pycom05g08690

DNA-directed RNA polymerases II, IV and V subunit 3-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
11416411 .. 11420026
3616 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g08690.2

Sequence Viewer

Length: 1071 bp
ATGAGATTTTTGGAGTATCCACATATAAATTGCCAAAACCCTCTACGCTCATTCCGTCTTCTCCACCAAAACCCCTCTCTCTTCTCTCTCCCTCGGACGGTCAGACGAGTGAGAATGGAAGGCAAATCGTACCAGAGGCTCCCGCGCGTCAAAATCCGGGACATGCGTGACGACTACTTGAAGTTTGAGCTCCGCGACACTGACGCCAGCGTCGCCAACGCGCTCCGGCGAGTCATGATTGCCGAGGTCCCCACCGTCGCCATCGACCTCGTCGAGATCGAGATTAACTCCTCCGTCCTCAACGACGAGTTCATCGCCCACCGACTTGGCCTCATCCCCCTCACCTCCGACCGCGCCATGAGCATGCGCTTCTCACGTGACTGCGACGCCTGCGACGGCGACGGCCAGTGCGAGTTCTGCTCCGTCGAGTTCCATCTCCGCGCCAAGTGCCACTTCGATCAAACCCTAGATGTCACCAGCAAGGACCTCCTCAGCTCCGACCACACCGTCGTCCCCGTTGATTTCTCTGATTCCTCCGGCTTGGAATCGTCCGAACAAAAGGGAATTATCATTGTGAAGTTGCGAAGGGGGCAGGAACTGAGGCTGAGGGCCATTGCCAGAAAGGGGATTGGCAAAGATCATGCTAAGTGGTCACCGGCGGCCACTGTCACTTTCATGTATGAACCCGACATTCGAATCAATGAGGAGCTGATGGATACTTTGACTCTTGAGGAGAAGAAGGCTTGGGTTGATAGTAGTCCTACCAAAGTCTTTGACATTGATCCTAAAACTGACAAGGTCATGGTTGTTGATCCTGAAGCATACACCTATGACGATGAAGTGATCAAGAAAGCAGAAGCTATGGGGAAGTCTGGGCTTGTGGATATCAGTGCAAGGGAAGATAGCTTTATATTCACAGTGGAATCTACCGGTGCGATTAAAGCTGCACAGCTACTCCTCAATGCCATAGAAGTCCTGAAACAGAAGCTGGACGCAGTGCGCCTTTCTGAGGATACTGTAGAAGCCGATGACCAGTTTGGGGAATTAGGTGCACATATGCGAGGAGGATGA

Protein Analysis

357

Amino Acids

40.26

Weight (kDa)

