Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004335

Physical Location & Seq

Genomic Coordinates Reverse (-)

15458656 .. 15461114

Gene Structure 2459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G132400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGAAGGCAAATCGTACCAGAGGCTACTGCGGGTCAAAATCCGTGAAATGCGTGACGACTACATGAAGTTCGAGCTCCGCGACGCCGACGCCAGTGTCGCCAACGCGCTCCGGCGAGTGATGATCGCTGAGGTCCCCACCGTCGCCATCGACCTCGTCGAGATCCAGATCAACTCACTCGGCCTCATCCCGTTGACATCCGACCAAGCCATGAGCATGCGCTTCTCAAGTGACTGCGACTCCTGCGACGGCGACGGCCAGTGCGAGTTCTGCTCCGTCGAGTTTCATCTTCGCGGCAAGTGCCATTCCGACCAAACCCCAGACTTCACTATCAAGGACCTTCTCAGCTCTGACCACACCGTCGTCCCCGTCGATTTCTCCGATTCCGCCGGCATGGAATCTTCCAAACAAAAGGATAATCATTGTGAAGTTGCGAAGGGGGCAAGAGCTGATTCATCTGCAGCCACTGTCACTTTCATGTACGAACCCGATATTCAAATCAATGAGGAGTTGATGGATATGTTGACTCTTGATGAGAAGAAGGCTTGGGTTGAAAGTAGTCCTACCAAAGTCTTTGACTTTGATCCTAAAACCGAGAAGGTCGTCGTGGTTGATCCTGAAGCATACACCTATGATGATGAAGTGATCAAGAAAGCAGAAGCTATGGGGAAGCCTGGGCTTGTGGATATCATTGCAAAAGAAGATAGTTTTATTTTCACAGTGGAATCTACTGGTGCTGTCAAAGCTTCTCAGTTGTTACTCAATGCCATCGAAGTCCTGAACCAGAAACTGGATGCAGTGCGCCTTTCTGAGGATACTGTAGAAGCTGATGATCAATTTGGTGAATTAGGTGCTCATATGCGAGGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005730 GO:0005737 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009888 GO:0010374 GO:0010375 GO:0016591 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0090558 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_A_bac RNA_pol_L

Protein Analysis

291

Amino Acids

32.16

Weight (kDa)

4.49

Isoelectric Point (pI)

