	142, 257
BstACI	GRCGYC	1 cut(s)	153
BstBAI	YACGTR	1 cut(s)	236
BstC8I	GCNNGC	3 cut(s)	126, 224, 250
BstF5I	GGATG	1 cut(s)	192
BstFNI	CGCG	2 cut(s)	117, 213
BstHHI	GCGC	3 cut(s)	117, 215, 228
BstKTI	GATC	1 cut(s)	211
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	208
BstMCI	CGRYCG	2 cut(s)	141, 211
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 219, 249
BstUI	CGCG	2 cut(s)	117, 213
BsuRI	GGCC	4 cut(s)	101, 128, 189, 264
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	192
Cac8I	GCNNGC	3 cut(s)	126, 224, 250
CfoI	GCGC	3 cut(s)	117, 215, 228
Cfr13I	GGNCC	1 cut(s)	133
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	7 cut(s)	76, 101, 109, 128, 189, 222, 264
CviKI_1	RGCY	7 cut(s)	76, 101, 109, 128, 189, 222, 264
CviQI	GTAC	1 cut(s)	16
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	3 cut(s)	99, 126, 262
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	133
Eco72I	CACGTG	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	30
EcoO109I	RGGNCCY	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	1 cut(s)	220
FaiI	YATR	1 cut(s)	218
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	1 cut(s)	216
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	111
GlaI	GCGC	3 cut(s)	116, 214, 227
HaeIII	GGCC	4 cut(s)	101, 128, 189, 264
HapII	CCGG	1 cut(s)	112
HhaI	GCGC	3 cut(s)	117, 215, 228
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	3 cut(s)	115, 213, 226
HinP1I	GCGC	3 cut(s)	115, 213, 226
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	2 cut(s)	46, 269
Hpy188III	TCNNGA	1 cut(s)	136
Hpy99I	CGWCG	3 cut(s)	155, 176, 257
HpyCH4III	ACNGT	2 cut(s)	142, 257
HpyCH4IV	ACGT	2 cut(s)	153, 235
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 219, 249
HpySE526I	ACGT	2 cut(s)	153, 235
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	3 cut(s)	115, 213, 226
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	81, 114
LpnPI	CCDG	6 cut(s)	32, 37, 57, 110, 125, 262
LweI	GCATC	2 cut(s)	111, 235
MaeII	ACGT	2 cut(s)	153, 235
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	111
MlsI	TGGCCA	2 cut(s)	101, 264
MluNI	TGGCCA	2 cut(s)	101, 264
MnlI	CCTC	7 cut(s)	15, 39, 74, 124, 167, 194, 200
Mox20I	TGGCCA	2 cut(s)	101, 264
MscI	TGGCCA	2 cut(s)	101, 264
Msp20I	TGGCCA	2 cut(s)	101, 264
MspI	CCGG	1 cut(s)	112
MvnI	CGCG	2 cut(s)	117, 213
MwoI	GCNNNNNNNGC	3 cut(s)	121, 219, 249
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	3 cut(s)	26, 110, 135
NmeAIII	GCCGAG	2 cut(s)	154, 165
NmuCI	GTSAC	1 cut(s)	236
Ple19I	CGATCG	1 cut(s)	211
PmaCI	CACGTG	1 cut(s)	236
PmlI	CACGTG	1 cut(s)	236
Ppu21I	YACGTR	1 cut(s)	236
PpuMI	RGGWCCY	1 cut(s)	133
Psp5II	RGGWCCY	1 cut(s)	133
PspCI	CACGTG	1 cut(s)	236
PspN4I	GGNNCC	3 cut(s)	26, 110, 135
PspPI	GGNCC	1 cut(s)	133
PspPPI	RGGWCCY	1 cut(s)	133
PsrI	GAACNNNNNNTAC	2 cut(s)	8, 40
PvuI	CGATCG	1 cut(s)	211
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	7 cut(s)	26, 66, 78, 135, 156, 224, 238
SfaNI	GCATC	2 cut(s)	111, 235
SinI	GGWCC	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SsiI	CCGC	1 cut(s)	181
TaaI	ACNGT	2 cut(s)	142, 257
TaiI	ACGT	2 cut(s)	156, 238
TaqI	TCGA	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
ZraI	GACGTC	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.