Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009240.1

Orthogroup ID

OG0004335

Physical Location & Seq

Genomic Coordinates Reverse (-)

103433 .. 104141

Gene Structure 709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009240.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atggagaggaaatcgtaccagaggttccctcgggtgaaaatcagtgaaatcaggcacgattacctcaagttcaagctctgcgacactgacaagagtgtggctaacgggctctggcgcgtgatgatcgctaaggtccctaccgtctccatcgacctcttcaagatcgaaatcaactcctccgtcctcaatgacgagttcgtcgtccaccgtctcggcctcatccccttgaccagcgatcgcgccatgagcatgagcttctcatgtcgctgcgatgcctgcgatggtgacggccagtgcgagtactgcttcatcgagtttcacctccgcgcttgctaccacttcgaccaaaccctagatgtcaccagcaaggaactcctcagctccgaccacaccgttgtcctgtctccggttacgaagcttccgaacagagttggaaatggggcaagagctgaggctgagagctattgcaagaaaagggattggcaaagaattgagagccaagaattctacactccaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005730 GO:0005737 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009888 GO:0010374 GO:0010375 GO:0016591 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0090558 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_A_bac RNA_pol_L

Protein Analysis

173

Amino Acids

20.0

Weight (kDa)

6.94

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15400 AT2G15400 AT2G15430 AT2G15430 AT2G15430
fragaria_vesca	FvH4_2g05450
malus_domestica	MD05G1087400.v1.1 MD10G1096200.v1.1
prunus_persica	Prupe.8G132000_v2.0.a1 Prupe.8G132000_v2.0.a1 Prupe.8G132400_v2.0.a1
pyrus_communis	pycom05g08690
rosa_chinensis	RchiOBHm_Chr5g0063881 RchiOBHm_Chr6g0255731
rosa_laevigata	RLG00000014818 RLG00000027736
rosa_multiflora	Rmu_sc0009240.1_g000038 Rmu_ssc0000136.1_g000018
rosa_roxburghii	Rroxscaffold_7G00209720
rosa_rugosa	Rorug05G0560800 Rorug06G0006400
rosa_samantha	Rh1DG021100 Rh2DG345600 Rh2DG346900 Rh5CG269200 Rh6AG078900 Rh6BG072000 Rh6CG070100 Rh6DG067300 Rh7AG302700 Rh7CG321200
rosa_wichuraiana	Rw6G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	197
AccII	CGCG	3 cut(s)	117, 240, 327
AciI	CCGC	1 cut(s)	325
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	503
AfaI	GTAC	2 cut(s)	17, 302
AfiI	CCNNNNNNNGG	1 cut(s)	406
AgsI	TTSAA	2 cut(s)	73, 160
AluBI	AGCT	6 cut(s)	76, 255, 381, 418, 449, 462
AluI	AGCT	6 cut(s)	76, 255, 381, 418, 449, 462
Alw26I	GTCTC	3 cut(s)	148, 215, 408
Ama87I	CYCGRG	1 cut(s)	30
AoxI	GGCC	2 cut(s)	214, 289
ApeKI	GCWGC	1 cut(s)	267
ApoI	RAATTY	1 cut(s)	503
AsiSI	GCGATCGC	1 cut(s)	238
AspLEI	GCGC	3 cut(s)	117, 242, 329
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	4 cut(s)	46, 296, 311, 352
AvaI	CYCGRG	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	111
BbvCI	CCTCAGC	2 cut(s)	377, 450
BbvI	GCAGC	1 cut(s)	254
BccI	CCATC	2 cut(s)	155, 275
BceAI	ACGGC	1 cut(s)	304
BcoDI	GTCTC	3 cut(s)	148, 215, 408
BfaI	CTAG	1 cut(s)	353
BisI	GCNGC	1 cut(s)	268
BlsI	GCNGC	1 cut(s)	269
BmcAI	AGTACT	1 cut(s)	302