31.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15400 AT2G15400 AT2G15430 AT2G15430 AT2G15430
fragaria_vesca	FvH4_2g05450
malus_domestica	MD05G1087400.v1.1 MD10G1096200.v1.1
prunus_persica	Prupe.8G132000_v2.0.a1 Prupe.8G132000_v2.0.a1 Prupe.8G132400_v2.0.a1
pyrus_communis	pycom05g08690
rosa_chinensis	RchiOBHm_Chr5g0063881 RchiOBHm_Chr6g0255731
rosa_laevigata	RLG00000014818 RLG00000027736
rosa_multiflora	Rmu_sc0009240.1_g000038 Rmu_ssc0000136.1_g000018
rosa_roxburghii	Rroxscaffold_7G00209720
rosa_rugosa	Rorug05G0560800 Rorug06G0006400
rosa_samantha	Rh1DG021100 Rh2DG345600 Rh2DG346900 Rh5CG269200 Rh6AG078900 Rh6BG072000 Rh6CG070100 Rh6DG067300 Rh7AG302700 Rh7CG321200
rosa_wichuraiana	Rw6G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	95, 359
AccB7I	CCANNNNNTGG	1 cut(s)	790
AccII	CGCG	3 cut(s)	81, 107, 294
AciI	CCGC	4 cut(s)	31, 79, 294, 387
AclWI	GGATC	3 cut(s)	157, 578, 608
AcoI	YGGCCR	1 cut(s)	256
AcuI	CTGAAG	1 cut(s)	639
AcyI	GRCGYC	2 cut(s)	84, 90
AfaI	GTAC	2 cut(s)	17, 482
AfiI	CCNNNNNNNGG	2 cut(s)	790, 811
AgsI	TTSAA	2 cut(s)	497, 554
AjnI	CCWGG	1 cut(s)	673
AluBI	AGCT	6 cut(s)	76, 348, 449, 662, 746, 827
AluI	AGCT	6 cut(s)	76, 348, 449, 662, 746, 827
Alw21I	GWGCWC	2 cut(s)	78, 856
AlwI	GGATC	3 cut(s)	157, 578, 608
AlwNI	CAGNNNCTG	2 cut(s)	467, 790
AoxI	GGCC	2 cut(s)	181, 256
ApeKI	GCWGC	1 cut(s)	461
AspLEI	GCGC	3 cut(s)	109, 222, 804
AspS9I	GGNCC	2 cut(s)	133, 337
AsuHPI	GGTGA	1 cut(s)	854
AvaII	GGWCC	2 cut(s)	133, 337
BanII	GRGCYC	1 cut(s)	78
Bbv12I	GWGCWC	2 cut(s)	78, 856
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	473
BccI	CCATC	3 cut(s)	155, 508, 776
BceAI	ACGGC	2 cut(s)	265, 271
BciT130I	CCWGG	1 cut(s)	675
BciVI	GTATCC	1 cut(s)	808
BclI	TGATCA	2 cut(s)	645, 832
BfmI	CTRYAG	2 cut(s)	459, 819
BfuI	GTATCC	1 cut(s)	808
BisI	GCNGC	2 cut(s)	295, 462
BlsI	GCNGC	2 cut(s)	296, 463
Bme1390I	CCNGG	1 cut(s)	675
Bme18I	GGWCC	2 cut(s)	133, 337
BmgT120I	GGNCC	2 cut(s)	133, 337
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	675
BmsI	GCATC	1 cut(s)	784
BplI	GAGNNNNNCTC	2 cut(s)	257, 289
Bpu10I	CCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	211
BsaBI	GATNNNNATC	1 cut(s)	167
BsaHI	GRCGYC	2 cut(s)	84, 90
BsaJI	CCNNGG	1 cut(s)	674
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	2 cut(s)	790, 811
Bse118I	RCCGGY	1 cut(s)	389
Bse1I	ACTGG	4 cut(s)	93, 259, 736, 795
Bse3DI	GCAATG	1 cut(s)	690
Bse8I	GATNNNNATC	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	1 cut(s)	674
BseGI	GGATG	3 cut(s)	186, 197, 799
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	2 cut(s)	790, 811
BseMI	GCAATG	1 cut(s)	690
BseMII	CTCAG	4 cut(s)	120, 358, 764, 801
BseNI	ACTGG	4 cut(s)	93, 259, 736, 795
BseRI	GAGGAG	1 cut(s)	521
BseXI	GCAGC	1 cut(s)	473
Bsh1236I	CGCG	3 cut(s)	81, 107, 294
BshFI	GGCC	2 cut(s)	183, 258
BsiHKAI	GWGCWC	2 cut(s)	78, 856
BsiSI	CCGG	2 cut(s)	112, 390
BslFI	GGGAC	2 cut(s)	119, 350
BslI	CCNNNNNNNGG	2 cut(s)	790, 811
BsmFI	GGGAC	2 cut(s)	119, 350
BsnI	GGCC	2 cut(s)	183, 258
Bsp1286I	GDGCHC	2 cut(s)	78, 856
Bsp143I	GATC	7 cut(s)	123, 162, 168, 583, 613, 645, 832
BspACI	CCGC	4 cut(s)	31, 79, 294, 387
BspANI	GGCC	2 cut(s)	183, 258
BspCNI	CTCAG	4 cut(s)	121, 357, 763, 802
BspFNI	CGCG	3 cut(s)	81, 107, 294
BspLI	GGNNCC	1 cut(s)	135
BspMAI	CTGCAG	1 cut(s)	463
BspPI	GGATC	3 cut(s)	157, 578, 608