5.35

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 209, 506
AccII CGCG 6 cut(s) 145, 147, 195, 221, 354, 441
AciI CCGC 5 cut(s) 143, 193, 352, 439, 659
AclWI GGATC 2 cut(s) 776, 806
AcoI YGGCCR 2 cut(s) 403, 660
AcuI CTGAAG 1 cut(s) 837
AcvI CACGTG 1 cut(s) 377
AcyI GRCGYC 2 cut(s) 204, 387
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 4 cut(s) 97, 624, 1009, 1039
AgeI ACCGGT 1 cut(s) 929
AgsI TTSAA 1 cut(s) 181
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AluBI AGCT 8 cut(s) 190, 495, 709, 860, 906, 944, 952, 988
AluI AGCT 8 cut(s) 190, 495, 709, 860, 906, 944, 952, 988
Alw21I GWGCWC 2 cut(s) 192, 1054
Alw44I GTGCAC 1 cut(s) 1050
AlwI GGATC 2 cut(s) 776, 806
AlwNI CAGNNNCTG 2 cut(s) 598, 988
AoxI GGCC 4 cut(s) 328, 403, 609, 660
ApaLI GTGCAC 1 cut(s) 1050
ApeKI GCWGC 1 cut(s) 944
AsiGI ACCGGT 1 cut(s) 929
AspLEI GCGC 6 cut(s) 147, 223, 356, 369, 443, 1002
AspS9I GGNCC 3 cut(s) 247, 484, 609
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 3 cut(s) 334, 466, 645
AsuII TTCGAA 1 cut(s) 694
AvaII GGWCC 2 cut(s) 247, 484
BaeGI GKGCMC 1 cut(s) 1054
BanII GRGCYC 1 cut(s) 192
BbrPI CACGTG 1 cut(s) 377
BbsI GAAGAC 1 cut(s) 50
Bbv12I GWGCWC 2 cut(s) 192, 1054
BbvCI CCTCAGC 2 cut(s) 491, 605
BbvI GCAGC 1 cut(s) 931
BccI CCATC 3 cut(s) 269, 441, 706
BceAI ACGGC 2 cut(s) 412, 418
BciVI GTATCC 3 cut(s) 27, 709, 1006
BclI TGATCA 1 cut(s) 843
BcnI CCSGG 1 cut(s) 158
BfaI CTAG 1 cut(s) 467
BfmI CTRYAG 1 cut(s) 1017
BfuI GTATCC 3 cut(s) 27, 709, 1006
BisI GCNGC 2 cut(s) 660, 945
BlsI GCNGC 2 cut(s) 661, 946
Bme1390I CCNGG 1 cut(s) 158
Bme18I GGWCC 2 cut(s) 247, 484
BmgT120I GGNCC 3 cut(s) 247, 484, 609
BmiI GGNNCC 2 cut(s) 140, 249
BmrFI CCNGG 1 cut(s) 158
BpiI GAAGAC 1 cut(s) 50
BplI GAGNNNNNCTC 4 cut(s) 272, 304, 404, 436
Bpu10I CCTNAGC 2 cut(s) 491, 605
Bpu14I TTCGAA 1 cut(s) 694
BpuEI CTTGAG 1 cut(s) 749
BpuMI CCSGG 1 cut(s) 158
BsaAI YACGTR 1 cut(s) 377
BsaHI GRCGYC 2 cut(s) 204, 387
BsaJI CCNNGG 2 cut(s) 92, 243
BsaWI WCCGGW 1 cut(s) 929
BsaXI ACNNNNNCTCC 2 cut(s) 939, 969
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 624, 1009, 1039
Bse118I RCCGGY 2 cut(s) 655, 929
Bse1I ACTGG 2 cut(s) 406, 1033
Bse3DI GCAATG 1 cut(s) 612
BseDI CCNNGG 2 cut(s) 92, 243
BseGI GGATG 1 cut(s) 333
BseLI CCNNNNNNNGG 4 cut(s) 97, 624, 1009, 1039
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 4 cut(s) 505, 590, 596, 999
BseNI ACTGG 2 cut(s) 406, 1033
BseRI GAGGAG 5 cut(s) 280, 479, 719, 746, 947
BseSI GKGCMC 1 cut(s) 1054
BseXI GCAGC 1 cut(s) 931
BsgI GTGCAG 1 cut(s) 930
Bsh1236I CGCG 6 cut(s) 145, 147, 195, 221, 354, 441
Bsh1285I CGRYCG 1 cut(s) 352
BshFI GGCC 4 cut(s) 330, 405, 611, 662
BshTI ACCGGT 1 cut(s) 929
BsiEI CGRYCG 1 cut(s) 352
