Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004335

Physical Location & Seq

Genomic Coordinates Forward (+)

6733534 .. 6735819

Gene Structure 2286 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G15430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGACGGTGCCACATACCAAAGATTCCCAAAGATCAAGATCCGTGAGCTTAAAGATGATTACGCCAAGTTCGAGCTTCGTGAAACCGACGTTTCTATGGCCAACGCTCTCCGTCGCGTAATGATCTCCGAAGTCCCTACCGTCGCAATAGATCTAGTCGAAATCGAGGTTAATTCATCTGTACTCAACGACGAGTTCATTGCTCATCGATTAGGTCTCATTCCTCTCACTAGCGAACGTGCTATGAGCATGCGTTTCTCTCGAGATTGTGATGCTTGTGATGGAGATGGACAATGCGAGTTTTGCTCTGTTGAGTTTCGGCTTAGTTCTAAGTGTGTTACTGATCAAACCCTAGATGTTACTAGTAGGGATTTGTACAGTGCTGATCCTACTGTTACTCCTGTGGATTTCACTATTGACTCGTCTGTATCTGATTCAAGCGAGCACAAGGGAATTATCATTGTGAAACTGCGTCGGGGACAAGAGTTGAAGCTTAGAGCGATAGCGAGGAAAGGGATTGGGAAAGATCATGCGAAATGGTCTCCTGCAGCTACTGTTACGTTTATGTATGAGCCTGACATAATTATTAATGAAGATATGATGGATACTTTGTCAGACGAGGAAAAGATCGACTTGATTGAGAGCAGTCCTACCAAAGTGTTTGGCATGGATCCAGTCACCAGACAGGTTGTAGTGGTTGATCCTGAAGCATACACTTACGATGAAGAAGTGATCAAGAAAGCTGAAGCAATGGGGAAACCGGGACTCATTGAGATCAGTCCGAAAGATGACAGTTTTATATTCACTGTTGAGTCCACAGGTGCAGTGAAGGCTTCCCAACTGGTACTAAATGCCATTGATCTTCTGAAGCAGAAGCTTGATGCAGTCCGTCTCTCAGATGACACCGTAGAAGCGGATGATCAGTTTGGTGAACTCGGTGCCCATATGCGTGGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005730 GO:0005737 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009888 GO:0010374 GO:0010375 GO:0016591 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0090558 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_A_bac RNA_pol_L

Protein Analysis

319

Amino Acids

35.46

Weight (kDa)