Bme18I	GGWCC	1 cut(s)	133
BmeT110I	CYCGRG	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	2 cut(s)	26, 135
BmsI	GCATC	1 cut(s)	262
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
Bpu10I	CCTNAGC	3 cut(s)	129, 377, 450
BpuEI	CTTGAG	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	406
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse1I	ACTGG	1 cut(s)	292
Bse8I	GATNNNNATC	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	1 cut(s)	219
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMII	CTCAG	3 cut(s)	391, 441, 447
BseNI	ACTGG	1 cut(s)	292
BseRI	GAGGAG	2 cut(s)	166, 365
BseXI	GCAGC	1 cut(s)	254
Bsh1236I	CGCG	3 cut(s)	117, 240, 327
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	2 cut(s)	216, 291
BsiEI	CGRYCG	1 cut(s)	238
BsiHKCI	CYCGRG	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	407
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmAI	GTCTC	3 cut(s)	148, 215, 408
BsmBI	CGTCTC	2 cut(s)	148, 215
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	216, 291
BsoBI	CYCGRG	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	123, 162, 235
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	2 cut(s)	216, 291
BspCNI	CTCAG	3 cut(s)	390, 442, 448
BspFNI	CGCG	3 cut(s)	117, 240, 327
BspLI	GGNNCC	2 cut(s)	26, 135
BsrI	ACTGG	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	3 cut(s)	123, 162, 235
Bst4CI	ACNGT	3 cut(s)	142, 209, 394
Bst6I	CTCTTC	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	277, 331
BstDEI	CTNAG	4 cut(s)	129, 377, 450, 456
BstF5I	GGATG	1 cut(s)	219
BstFNI	CGCG	3 cut(s)	117, 240, 327
BstHHI	GCGC	3 cut(s)	117, 242, 329
BstKTI	GATC	3 cut(s)	126, 165, 238
BstMAI	GTCTC	3 cut(s)	148, 215, 408
BstMBI	GATC	3 cut(s)	123, 162, 235
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	3 cut(s)	246, 276, 303
BstUI	CGCG	3 cut(s)	117, 240, 327
BstV1I	GCAGC	1 cut(s)	254
BsuRI	GGCC	2 cut(s)	216, 291
BtgZI	GCGATG	2 cut(s)	285, 294
BtsCI	GGATG	1 cut(s)	219
BtsIMutI	CAGTG	3 cut(s)	49, 84, 299
Cac8I	GCNNGC	2 cut(s)	277, 331
CfoI	GCGC	3 cut(s)	117, 242, 329
Cfr13I	GGNCC	1 cut(s)	133
Csp6I	GTAC	2 cut(s)	16, 301
CviAII	CATG	3 cut(s)	244, 250, 261
CviQI	GTAC	2 cut(s)	16, 301
DdeI	CTNAG	4 cut(s)	129, 377, 450, 456
DpnI	GATC	3 cut(s)	125, 164, 237
DpnII	GATC	3 cut(s)	123, 162, 235
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
EaeI	YGGCCR	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	30
EcoO109I	RGGNCCY	1 cut(s)	133
EcoRI	GAATTC	1 cut(s)	503
EcoT38I	GRGCYC	1 cut(s)	111
Esp3I	CGTCTC	2 cut(s)	148, 215
FaeI	CATG	3 cut(s)	247, 253, 264
FaiI	YATR	3 cut(s)	245, 251, 262
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	3 cut(s)	243, 249, 260
Fnu4HI	GCNGC	1 cut(s)	268
FokI	GGATG	1 cut(s)	206
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	268
FspBI	CTAG	1 cut(s)	353
GlaI	GCGC	3 cut(s)	116, 241, 328