BsiHKAI GWGCWC 2 cut(s) 192, 1054
BsiSI CCGG 5 cut(s) 157, 226, 537, 656, 930
BslFI GGGAC 3 cut(s) 173, 233, 497
BslI CCNNNNNNNGG 4 cut(s) 97, 624, 1009, 1039
BsmFI GGGAC 3 cut(s) 173, 233, 497
BsnI GGCC 4 cut(s) 330, 405, 611, 662
Bsp119I TTCGAA 1 cut(s) 694
Bsp1286I GDGCHC 2 cut(s) 192, 1054
Bsp143I GATC 6 cut(s) 276, 457, 637, 781, 811, 843
BspACI CCGC 5 cut(s) 143, 193, 352, 439, 659
BspANI GGCC 4 cut(s) 330, 405, 611, 662
BspCNI CTCAG 4 cut(s) 504, 591, 597, 1000
BspFNI CGCG 6 cut(s) 145, 147, 195, 221, 354, 441
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 2 cut(s) 140, 249
BspPI GGATC 2 cut(s) 776, 806
BspT104I TTCGAA 1 cut(s) 694
BsrDI GCAATG 1 cut(s) 612
BsrFI RCCGGY 2 cut(s) 655, 929
BsrI ACTGG 2 cut(s) 406, 1033
BssAI RCCGGY 2 cut(s) 655, 929
BssECI CCNNGG 2 cut(s) 92, 243
BssMI GATC 6 cut(s) 276, 457, 637, 781, 811, 843
BssNI GRCGYC 2 cut(s) 204, 387
Bst4CI ACNGT 6 cut(s) 100, 256, 508, 667, 919, 1018
Bst6I CTCTTC 1 cut(s) 86
BstACI GRCGYC 2 cut(s) 204, 387
BstBAI YACGTR 1 cut(s) 377
BstBI TTCGAA 1 cut(s) 694
BstC8I GCNNGC 3 cut(s) 208, 365, 391
BstDEI CTNAG 5 cut(s) 491, 599, 605, 645, 1008
BstEII GGTNACC 1 cut(s) 651
BstENI CCTNNNNNAGG 1 cut(s) 1007
BstF5I GGATG 1 cut(s) 333
BstFNI CGCG 6 cut(s) 145, 147, 195, 221, 354, 441
BstHHI GCGC 6 cut(s) 147, 223, 356, 369, 443, 1002
BstKTI GATC 6 cut(s) 279, 460, 640, 784, 814, 846
BstMBI GATC 6 cut(s) 276, 457, 637, 781, 811, 843
BstMCI CGRYCG 1 cut(s) 352
BstMWI GCNNNNNNNGC 7 cut(s) 212, 360, 390, 417, 447, 589, 941
BstNSI RCATGY 2 cut(s) 166, 367
BstPI GGTNACC 1 cut(s) 651
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 1017
BstSLI GKGCMC 1 cut(s) 1054
BstUI CGCG 6 cut(s) 145, 147, 195, 221, 354, 441
BstV1I GCAGC 1 cut(s) 931
BstV2I GAAGAC 1 cut(s) 50
BstXI CCANNNNNNTGG 1 cut(s) 326
BsuI GTATCC 3 cut(s) 27, 709, 1006
BsuRI GGCC 4 cut(s) 330, 405, 611, 662
BtgZI GCGATG 1 cut(s) 298
BtsCI GGATG 1 cut(s) 333
BtsI GCAGTG 1 cut(s) 1002
BtsIMutI CAGTG 6 cut(s) 198, 413, 663, 895, 924, 1002
Cac8I GCNNGC 3 cut(s) 208, 365, 391
CaiI CAGNNNCTG 2 cut(s) 598, 988
CciI TCATGA 1 cut(s) 234
CfoI GCGC 6 cut(s) 147, 223, 356, 369, 443, 1002
Cfr10I RCCGGY 2 cut(s) 655, 929
Cfr13I GGNCC 3 cut(s) 247, 484, 609
CseI GACGC 5 cut(s) 136, 199, 212, 395, 1001
Csp6I GTAC 1 cut(s) 130
CspAI ACCGGT 1 cut(s) 929
CviAII CATG 7 cut(s) 163, 235, 358, 364, 641, 676, 802
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 5 cut(s) 491, 599, 605, 645, 1008
DpnI GATC 6 cut(s) 278, 459, 639, 783, 813, 845
DpnII GATC 6 cut(s) 276, 457, 637, 781, 811, 843
DrdI GACNNNNNNGTC 2 cut(s) 209, 506
DseDI GACNNNNNNGTC 2 cut(s) 209, 506
EaeI YGGCCR 2 cut(s) 403, 660
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Ecl136II GAGCTC 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 192
