AT2G15580

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010883
Physical Location & Seq
Forward (+)
6797111 .. 6798939
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G15580.1

Sequence Viewer

Length: 591 bp
ATGGCTGGTATGCTTCCCGGAGTTGAGTGTGCAAGGAGGCGGCGCTTCCACGGTGGTGCTCCTCCGATTGAATCCTCGAACACAGCTTCTGTGGCGGCTGCGGCGGGACACGTCTGGACACGGCGACCATCGTTCTCTCTTTACACTACCAATCATGAGAGCCACCAGGCCCATGTCTCCTTCTCGGAGAGAAGTGTTAGGAATAAATCTTATGGAGAAGACAACGATGAGAAACTTGACGGAGCAGCCAAAGAGGCAAAGCAGAGGCTTAACAAGCGGCTGAGAATCCCACCACGTACAAGGCAAAATGGTAAAGACAAAGGGAATAAATTGGAGCAAGGAAAGGGTAAACCTCTCGGGGACTTACCGACCGAGGTGGTCGGGTTAAAGAAGAGCCGAGGAAGGTTGATGGAATGGTTCAAGCGGCGAGTTAGGGAACAACAAGATTGTGCTATATGTCTAGACCGGTTCAAGAAGGGTGAGACCTTGGTACACCTACCATGTGCCCATAAGTTTCACTCCATATGCTTATTGCCTTGGCTAGACACCAATGTTTATTGCCCATATTGTAGAACTGATATTTGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

196

Amino Acids

22.31

Weight (kDa)