BsrDI	GCAATG	1 cut(s)	690
BsrFI	RCCGGY	1 cut(s)	389
BsrI	ACTGG	4 cut(s)	93, 259, 736, 795
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	1 cut(s)	674
BssMI	GATC	7 cut(s)	123, 162, 168, 583, 613, 645, 832
BssNI	GRCGYC	2 cut(s)	84, 90
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	5 cut(s)	142, 361, 469, 721, 820
BstACI	GRCGYC	2 cut(s)	84, 90
BstC8I	GCNNGC	2 cut(s)	218, 391
BstDEI	CTNAG	4 cut(s)	129, 344, 750, 810
BstENI	CCTNNNNNAGG	1 cut(s)	809
BstF5I	GGATG	3 cut(s)	186, 197, 799
BstFNI	CGCG	3 cut(s)	81, 107, 294
BstHHI	GCGC	3 cut(s)	109, 222, 804
BstKTI	GATC	7 cut(s)	126, 165, 171, 586, 616, 648, 835
BstMBI	GATC	7 cut(s)	123, 162, 168, 583, 613, 645, 832
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 243, 270, 300, 440, 743
BstNI	CCWGG	1 cut(s)	675
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	673
BstSFI	CTRYAG	2 cut(s)	459, 819
BstUI	CGCG	3 cut(s)	81, 107, 294
BstV1I	GCAGC	1 cut(s)	473
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	808
BsuRI	GGCC	2 cut(s)	183, 258
BtsCI	GGATG	3 cut(s)	186, 197, 799
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	5 cut(s)	100, 266, 465, 726, 804
Cac8I	GCNNGC	2 cut(s)	218, 391
CaiI	CAGNNNCTG	2 cut(s)	467, 790
CfoI	GCGC	3 cut(s)	109, 222, 804
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	2 cut(s)	133, 337
CseI	GACGC	2 cut(s)	92, 98
Csp6I	GTAC	2 cut(s)	16, 481
CviAII	CATG	5 cut(s)	64, 211, 217, 394, 478
CviQI	GTAC	2 cut(s)	16, 481
DdeI	CTNAG	4 cut(s)	129, 344, 750, 810
DpnI	GATC	7 cut(s)	125, 164, 170, 585, 615, 647, 834
DpnII	GATC	7 cut(s)	123, 162, 168, 583, 613, 645, 832
DrdI	GACNNNNNNGTC	2 cut(s)	95, 359
DseDI	GACNNNNNNGTC	2 cut(s)	95, 359
EaeI	YGGCCR	1 cut(s)	256
EciI	GGCGGA	1 cut(s)	376
Ecl136II	GAGCTC	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	78
Eco32I	GATATC	1 cut(s)	688
Eco47I	GGWCC	2 cut(s)	133, 337
Eco53kI	GAGCTC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	639
EcoICRI	GAGCTC	1 cut(s)	76
EcoNI	CCTNNNNNAGG	1 cut(s)	809
EcoO109I	RGGNCCY	2 cut(s)	133, 337
EcoRII	CCWGG	1 cut(s)	673
EcoRV	GATATC	1 cut(s)	688
EcoT38I	GRGCYC	1 cut(s)	78
FaeI	CATG	5 cut(s)	67, 214, 220, 397, 481
FaqI	GGGAC	2 cut(s)	119, 350
FatI	CATG	5 cut(s)	63, 210, 216, 393, 477
FauI	CCCGC	1 cut(s)	24
FauNDI	CATATG	1 cut(s)	858
FbaI	TGATCA	2 cut(s)	645, 832
Fnu4HI	GCNGC	2 cut(s)	295, 462
FokI	GGATG	3 cut(s)	173, 184, 806
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	2 cut(s)	295, 462
GlaI	GCGC	3 cut(s)	108, 221, 803
GluI	GCNGC	2 cut(s)	295, 462
HaeIII	GGCC	2 cut(s)	183, 258
HapII	CCGG	2 cut(s)	112, 390
HgaI	GACGC	2 cut(s)	92, 98
HhaI	GCGC	3 cut(s)	109, 222, 804
Hin1I	GRCGYC	2 cut(s)	84, 90
Hin1II	CATG	5 cut(s)	67, 214, 220, 397, 481
Hin6I	GCGC	3 cut(s)	107, 220, 802
HinP1I	GCGC	3 cut(s)	107, 220, 802
HincII	GTYRAC	2 cut(s)	195, 525
HindII	GTYRAC	2 cut(s)	195, 525
HindIII	AAGCTT	1 cut(s)	744
HinfI	GANTC	6 cut(s)	239, 383, 398, 452, 526, 725
HpaII	CCGG	2 cut(s)	112, 390
HphI	GGTGA	1 cut(s)	854
Hpy166II	GTNNAC	2 cut(s)	195, 525
Hpy188I	TCNGA	5 cut(s)	202, 310, 352, 382, 811
Hpy188III	TCNNGA	6 cut(s)	160, 166, 530, 617, 649, 778
Hpy8I	GTNNAC	2 cut(s)	195, 525
HpyAV	CCTTC	4 cut(s)	350, 430, 535, 592
HpyCH4III	ACNGT	5 cut(s)	142, 361, 469, 721, 820
HpyCH4V	TGCA	3 cut(s)	461, 695, 797