Eco32I GATATC 1 cut(s) 886
Eco47I GGWCC 2 cut(s) 247, 484
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 837
Eco72I CACGTG 1 cut(s) 377
Eco91I GGTNACC 1 cut(s) 651
EcoICRI GAGCTC 1 cut(s) 190
EcoNI CCTNNNNNAGG 1 cut(s) 1007
EcoO109I RGGNCCY 2 cut(s) 247, 484
EcoO65I GGTNACC 1 cut(s) 651
EcoRV GATATC 1 cut(s) 886
EcoT38I GRGCYC 1 cut(s) 192
FaeI CATG 7 cut(s) 166, 238, 361, 367, 644, 679, 805
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FaqI GGGAC 3 cut(s) 173, 233, 497
FatI CATG 7 cut(s) 162, 234, 357, 363, 640, 675, 801
FauI CCCGC 1 cut(s) 150
FauNDI CATATG 1 cut(s) 1056
FbaI TGATCA 1 cut(s) 843
Fnu4HI GCNGC 2 cut(s) 660, 945
FokI GGATG 1 cut(s) 320
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 2 cut(s) 660, 945
FspBI CTAG 1 cut(s) 467
GlaI GCGC 6 cut(s) 146, 222, 355, 368, 442, 1001
GluI GCNGC 2 cut(s) 660, 945
HaeIII GGCC 4 cut(s) 330, 405, 611, 662
HapII CCGG 5 cut(s) 157, 226, 537, 656, 930
HgaI GACGC 5 cut(s) 136, 199, 212, 395, 1001
HhaI GCGC 6 cut(s) 147, 223, 356, 369, 443, 1002
Hin1I GRCGYC 2 cut(s) 204, 387
Hin1II CATG 7 cut(s) 166, 238, 361, 367, 644, 679, 805
Hin6I GCGC 6 cut(s) 145, 221, 354, 367, 441, 1000
HinP1I GCGC 6 cut(s) 145, 221, 354, 367, 441, 1000
HinfI GANTC 6 cut(s) 231, 530, 545, 696, 724, 923
HpaII CCGG 5 cut(s) 157, 226, 537, 656, 930
HphI GGTGA 3 cut(s) 334, 466, 645
Hpy166II GTNNAC 1 cut(s) 1052
Hpy188I TCNGA 7 cut(s) 96, 104, 349, 499, 529, 553, 1009
Hpy188III TCNNGA 7 cut(s) 235, 274, 280, 728, 815, 847, 976
Hpy8I GTNNAC 1 cut(s) 1052
Hpy99I CGWCG 9 cut(s) 215, 260, 275, 308, 389, 398, 404, 428, 512
HpyAV CCTTC 3 cut(s) 113, 579, 733
HpyCH4III ACNGT 6 cut(s) 100, 256, 508, 667, 919, 1018
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 3 cut(s) 893, 947, 1052
HpyF10VI GCNNNNNNNGC 7 cut(s) 212, 360, 390, 417, 447, 589, 941
HpyF3I CTNAG 5 cut(s) 491, 599, 605, 645, 1008
HpySE526I ACGT 1 cut(s) 376
Hsp92I GRCGYC 2 cut(s) 204, 387
Hsp92II CATG 7 cut(s) 166, 238, 361, 367, 644, 679, 805
HspAI GCGC 6 cut(s) 145, 221, 354, 367, 441, 1000
Ksp22I TGATCA 1 cut(s) 843
Kzo9I GATC 6 cut(s) 276, 457, 637, 781, 811, 843
LmnI GCTCC 6 cut(s) 144, 195, 228, 425, 500, 706
Lsp1109I GCAGC 1 cut(s) 931
MaeI CTAG 1 cut(s) 467
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 5 cut(s) 167, 377, 472, 651, 667
MalI GATC 6 cut(s) 278, 459, 639, 783, 813, 845
MboI GATC 6 cut(s) 276, 457, 637, 781, 811, 843
MboII GAAGA 4 cut(s) 50, 73, 748, 911
MhlI GDGCHC 2 cut(s) 192, 1054
MluCI AATT 3 cut(s) 28, 564, 1043
MlyI GAGTC 2 cut(s) 240, 718
MmeI TCCRAC 2 cut(s) 372, 522
MseI TTAA 2 cut(s) 285, 939
MslI CAYNNNNRTG 2 cut(s) 362, 674
MspI CCGG 5 cut(s) 157, 226, 537, 656, 930