4.63

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_L	PF01193	23 - 293	3.2e-20	RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_pol_A_bac	PF01000	58 - 179	2.1e-20	RNA polymerase Rpb3/RpoA insert domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15400 AT2G15400 AT2G15430 AT2G15430 AT2G15430
fragaria_vesca	FvH4_2g05450
malus_domestica	MD05G1087400.v1.1 MD10G1096200.v1.1
prunus_persica	Prupe.8G132000_v2.0.a1 Prupe.8G132000_v2.0.a1 Prupe.8G132400_v2.0.a1
pyrus_communis	pycom05g08690
rosa_chinensis	RchiOBHm_Chr5g0063881 RchiOBHm_Chr6g0255731
rosa_laevigata	RLG00000014818 RLG00000027736
rosa_multiflora	Rmu_sc0009240.1_g000038 Rmu_ssc0000136.1_g000018
rosa_roxburghii	Rroxscaffold_7G00209720
rosa_rugosa	Rorug05G0560800 Rorug06G0006400
rosa_samantha	Rh1DG021100 Rh2DG345600 Rh2DG346900 Rh5CG269200 Rh6AG078900 Rh6BG072000 Rh6CG070100 Rh6DG067300 Rh7AG302700 Rh7CG321200
rosa_wichuraiana	Rw6G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	8, 938
AccII	CGCG	1 cut(s)	117
AciI	CCGC	1 cut(s)	914
AclWI	GGATC	5 cut(s)	34, 380, 665, 678, 695
AcoI	YGGCCR	1 cut(s)	99
AcuI	CTGAAG	3 cut(s)	726, 765, 887
AfaI	GTAC	3 cut(s)	183, 377, 846
AgsI	TTSAA	2 cut(s)	438, 490
AhlI	ACTAGT	1 cut(s)	362
AluBI	AGCT	6 cut(s)	49, 76, 493, 551, 743, 877
AluI	AGCT	6 cut(s)	49, 76, 493, 551, 743, 877
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	3 cut(s)	221, 546, 896
AlwI	GGATC	5 cut(s)	34, 380, 665, 678, 695
AlwNI	CAGNNNCTG	1 cut(s)	554
Ama87I	CYCGRG	1 cut(s)	261
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	548
AseI	ATTAAT	1 cut(s)	588
AsuC2I	CCSGG	1 cut(s)	762
AsuHPI	GGTGA	2 cut(s)	670, 941
AvaI	CYCGRG	1 cut(s)	261
BaeGI	GKGCMC	1 cut(s)	943
BalI	TGGCCA	1 cut(s)	101
BamHI	GGATCC	1 cut(s)	670
BanI	GGYRCC	2 cut(s)	8, 938
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	1 cut(s)	560
BccI	CCATC	3 cut(s)	275, 281, 595
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciVI	GTATCC	1 cut(s)	598
BclI	TGATCA	3 cut(s)	343, 732, 919
BcnI	CCSGG	1 cut(s)	762
BcoDI	GTCTC	3 cut(s)	221, 546, 896
BcuI	ACTAGT	1 cut(s)	362
BfaI	CTAG	4 cut(s)	155, 231, 353, 363
BfmI	CTRYAG	1 cut(s)	546
BfuI	GTATCC	1 cut(s)	598
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	550
Bme1390I	CCNGG	1 cut(s)	762
BmeT110I	CYCGRG	1 cut(s)	261
BmiI	GGNNCC	3 cut(s)	10, 672, 940
BmrFI	CCNGG	1 cut(s)	762
BmsI	GCATC	2 cut(s)	262, 871
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpuMI	CCSGG	1 cut(s)	762
Bsa29I	ATCGAT	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	38
BsaI	GGTCTC	2 cut(s)	221, 546
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bse1I	ACTGG	2 cut(s)	674, 846
Bse3DI	GCAATG	2 cut(s)	198, 756
Bse8I	GATNNNNATC	1 cut(s)	38
BseCI	ATCGAT	1 cut(s)	208
BseGI	GGATG	1 cut(s)	922
BseJI	GATNNNNATC	1 cut(s)	38
BseMI	GCAATG	2 cut(s)	198, 756
BseMII	CTCAG	1 cut(s)	909
BseNI	ACTGG	2 cut(s)	674, 846
BseSI	GKGCMC	1 cut(s)	943
BseXI	GCAGC	1 cut(s)	560
BsgI	GTGCAG	1 cut(s)	843