GluI	GCNGC	1 cut(s)	268
HaeIII	GGCC	2 cut(s)	216, 291
HapII	CCGG	1 cut(s)	407
HhaI	GCGC	3 cut(s)	117, 242, 329
Hin1II	CATG	3 cut(s)	247, 253, 264
Hin6I	GCGC	3 cut(s)	115, 240, 327
HinP1I	GCGC	3 cut(s)	115, 240, 327
HindIII	AAGCTT	1 cut(s)	416
HpaII	CCGG	1 cut(s)	407
HphI	GGTGA	4 cut(s)	46, 296, 311, 352
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	385, 423
Hpy188III	TCNNGA	1 cut(s)	160
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	1 cut(s)	203
HpyCH4III	ACNGT	3 cut(s)	142, 209, 394
HpyCH4V	TGCA	1 cut(s)	468
HpyF10VI	GCNNNNNNNGC	3 cut(s)	246, 276, 303
HpyF3I	CTNAG	4 cut(s)	129, 377, 450, 456
Hsp92II	CATG	3 cut(s)	247, 253, 264
HspAI	GCGC	3 cut(s)	115, 240, 327
Kzo9I	GATC	3 cut(s)	123, 162, 235
LmnI	GCTCC	1 cut(s)	386
LpnPI	CCDG	9 cut(s)	32, 37, 97, 244, 289, 305, 376, 413, 420
Lsp1109I	GCAGC	1 cut(s)	254
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	353
MaeIII	GTNAC	3 cut(s)	284, 358, 409
MalI	GATC	3 cut(s)	125, 164, 237
MboI	GATC	3 cut(s)	123, 162, 235
MboII	GAAGA	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	3 cut(s)	489, 503, 517
MmeI	TCCRAC	2 cut(s)	408, 412
MseI	TTAA	1 cut(s)	520
MslI	CAYNNNNRTG	1 cut(s)	248
MspI	CCGG	1 cut(s)	407
MvnI	CGCG	3 cut(s)	117, 240, 327
MwoI	GCNNNNNNNGC	3 cut(s)	246, 276, 303
NdeII	GATC	3 cut(s)	123, 162, 235
NlaIII	CATG	3 cut(s)	247, 253, 264
NlaIV	GGNNCC	2 cut(s)	26, 135
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	2 cut(s)	284, 358
PcsI	WCGNNNNNNNCGW	3 cut(s)	198, 294, 419
PkrI	GCNGC	1 cut(s)	269
Ple19I	CGATCG	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	133
Psp5II	RGGWCCY	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	26, 135
PspPI	GGNCC	1 cut(s)	133
PspPPI	RGGWCCY	1 cut(s)	133
PsrI	GAACNNNNNNTAC	2 cut(s)	8, 40
PvuI	CGATCG	1 cut(s)	238
RgaI	GCGATCGC	1 cut(s)	238
RsaI	GTAC	2 cut(s)	17, 302
RsaNI	GTAC	2 cut(s)	16, 301
RseI	CAYNNNNRTG	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	520
SatI	GCNGC	1 cut(s)	268
Sau3AI	GATC	3 cut(s)	123, 162, 235
Sau96I	GGNCC	1 cut(s)	133
ScaI	AGTACT	1 cut(s)	302
SduI	GDGCHC	1 cut(s)	111
SfaAI	GCGATCGC	1 cut(s)	238
SfaNI	GCATC	1 cut(s)	262
SgfI	GCGATCGC	1 cut(s)	238
SinI	GGWCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	3 cut(s)	489, 503, 517
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	1 cut(s)	353
TaaI	ACNGT	3 cut(s)	142, 209, 394
TaqI	TCGA	4 cut(s)	150, 165, 312, 342
TasI	AATT	3 cut(s)	489, 503, 517
TatI	WGTACW	1 cut(s)	300
Tru1I	TTAA	1 cut(s)	520
Tru9I	TTAA	1 cut(s)	520
TscAI	CASTG	3 cut(s)	49, 91, 299
TseFI	GTSAC	2 cut(s)	284, 358
TseI	GCWGC	1 cut(s)	267
Tsp45I	GTSAC	2 cut(s)	284, 358
TspDTI	ATGAA	1 cut(s)	298
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	3 cut(s)	49, 91, 299
VpaK11BI	GGWCC	1 cut(s)	133
XapI	RAATTY	1 cut(s)	503
XspI	CTAG	1 cut(s)	353
ZrmI	AGTACT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.