Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010883

Physical Location & Seq

Genomic Coordinates Forward (+)

842184 .. 844393

Gene Structure 2210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1013200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCTGGAATGCTTCCTGGTGTGGAATGCGCTCGGAGGAGACGAGTCCATCAGAGCGGAGAGTCACCGTGCGTCGGCGGCATCCATGGCAGCACCAGGCGCTCTTCTTTCTGTTTGTATGCTAGCAACCATGAATCTCACCACACCTCCACCTCTTCACTGCAAAGAAGCATACTGAACCAAGCATACATGGATGAGAAGCTGGGAGTGGAAGCCAGAGAAGCCAAGGGGAGATTAGATGAAAGACTGAGAACACAAAGAAAACCACAACCCAAAAGGCATACTAATGGTGGTAACAAGGGACTGAAATGTGTGGATGGAGGAGGAAGATCATCTGTCTTGCTTGGGGAGTTGCAGAAAGAAGTTTACGGAGCAAACAAGAGTAGTAGTAGTACAAGTGGGTCAAAGAAGTTCAGCTGGTCAAAGCTGACCTGGAAGTCATCGGACCAGGATGAGTGTGCAGTCTGCCTGGAGAGGCTCAGGCCAGGTGAGACCCTGGTGCACCTGCCCTGTGCCCATAGGTTCCACTCTGGTTGCATGGTTCCATGGCTTCACAACAATGCCCATTGCCCCTGTTGCAGAATGGAGATTATCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

200

Amino Acids

22.03

Weight (kDa)

9.41

Isoelectric Point (pI)