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	101
BshNI	GGYRCC	2 cut(s)	8, 938
BshVI	ATCGAT	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	447
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	761
BslFI	GGGAC	3 cut(s)	119, 492, 777
BsmAI	GTCTC	3 cut(s)	221, 546, 896
BsmBI	CGTCTC	1 cut(s)	896
BsmFI	GGGAC	3 cut(s)	119, 492, 777
BsnI	GGCC	1 cut(s)	101
Bso31I	GGTCTC	2 cut(s)	221, 546
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	2 cut(s)	447, 943
Bsp1407I	TGTACA	1 cut(s)	375
BspACI	CCGC	1 cut(s)	914
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	908
BspDI	ATCGAT	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	3 cut(s)	10, 672, 940
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	5 cut(s)	34, 380, 665, 678, 695
BspT107I	GGYRCC	2 cut(s)	8, 938
BspTNI	GGTCTC	2 cut(s)	221, 546
BsrDI	GCAATG	2 cut(s)	198, 756
BsrGI	TGTACA	1 cut(s)	375
BsrI	ACTGG	2 cut(s)	674, 846
Bst4CI	ACNGT	8 cut(s)	8, 142, 380, 394, 556, 794, 808, 907
BstAUI	TGTACA	1 cut(s)	375
BstC8I	GCNNGC	2 cut(s)	251, 443
BstDEI	CTNAG	4 cut(s)	323, 330, 494, 895
BstF5I	GGATG	1 cut(s)	922
BstFNI	CGCG	1 cut(s)	117
BstMAI	GTCTC	3 cut(s)	221, 546, 896
BstMWI	GCNNNNNNNGC	2 cut(s)	303, 830
BstNSI	RCATGY	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	760
BstSFI	CTRYAG	1 cut(s)	546
BstSLI	GKGCMC	1 cut(s)	943
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	560
BstX2I	RGATCY	3 cut(s)	39, 151, 670
BstXI	CCANNNNNNTGG	1 cut(s)	950
BstYI	RGATCY	3 cut(s)	39, 151, 670
Bsu15I	ATCGAT	1 cut(s)	208
BsuI	GTATCC	1 cut(s)	598
BsuRI	GGCC	1 cut(s)	101
BsuTUI	ATCGAT	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	922
BtsI	GCAGTG	1 cut(s)	831
BtsIMutI	CAGTG	3 cut(s)	385, 804, 831
Cac8I	GCNNGC	2 cut(s)	251, 443
CaiI	CAGNNNCTG	1 cut(s)	554
ClaI	ATCGAT	1 cut(s)	208
CseI	GACGC	1 cut(s)	461
Csp6I	GTAC	3 cut(s)	182, 376, 845
CviAII	CATG	3 cut(s)	250, 530, 667
CviQI	GTAC	3 cut(s)	182, 376, 845
DdeI	CTNAG	4 cut(s)	323, 330, 494, 895
EaeI	YGGCCR	1 cut(s)	99
Eco31I	GGTCTC	2 cut(s)	221, 546
Eco57I	CTGAAG	3 cut(s)	726, 765, 887
Eco88I	CYCGRG	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	896
FaeI	CATG	3 cut(s)	253, 533, 670
FalI	AAGNNNNNCTT	2 cut(s)	617, 649
FaqI	GGGAC	3 cut(s)	119, 492, 777
FatI	CATG	3 cut(s)	249, 529, 666
FauNDI	CATATG	1 cut(s)	945
FbaI	TGATCA	3 cut(s)	343, 732, 919
Fnu4HI	GCNGC	1 cut(s)	549
FokI	GGATG	1 cut(s)	929
Fsp4HI	GCNGC	1 cut(s)	549
FspBI	CTAG	4 cut(s)	155, 231, 353, 363
GluI	GCNGC	1 cut(s)	549
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	1 cut(s)	761
HgaI	GACGC	1 cut(s)	461
Hin1II	CATG	3 cut(s)	253, 533, 670
HindIII	AAGCTT	2 cut(s)	491, 875
HinfI	GANTC	5 cut(s)	24, 419, 434, 765, 812
HpaII	CCGG	1 cut(s)	761
HphI	GGTGA	2 cut(s)	670, 941
Hpy166II	GTNNAC	2 cut(s)	816, 932
Hpy188I	TCNGA	6 cut(s)	130, 433, 616, 783, 867, 898
Hpy188III	TCNNGA	6 cut(s)	37, 80, 261, 263, 704, 736
Hpy8I	GTNNAC	2 cut(s)	816, 932