9.81

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 149 - 191 1.1e-13 Ring finger domain
zf-RING_11 PF17123 149 - 177 2.2e-10 RING-like zinc finger
zf-C3HC4_2 PF13923 150 - 190 1.5e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 150 - 190 1.2e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010883)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15580 AT2G15580 AT2G15580
fragaria_vesca FvH4_1g01750
malus_domestica MD02G1013200.v1.1 MD15G1160000.v1.1
pyrus_communis pycom02g01230 pycom15g14390
rosa_chinensis RchiOBHm_Chr2g0086711
rosa_laevigata RLG00000015784
rosa_multiflora Rmu_sc0004626.1_g000003
rosa_roxburghii Rroxscaffold_2G00154270 Rroxscaffold_2G00154520
rosa_rugosa Rorug01G0469000 Rorug01G0469100
rosa_samantha Rh2AG021100 Rh2BG021000 Rh2CG021900 Rh2DG021700
rosa_wichuraiana Rw2G001710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 40, 95, 101, 104, 277, 424
AfaI GTAC 2 cut(s) 298, 492
AflIII ACRYGT 1 cut(s) 109
AgeI ACCGGT 1 cut(s) 465
AgsI TTSAA 3 cut(s) 71, 421, 472
AjiI CACGTC 1 cut(s) 112
AjnI CCWGG 1 cut(s) 165
AjuI GAANNNNNNNTTGG 1 cut(s) 565
AleI CACNNNNGTG 1 cut(s) 54
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
Alw21I GWGCWC 1 cut(s) 61
Alw26I GTCTC 2 cut(s) 181, 476
AlwNI CAGNNNCTG 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 356
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 2 cut(s) 98, 245
AsiGI ACCGGT 1 cut(s) 465
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 169
AsuC2I CCSGG 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 491
AvaI CYCGRG 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 508
BbsI GAAGAC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 61
BbvI GCAGC 2 cut(s) 85, 257
BccI CCATC 2 cut(s) 136, 403
BceAI ACGGC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 167
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 2 cut(s) 181, 476
BfaI CTAG 2 cut(s) 461, 542
BfoI RGCGCY 1 cut(s) 46
BglI GCCNNNNNGGC 1 cut(s) 254
BisI GCNGC 7 cut(s) 41, 96, 99, 102, 246, 278, 425
BlsI GCNGC 7 cut(s) 42, 97, 100, 103, 247, 279, 426
Bme1390I CCNGG 2 cut(s) 18, 167
BmeT110I CYCGRG 1 cut(s) 356
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 169
BmrFI CCNGG 2 cut(s) 18, 167
BpiI GAAGAC 1 cut(s) 225
BpuMI CCSGG 1 cut(s) 18
BsaAI YACGTR 1 cut(s) 296
BsaI GGTCTC 1 cut(s) 476
BsaJI CCNNGG 5 cut(s) 49, 372, 397, 486, 536
BsaWI WCCGGW 1 cut(s) 465
Bse118I RCCGGY 1 cut(s) 465
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 5 cut(s) 49, 372, 397, 486, 536
BseMII CTCAG 1 cut(s) 272
BseRI GAGGAG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 508
BseXI GCAGC 2 cut(s) 85, 257
Bsh1285I CGRYCG 1 cut(s) 372
BshFI GGCC 1 cut(s) 170
BshTI ACCGGT 1 cut(s) 465
BsiEI CGRYCG 1 cut(s) 372
BsiHKAI GWGCWC 1 cut(s) 61
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 2 cut(s) 18, 466
BslFI GGGAC 2 cut(s) 120, 374
BsmAI GTCTC 2 cut(s) 181, 476
BsmFI GGGAC 2 cut(s) 120, 374
BsnI GGCC 1 cut(s) 170
Bso31I GGTCTC 1 cut(s) 476
BsoBI CYCGRG 1 cut(s) 356
Bsp1286I GDGCHC 2 cut(s) 61, 508
BspACI CCGC 6 cut(s) 40, 95, 101, 104, 277, 424
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 273
BspHI TCATGA 1 cut(s) 154
BspQI GCTCTTC 1 cut(s) 386
BspTNI GGTCTC 1 cut(s) 476
BsrFI RCCGGY 1 cut(s) 465
BssAI RCCGGY 1 cut(s) 465
BssECI CCNNGG 5 cut(s) 49, 372, 397, 486, 536
BssT1I CCWWGG 2 cut(s) 486, 536
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 386
BstBAI YACGTR 1 cut(s) 296
BstDEI CTNAG 1 cut(s) 281
BstDSI CCRYGG 1 cut(s) 49
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 1 cut(s) 45
BstMAI GTCTC 2 cut(s) 181, 476
BstMCI CGRYCG 1 cut(s) 372
BstMWI GCNNNNNNNGC 4 cut(s) 92, 101, 254, 274
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 2 cut(s) 16, 165