63.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	151 - 194	2.2e-11	Ring finger domain
zf-RING_11	PF17123	152 - 179	6e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	152 - 193	2.3e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15580 AT2G15580 AT2G15580
fragaria_vesca	FvH4_1g01750
malus_domestica	MD02G1013200.v1.1 MD15G1160000.v1.1
pyrus_communis	pycom02g01230 pycom15g14390
rosa_chinensis	RchiOBHm_Chr2g0086711
rosa_laevigata	RLG00000015784
rosa_multiflora	Rmu_sc0004626.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154270 Rroxscaffold_2G00154520
rosa_rugosa	Rorug01G0469000 Rorug01G0469100
rosa_samantha	Rh2AG021100 Rh2BG021000 Rh2CG021900 Rh2DG021700
rosa_wichuraiana	Rw2G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	513
AasI	GACNNNNNNGTC	1 cut(s)	436
Acc36I	ACCTGC	1 cut(s)	513
AccBSI	CCGCTC	1 cut(s)	57
AciI	CCGC	2 cut(s)	57, 78
AfaI	GTAC	1 cut(s)	394
AfiI	CCNNNNNNNGG	1 cut(s)	74
AjnI	CCWGG	7 cut(s)	16, 95, 431, 447, 468, 484, 495
AluBI	AGCT	3 cut(s)	202, 417, 427
AluI	AGCT	3 cut(s)	202, 417, 427
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	2 cut(s)	34, 485
Alw44I	GTGCAC	1 cut(s)	500
AoxI	GGCC	1 cut(s)	482
ApaLI	GTGCAC	1 cut(s)	500
ApeKI	GCWGC	1 cut(s)	90
AspLEI	GCGC	2 cut(s)	32, 102
AspS9I	GGNCC	1 cut(s)	445
AsuHPI	GGTGA	3 cut(s)	57, 131, 500
AsuNHI	GCTAGC	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	445
BaeGI	GKGCMC	2 cut(s)	504, 517
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	2 cut(s)	57, 311
BciT130I	CCWGG	7 cut(s)	18, 97, 433, 449, 470, 486, 497
BcoDI	GTCTC	2 cut(s)	34, 485
BfaI	CTAG	2 cut(s)	123, 598
BfoI	RGCGCY	1 cut(s)	103
BfuAI	ACCTGC	1 cut(s)	513
BisI	GCNGC	2 cut(s)	79, 91
BlsI	GCNGC	2 cut(s)	80, 92
Bme1390I	CCNGG	7 cut(s)	18, 97, 433, 449, 470, 486, 497
Bme18I	GGWCC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	2 cut(s)	524, 543
BmrFI	CCNGG	7 cut(s)	18, 97, 433, 449, 470, 486, 497
BmsI	GCATC	1 cut(s)	90
BmtI	GCTAGC	1 cut(s)	126
BplI	GAGNNNNNCTC	1 cut(s)	578
BpmI	CTGGAG	1 cut(s)	491
Bpu10I	CCTNAGC	1 cut(s)	479
BsaI	GGTCTC	1 cut(s)	485
BsaJI	CCNNGG	4 cut(s)	85, 225, 495, 545
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	565
BseBI	CCWGG	7 cut(s)	18, 97, 433, 449, 470, 486, 497
BseDI	CCNNGG	4 cut(s)	85, 225, 495, 545
BseGI	GGATG	4 cut(s)	81, 199, 322, 457
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	565
BseMII	CTCAG	2 cut(s)	239, 493
BseRI	GAGGAG	2 cut(s)	52, 336
BseSI	GKGCMC	2 cut(s)	504, 517
BseXI	GCAGC	1 cut(s)	102
BseYI	CCCAGC	1 cut(s)	202
BsgI	GTGCAG	1 cut(s)	480
BshFI	GGCC	1 cut(s)	484
BsiHKAI	GWGCWC	1 cut(s)	504
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	2 cut(s)	34, 485
BsmBI	CGTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	315
BsmI	GAATGC	2 cut(s)	15, 32
BsnI	GGCC	1 cut(s)	484
Bso31I	GGTCTC	1 cut(s)	485
Bsp1286I	GDGCHC	2 cut(s)	504, 517
Bsp143I	GATC	1 cut(s)	329
Bsp19I	CCATGG	2 cut(s)	85, 545
BspACI	CCGC	2 cut(s)	57, 78
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	2 cut(s)	240, 492
BspLI	GGNNCC	2 cut(s)	524, 543
BspMI	ACCTGC	1 cut(s)	513
BspOI	GCTAGC	1 cut(s)	126
BspQI	GCTCTTC	1 cut(s)	109
BspTNI	GGTCTC	1 cut(s)	485
BsrBI	CCGCTC	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	565
BssECI	CCNNGG	4 cut(s)	85, 225, 495, 545
BssMI	GATC	1 cut(s)	329
BssT1I	CCWWGG	3 cut(s)	85, 225, 545
Bst2UI	CCWGG	7 cut(s)	18, 97, 433, 449, 470, 486, 497
Bst4CI	ACNGT	1 cut(s)	69
Bst6I	CTCTTC	2 cut(s)	109, 160
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	2 cut(s)	248, 479
BstDSI	CCRYGG	2 cut(s)	85, 545
BstF5I	GGATG	4 cut(s)	81, 199, 322, 457
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	2 cut(s)	32, 102
BstKTI	GATC	1 cut(s)	332
BstMAI	GTCTC	2 cut(s)	34, 485
BstMBI	GATC	1 cut(s)	329
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 87, 99, 221, 576
BstNI	CCWGG	7 cut(s)	18, 97, 433, 449, 470, 486, 497
BstSCI	CCNGG	7 cut(s)	16, 95, 431, 447, 468, 484, 495
BstSLI	GKGCMC	2 cut(s)	504, 517
BstV1I	GCAGC	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	484
BtgI	CCRYGG	2 cut(s)	85, 545
BtsCI	GGATG	4 cut(s)	81, 199, 322, 457
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	158
BveI	ACCTGC	1 cut(s)	513
Cac8I	GCNNGC	1 cut(s)	124
CfoI	GCGC	2 cut(s)	32, 102
Cfr13I	GGNCC	1 cut(s)	445