Hpy99I	CGWCG	5 cut(s)	92, 117, 146, 194, 477
HpyAV	CCTTC	1 cut(s)	823
HpyCH4III	ACNGT	8 cut(s)	8, 142, 380, 394, 556, 794, 808, 907
HpyCH4IV	ACGT	3 cut(s)	90, 238, 560
HpyCH4V	TGCA	3 cut(s)	548, 824, 884
HpyF10VI	GCNNNNNNNGC	2 cut(s)	303, 830
HpyF3I	CTNAG	4 cut(s)	323, 330, 494, 895
HpySE526I	ACGT	3 cut(s)	90, 238, 560
Hsp92II	CATG	3 cut(s)	253, 533, 670
Ksp22I	TGATCA	3 cut(s)	343, 732, 919
Lsp1109I	GCAGC	1 cut(s)	560
LweI	GCATC	2 cut(s)	262, 871
MaeI	CTAG	4 cut(s)	155, 231, 353, 363
MaeII	ACGT	3 cut(s)	90, 238, 560
MaeIII	GTNAC	5 cut(s)	337, 358, 394, 556, 676
MboII	GAAGA	3 cut(s)	605, 737, 854
MflI	RGATCY	3 cut(s)	39, 151, 670
MhlI	GDGCHC	2 cut(s)	447, 943
MlsI	TGGCCA	1 cut(s)	101
MluCI	AATT	3 cut(s)	172, 453, 582
MluNI	TGGCCA	1 cut(s)	101
MlyI	GAGTC	3 cut(s)	413, 759, 821
MnlI	CCTC	5 cut(s)	160, 234, 501, 613, 947
Mox20I	TGGCCA	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	101
MseI	TTAA	3 cut(s)	51, 171, 588
MslI	CAYNNNNRTG	1 cut(s)	948
Msp20I	TGGCCA	1 cut(s)	101
MspI	CCGG	1 cut(s)	761
MspR9I	CCNGG	1 cut(s)	762
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	303, 830
NciI	CCSGG	1 cut(s)	762
NdeI	CATATG	1 cut(s)	945
NlaIII	CATG	3 cut(s)	253, 533, 670
NlaIV	GGNNCC	3 cut(s)	10, 672, 940
NmuCI	GTSAC	1 cut(s)	676
NspI	RCATGY	1 cut(s)	253
PaeI	GCATGC	1 cut(s)	253
PaeR7I	CTCGAG	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	24, 434
PkrI	GCNGC	1 cut(s)	550
PleI	GAGTC	3 cut(s)	413, 759, 820
PpsI	GAGTC	3 cut(s)	413, 759, 820
PshBI	ATTAAT	1 cut(s)	588
PspN4I	GGNNCC	3 cut(s)	10, 672, 940
PstI	CTGCAG	1 cut(s)	550
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	3 cut(s)	39, 151, 670
RsaI	GTAC	3 cut(s)	183, 377, 846
RsaNI	GTAC	3 cut(s)	182, 376, 845
RseI	CAYNNNNRTG	1 cut(s)	948
SaqAI	TTAA	3 cut(s)	51, 171, 588
SatI	GCNGC	1 cut(s)	549
SchI	GAGTC	3 cut(s)	413, 759, 821
ScrFI	CCNGG	1 cut(s)	762
SduI	GDGCHC	2 cut(s)	447, 943
SfaNI	GCATC	2 cut(s)	262, 871
SfcI	CTRYAG	1 cut(s)	546
Sfr274I	CTCGAG	1 cut(s)	261
SlaI	CTCGAG	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	948
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
SpeI	ACTAGT	1 cut(s)	362
SphI	GCATGC	1 cut(s)	253
Sse9I	AATT	3 cut(s)	172, 453, 582
SsiI	CCGC	1 cut(s)	914
SspMI	CTAG	4 cut(s)	155, 231, 353, 363
StyD4I	CCNGG	1 cut(s)	760
TaaI	ACNGT	8 cut(s)	8, 142, 380, 394, 556, 794, 808, 907
TaiI	ACGT	3 cut(s)	93, 241, 563
TaqI	TCGA	6 cut(s)	72, 159, 165, 208, 262, 630
TasI	AATT	3 cut(s)	172, 453, 582
TatI	WGTACW	2 cut(s)	181, 375
TfiI	GAWTC	2 cut(s)	24, 434
Tru1I	TTAA	3 cut(s)	51, 171, 588
Tru9I	TTAA	3 cut(s)	51, 171, 588
TscAI	CASTG	3 cut(s)	385, 811, 831
TseFI	GTSAC	1 cut(s)	676
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	4 cut(s)	165, 187, 606, 738
TspGWI	ACGGA	3 cut(s)	32, 101, 878
TspRI	CASTG	3 cut(s)	385, 811, 831
VspI	ATTAAT	1 cut(s)	588
XceI	RCATGY	1 cut(s)	253
XhoI	CTCGAG	1 cut(s)	261
XspI	CTAG	4 cut(s)	155, 231, 353, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.