MspR9I CCNGG 1 cut(s) 158
MvnI CGCG 6 cut(s) 145, 147, 195, 221, 354, 441
MwoI GCNNNNNNNGC 7 cut(s) 212, 360, 390, 417, 447, 589, 941
NciI CCSGG 1 cut(s) 158
NdeI CATATG 1 cut(s) 1056
NdeII GATC 6 cut(s) 276, 457, 637, 781, 811, 843
NlaIII CATG 7 cut(s) 166, 238, 361, 367, 644, 679, 805
NlaIV GGNNCC 2 cut(s) 140, 249
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 5 cut(s) 167, 377, 472, 651, 667
NspI RCATGY 2 cut(s) 166, 367
NspV TTCGAA 1 cut(s) 694
PaeI GCATGC 1 cut(s) 367
PagI TCATGA 1 cut(s) 234
PcsI WCGNNNNNNNCGW 4 cut(s) 52, 270, 276, 408
PfeI GAWTC 4 cut(s) 530, 545, 696, 923
PflFI GACNNNGTC 2 cut(s) 269, 797
PfoI TCCNGGA 1 cut(s) 156
PinAI ACCGGT 1 cut(s) 929
PkrI GCNGC 2 cut(s) 661, 946
PleI GAGTC 2 cut(s) 239, 718
PmaCI CACGTG 1 cut(s) 377
PmlI CACGTG 1 cut(s) 377
PpsI GAGTC 2 cut(s) 239, 718
Ppu21I YACGTR 1 cut(s) 377
PpuMI RGGWCCY 2 cut(s) 247, 484
Psp124BI GAGCTC 1 cut(s) 192
Psp5II RGGWCCY 2 cut(s) 247, 484
PspCI CACGTG 1 cut(s) 377
PspEI GGTNACC 1 cut(s) 651
PspN4I GGNNCC 2 cut(s) 140, 249
PspPI GGNCC 3 cut(s) 247, 484, 609
PspPPI RGGWCCY 2 cut(s) 247, 484
PstNI CAGNNNCTG 2 cut(s) 598, 988
PsyI GACNNNGTC 2 cut(s) 269, 797
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
RseI CAYNNNNRTG 2 cut(s) 362, 674
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 2 cut(s) 285, 939
SatI GCNGC 2 cut(s) 660, 945
Sau3AI GATC 6 cut(s) 276, 457, 637, 781, 811, 843
Sau96I GGNCC 3 cut(s) 247, 484, 609
SchI GAGTC 2 cut(s) 240, 718
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 2 cut(s) 192, 1054
SfcI CTRYAG 1 cut(s) 1017
SfuI TTCGAA 1 cut(s) 694
SgrAI CRCCGGYG 1 cut(s) 655
SinI GGWCC 2 cut(s) 247, 484
SmiMI CAYNNNNRTG 2 cut(s) 362, 674
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
SphI GCATGC 1 cut(s) 367
Sse9I AATT 3 cut(s) 28, 564, 1043
SsiI CCGC 5 cut(s) 143, 193, 352, 439, 659
SspMI CTAG 1 cut(s) 467
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 156
TaaI ACNGT 6 cut(s) 100, 256, 508, 667, 919, 1018
TaiI ACGT 1 cut(s) 379
TaqI TCGA 6 cut(s) 264, 273, 279, 426, 456, 694
TasI AATT 3 cut(s) 28, 564, 1043
TauI GCSGC 1 cut(s) 662
TfiI GAWTC 4 cut(s) 530, 545, 696, 923
Tru1I TTAA 2 cut(s) 285, 939
Tru9I TTAA 2 cut(s) 285, 939
TscAI CASTG 6 cut(s) 205, 413, 670, 895, 924, 1002
TseFI GTSAC 5 cut(s) 167, 377, 472, 651, 667
TseI GCWGC 1 cut(s) 944
Tsp45I GTSAC 5 cut(s) 167, 377, 472, 651, 667
TspDTI ATGAA 4 cut(s) 301, 664, 696, 852
TspGWI ACGGA 3 cut(s) 44, 283, 412
TspRI CASTG 6 cut(s) 205, 413, 670, 895, 924, 1002
Tth111I GACNNNGTC 2 cut(s) 269, 797
VneI GTGCAC 1 cut(s) 1050
VpaK11BI GGWCC 2 cut(s) 247, 484
XagI CCTNNNNNAGG 1 cut(s) 1007
XceI RCATGY 2 cut(s) 166, 367
XspI CTAG 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.