BstSLI GKGCMC 1 cut(s) 508
BstV1I GCAGC 2 cut(s) 85, 257
BstV2I GAAGAC 1 cut(s) 225
BsuRI GGCC 1 cut(s) 170
BtgI CCRYGG 1 cut(s) 49
BtrI CACGTC 1 cut(s) 112
CaiI CAGNNNCTG 1 cut(s) 89
CciI TCATGA 1 cut(s) 154
CfoI GCGC 1 cut(s) 45
Cfr10I RCCGGY 1 cut(s) 465
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 2 cut(s) 297, 491
CspAI ACCGGT 1 cut(s) 465
CviAII CATG 3 cut(s) 155, 173, 501
CviQI GTAC 2 cut(s) 297, 491
DdeI CTNAG 1 cut(s) 281
Eam1104I CTCTTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 386
Eco130I CCWWGG 2 cut(s) 486, 536
Eco31I GGTCTC 1 cut(s) 476
Eco88I CYCGRG 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 2 cut(s) 486, 536
ErhI CCWWGG 2 cut(s) 486, 536
FaeI CATG 3 cut(s) 158, 176, 504
FaqI GGGAC 2 cut(s) 120, 374
FatI CATG 3 cut(s) 154, 172, 500
FauI CCCGC 1 cut(s) 97
FauNDI CATATG 1 cut(s) 524
Fnu4HI GCNGC 7 cut(s) 41, 96, 99, 102, 246, 278, 425
Fsp4HI GCNGC 7 cut(s) 41, 96, 99, 102, 246, 278, 425
FspBI CTAG 2 cut(s) 461, 542
GlaI GCGC 1 cut(s) 44
GluI GCNGC 7 cut(s) 41, 96, 99, 102, 246, 278, 425
HaeII RGCGCY 1 cut(s) 46
HaeIII GGCC 1 cut(s) 170
HapII CCGG 2 cut(s) 18, 466
HhaI GCGC 1 cut(s) 45
Hin1II CATG 3 cut(s) 158, 176, 504
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HinfI GANTC 2 cut(s) 71, 285
HpaII CCGG 2 cut(s) 18, 466
HphI GGTGA 1 cut(s) 491
Hpy166II GTNNAC 2 cut(s) 350, 493
Hpy188I TCNGA 2 cut(s) 66, 187
Hpy188III TCNNGA 4 cut(s) 115, 155, 461, 472
Hpy8I GTNNAC 2 cut(s) 350, 493
HpyAV CCTTC 3 cut(s) 190, 396, 469
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 2 cut(s) 111, 295
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 101, 254, 274
HpyF3I CTNAG 1 cut(s) 281
HpySE526I ACGT 2 cut(s) 111, 295
Hsp92II CATG 3 cut(s) 158, 176, 504
HspAI GCGC 1 cut(s) 43
LguI GCTCTTC 1 cut(s) 386
LmnI GCTCC 3 cut(s) 64, 242, 334
LpnPI CCDG 5 cut(s) 31, 100, 152, 179, 479
Lsp1109I GCAGC 2 cut(s) 85, 257
MaeI CTAG 2 cut(s) 461, 542
MaeII ACGT 2 cut(s) 111, 295
MboII GAAGA 2 cut(s) 230, 403
MhlI GDGCHC 2 cut(s) 61, 508
MluCI AATT 2 cut(s) 329, 586
MnlI CCTC 8 cut(s) 30, 72, 85, 247, 258, 363, 367, 392
MseI TTAA 3 cut(s) 270, 386, 589
MslI CAYNNNNRTG 1 cut(s) 54
MspI CCGG 2 cut(s) 18, 466
MspR9I CCNGG 2 cut(s) 18, 167
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 4 cut(s) 92, 101, 254, 274
NciI CCSGG 1 cut(s) 18
NdeI CATATG 1 cut(s) 524
NlaIII CATG 3 cut(s) 158, 176, 504
NmeAIII GCCGAG 1 cut(s) 422
OliI CACNNNNGTG 1 cut(s) 54
PagI TCATGA 1 cut(s) 154
PciSI GCTCTTC 1 cut(s) 386
PfeI GAWTC 2 cut(s) 71, 285
PfoI TCCNGGA 1 cut(s) 16
PinAI ACCGGT 1 cut(s) 465
PkrI GCNGC 7 cut(s) 42, 97, 100, 103, 247, 279, 426
Ppu21I YACGTR 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspPI GGNCC 1 cut(s) 169
PstNI CAGNNNCTG 1 cut(s) 89
RsaI GTAC 2 cut(s) 298, 492
RsaNI GTAC 2 cut(s) 297, 491
RseI CAYNNNNRTG 1 cut(s) 54
SapI GCTCTTC 1 cut(s) 386
SaqAI TTAA 3 cut(s) 270, 386, 589
SatI GCNGC 7 cut(s) 41, 96, 99, 102, 246, 278, 425
Sau96I GGNCC 1 cut(s) 169
ScrFI CCNGG 2 cut(s) 18, 167
SduI GDGCHC 2 cut(s) 61, 508
SetI ASST 8 cut(s) 88, 114, 298, 355, 378, 407, 488, 498
SmiMI CAYNNNNRTG 1 cut(s) 54
Sse9I AATT 2 cut(s) 329, 586
SsiI CCGC 6 cut(s) 40, 95, 101, 104, 277, 424
SspMI CTAG 2 cut(s) 461, 542
StyD4I CCNGG 2 cut(s) 16, 165
StyI CCWWGG 2 cut(s) 486, 536
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 2 cut(s) 114, 298
TaqI TCGA 1 cut(s) 77
TaqII GACCGA 1 cut(s) 386
TasI AATT 2 cut(s) 329, 586
TauI GCSGC 5 cut(s) 43, 98, 104, 280, 427
TfiI GAWTC 2 cut(s) 71, 285
Tru1I TTAA 3 cut(s) 270, 386, 589
Tru9I TTAA 3 cut(s) 270, 386, 589
TseI GCWGC 2 cut(s) 98, 245
TspGWI ACGGA 1 cut(s) 255
XbaI TCTAGA 1 cut(s) 460
XspI CTAG 2 cut(s) 461, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.