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	393
CspCI	CAANNNNNGTGG	2 cut(s)	515, 550
CviAII	CATG	5 cut(s)	86, 131, 190, 538, 546
CviJI	RGCY	9 cut(s)	5, 202, 215, 224, 417, 427, 478, 484, 550
CviKI_1	RGCY	9 cut(s)	5, 202, 215, 224, 417, 427, 478, 484, 550
CviQI	GTAC	1 cut(s)	393
DdeI	CTNAG	2 cut(s)	248, 479
DpnI	GATC	1 cut(s)	331
DpnII	GATC	1 cut(s)	329
DrdI	GACNNNNNNGTC	1 cut(s)	436
DseDI	GACNNNNNNGTC	1 cut(s)	436
Eam1104I	CTCTTC	2 cut(s)	109, 160
EarI	CTCTTC	2 cut(s)	109, 160
Eco130I	CCWWGG	3 cut(s)	85, 225, 545
Eco31I	GGTCTC	1 cut(s)	485
Eco47I	GGWCC	1 cut(s)	445
EcoRII	CCWGG	7 cut(s)	16, 95, 431, 447, 468, 484, 495
EcoT14I	CCWWGG	3 cut(s)	85, 225, 545
ErhI	CCWWGG	3 cut(s)	85, 225, 545
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	5 cut(s)	89, 134, 193, 541, 549
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	5 cut(s)	85, 130, 189, 537, 545
Fnu4HI	GCNGC	2 cut(s)	79, 91
FokI	GGATG	4 cut(s)	68, 206, 329, 464
Fsp4HI	GCNGC	2 cut(s)	79, 91
FspBI	CTAG	2 cut(s)	123, 598
GlaI	GCGC	2 cut(s)	31, 101
GluI	GCNGC	2 cut(s)	79, 91
GsaI	CCCAGC	1 cut(s)	206
GsuI	CTGGAG	1 cut(s)	491
HaeII	RGCGCY	1 cut(s)	103
HaeIII	GGCC	1 cut(s)	484
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	2 cut(s)	32, 102
Hin1II	CATG	5 cut(s)	89, 134, 193, 541, 549
Hin6I	GCGC	2 cut(s)	30, 100
HinP1I	GCGC	2 cut(s)	30, 100
HinfI	GANTC	3 cut(s)	45, 62, 134
HphI	GGTGA	3 cut(s)	57, 131, 500
Hpy166II	GTNNAC	2 cut(s)	367, 502
Hpy188I	TCNGA	3 cut(s)	36, 54, 445
Hpy8I	GTNNAC	2 cut(s)	367, 502
Hpy99I	CGWCG	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4V	TGCA	6 cut(s)	163, 355, 461, 502, 537, 579
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 87, 99, 221, 576
HpyF3I	CTNAG	2 cut(s)	248, 479
Hsp92II	CATG	5 cut(s)	89, 134, 193, 541, 549
HspAI	GCGC	2 cut(s)	30, 100
Kzo9I	GATC	1 cut(s)	329
LguI	GCTCTTC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	371
Lsp1109I	GCAGC	1 cut(s)	102
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	2 cut(s)	123, 598
MaeIII	GTNAC	2 cut(s)	63, 293
MalI	GATC	1 cut(s)	331
MbiI	CCGCTC	1 cut(s)	57
MboI	GATC	1 cut(s)	329
MboII	GAAGA	3 cut(s)	96, 147, 339
MhlI	GDGCHC	2 cut(s)	504, 517
MlyI	GAGTC	2 cut(s)	54, 71
MnlI	CCTC	6 cut(s)	30, 157, 163, 314, 317, 468
MslI	CAYNNNNRTG	2 cut(s)	285, 558
MspA1I	CMGCKG	1 cut(s)	417
MspR9I	CCNGG	7 cut(s)	18, 97, 433, 449, 470, 486, 497
Mva1269I	GAATGC	2 cut(s)	15, 32
MvaI	CCWGG	7 cut(s)	18, 97, 433, 449, 470, 486, 497
MwoI	GCNNNNNNNGC	5 cut(s)	78, 87, 99, 221, 576
NcoI	CCATGG	2 cut(s)	85, 545
NdeII	GATC	1 cut(s)	329
NheI	GCTAGC	1 cut(s)	122
NlaIII	CATG	5 cut(s)	89, 134, 193, 541, 549
NlaIV	GGNNCC	2 cut(s)	524, 543
NmuCI	GTSAC	1 cut(s)	63
PaqCI	CACCTGC	1 cut(s)	513
PciSI	GCTCTTC	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PctI	GAATGC	2 cut(s)	15, 32
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	80, 92
PleI	GAGTC	2 cut(s)	53, 70
PpsI	GAGTC	2 cut(s)	53, 70
Psp6I	CCWGG	7 cut(s)	16, 95, 431, 447, 468, 484, 495
PspFI	CCCAGC	1 cut(s)	202
PspGI	CCWGG	7 cut(s)	16, 95, 431, 447, 468, 484, 495
PspN4I	GGNNCC	2 cut(s)	524, 543
PspPI	GGNCC	1 cut(s)	445
PsrI	GAACNNNNNNTAC	2 cut(s)	170, 202
PvuII	CAGCTG	1 cut(s)	417
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
RseI	CAYNNNNRTG	2 cut(s)	285, 558
SapI	GCTCTTC	1 cut(s)	109
SatI	GCNGC	2 cut(s)	79, 91
Sau3AI	GATC	1 cut(s)	329
Sau96I	GGNCC	1 cut(s)	445
SchI	GAGTC	2 cut(s)	54, 71
ScrFI	CCNGG	7 cut(s)	18, 97, 433, 449, 470, 486, 497
SduI	GDGCHC	2 cut(s)	504, 517
SetI	ASST	9 cut(s)	149, 155, 204, 419, 429, 434, 490, 507, 524
SfaNI	GCATC	1 cut(s)	90
SinI	GGWCC	1 cut(s)	445
SmiMI	CAYNNNNRTG	2 cut(s)	285, 558
SsiI	CCGC	2 cut(s)	57, 78
SspMI	CTAG	2 cut(s)	123, 598
StyD4I	CCNGG	7 cut(s)	16, 95, 431, 447, 468, 484, 495
StyI	CCWWGG	3 cut(s)	85, 225, 545
TaaI	ACNGT	1 cut(s)	69
TatI	WGTACW	1 cut(s)	392
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	134
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	63
TseI	GCWGC	1 cut(s)	90
Tsp45I	GTSAC	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	147, 255
TspGWI	ACGGA	1 cut(s)	384
TspRI	CASTG	1 cut(s)	165
VneI	GTGCAC	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	445
XspI	CTAG	2 cut(s)	123, 598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.