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 243, 270, 300, 440, 743
HpyF3I	CTNAG	4 cut(s)	129, 344, 750, 810
Hsp92I	GRCGYC	2 cut(s)	84, 90
Hsp92II	CATG	5 cut(s)	67, 214, 220, 397, 481
HspAI	GCGC	3 cut(s)	107, 220, 802
KroI	GCCGGC	1 cut(s)	389
KroNI	GCCGGC	1 cut(s)	391
Ksp22I	TGATCA	2 cut(s)	645, 832
Kzo9I	GATC	7 cut(s)	123, 162, 168, 583, 613, 645, 832
LmnI	GCTCC	3 cut(s)	81, 114, 278
Lsp1109I	GCAGC	1 cut(s)	473
LweI	GCATC	1 cut(s)	784
MaeIII	GTNAC	4 cut(s)	53, 230, 469, 756
MalI	GATC	7 cut(s)	125, 164, 170, 585, 615, 647, 834
MboI	GATC	7 cut(s)	123, 162, 168, 583, 613, 645, 832
MboII	GAAGA	4 cut(s)	281, 393, 550, 713
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	2 cut(s)	78, 856
MluCI	AATT	2 cut(s)	836, 845
MlyI	GAGTC	2 cut(s)	233, 520
MmeI	TCCRAC	2 cut(s)	225, 333
MnlI	CCTC	8 cut(s)	15, 124, 164, 194, 499, 805, 857, 860
MroNI	GCCGGC	1 cut(s)	389
MslI	CAYNNNNRTG	2 cut(s)	215, 476
MspI	CCGG	2 cut(s)	112, 390
MspR9I	CCNGG	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	675
MvnI	CGCG	3 cut(s)	81, 107, 294
MwoI	GCNNNNNNNGC	6 cut(s)	98, 243, 270, 300, 440, 743
NaeI	GCCGGC	1 cut(s)	391
NdeI	CATATG	1 cut(s)	858
NdeII	GATC	7 cut(s)	123, 162, 168, 583, 613, 645, 832
NgoMIV	GCCGGC	1 cut(s)	389
NlaIII	CATG	5 cut(s)	67, 214, 220, 397, 481
NlaIV	GGNNCC	1 cut(s)	135
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	3 cut(s)	53, 230, 469
NspI	RCATGY	1 cut(s)	220
PaeI	GCATGC	1 cut(s)	220
PcsI	WCGNNNNNNNCGW	5 cut(s)	78, 156, 261, 369, 378
PdiI	GCCGGC	1 cut(s)	391
PfeI	GAWTC	4 cut(s)	383, 398, 452, 725
PflFI	GACNNNGTC	1 cut(s)	155
PflMI	CCANNNNNTGG	1 cut(s)	790
PkrI	GCNGC	2 cut(s)	296, 463
PleI	GAGTC	2 cut(s)	233, 520
PpsI	GAGTC	2 cut(s)	233, 520
PpuMI	RGGWCCY	2 cut(s)	133, 337
Psp124BI	GAGCTC	1 cut(s)	78
Psp5II	RGGWCCY	2 cut(s)	133, 337
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	133, 337
PspPPI	RGGWCCY	2 cut(s)	133, 337
PstI	CTGCAG	1 cut(s)	463
PstNI	CAGNNNCTG	2 cut(s)	467, 790
PsuI	RGATCY	1 cut(s)	162
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	2 cut(s)	17, 482
RsaNI	GTAC	2 cut(s)	16, 481
RseI	CAYNNNNRTG	2 cut(s)	215, 476
SacI	GAGCTC	1 cut(s)	78
SatI	GCNGC	2 cut(s)	295, 462
Sau3AI	GATC	7 cut(s)	123, 162, 168, 583, 613, 645, 832
Sau96I	GGNCC	2 cut(s)	133, 337
SchI	GAGTC	2 cut(s)	233, 520
ScrFI	CCNGG	1 cut(s)	675
SduI	GDGCHC	2 cut(s)	78, 856
SfaNI	GCATC	1 cut(s)	784
SfcI	CTRYAG	2 cut(s)	459, 819
SinI	GGWCC	2 cut(s)	133, 337
SmiMI	CAYNNNNRTG	2 cut(s)	215, 476
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
SphI	GCATGC	1 cut(s)	220
Sse9I	AATT	2 cut(s)	836, 845
SsiI	CCGC	4 cut(s)	31, 79, 294, 387
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	673
TaaI	ACNGT	5 cut(s)	142, 361, 469, 721, 820
TaqI	TCGA	6 cut(s)	72, 150, 159, 279, 372, 771
TasI	AATT	2 cut(s)	836, 845
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	4 cut(s)	383, 398, 452, 725
TscAI	CASTG	5 cut(s)	100, 266, 472, 726, 804
TseFI	GTSAC	3 cut(s)	53, 230, 469
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	3 cut(s)	53, 230, 469
TspDTI	ATGAA	5 cut(s)	80, 275, 444, 466, 654
TspGWI	ACGGA	2 cut(s)	32, 265
TspRI	CASTG	5 cut(s)	100, 266, 472, 726, 804
Tth111I	GACNNNGTC	1 cut(s)	155
Van91I	CCANNNNNTGG	1 cut(s)	790
VpaK11BI	GGWCC	2 cut(s)	133, 337
XagI	CCTNNNNNAGG	1 cut(s)	809
XceI	RCATGY	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.