Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010883

Physical Location & Seq

Genomic Coordinates Forward (+)

1713950 .. 1715954

Gene Structure 2005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG021900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTTGAACCAGGCGTCATACATGGATGAGAAGCTAGGAGAGGAAGCCAGAGTTGCCAAAGAGAGATTAGATGAAAGATTGAGAACACAAAGAAAATCACAACCCAAAAGGCTAATTAGCAAAGAAGGATCACTGAGTAGTGTGGATGATGCAAGATCTACCATGATTCTGAGGGAGTTGCAGAGAGAAGTGTATGGATCAAAGAAGACTACTAGGACTGGGTCAAGAAAGTTCAGCTGGGCCAAGTTCAGCTGGAAGTCATCTGACCAAGATGAGTGCGCTGTTTGCCTTGAGAGGTTCAGGCCTGGTGAGACTCTGGTGCATCTGCCTTGCGCACATAGGTTCCATTCTGAGTGTATGGTCCCATGGCTAGAGAACAATGCTCATTGCCCTTGTTGTAGAATGGGGATAGCTATAGTGTCCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

142

Amino Acids

16.41

Weight (kDa)

9.06

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	91 - 134	7.6e-13	Ring finger domain
zf-RING_11	PF17123	92 - 119	1e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	92 - 133	1.4e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	93 - 133	4.9e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15580 AT2G15580 AT2G15580
fragaria_vesca	FvH4_1g01750
malus_domestica	MD02G1013200.v1.1 MD15G1160000.v1.1
pyrus_communis	pycom02g01230 pycom15g14390
rosa_chinensis	RchiOBHm_Chr2g0086711
rosa_laevigata	RLG00000015784
rosa_multiflora	Rmu_sc0004626.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154270 Rroxscaffold_2G00154520
rosa_rugosa	Rorug01G0469000 Rorug01G0469100
rosa_samantha	Rh2AG021100 Rh2BG021000 Rh2CG021900 Rh2DG021700
rosa_wichuraiana	Rw2G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	334
AclWI	GGATC	2 cut(s)	136, 205
AcyI	GRCGYC	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	7
AjnI	CCWGG	2 cut(s)	9, 304
AluBI	AGCT	4 cut(s)	34, 237, 252, 413
AluI	AGCT	4 cut(s)	34, 237, 252, 413
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	2 cut(s)	136, 205
AoxI	GGCC	2 cut(s)	240, 302
AspLEI	GCGC	2 cut(s)	281, 335
AspS9I	GGNCC	2 cut(s)	240, 361
AsuHPI	GGTGA	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	212
BciT130I	CCWGG	2 cut(s)	11, 306
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	3 cut(s)	35, 213, 371
BfmI	CTRYAG	1 cut(s)	414
BglII	AGATCT	1 cut(s)	155
Bme1390I	CCNGG	2 cut(s)	11, 306
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	2 cut(s)	240, 361
BmiI	GGNNCC	2 cut(s)	344, 363
BmrFI	CCNGG	2 cut(s)	11, 306
BmrI	ACTGGG	2 cut(s)	228, 418
BmsI	GCATC	2 cut(s)	139, 331
BmuI	ACTGGG	2 cut(s)	228, 418
BpiI	GAAGAC	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	311
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	365
Bse1I	ACTGG	2 cut(s)	223, 424
Bse3DI	GCAATG	1 cut(s)	385
BseBI	CCWGG	2 cut(s)	11, 306
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	2 cut(s)	31, 151
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	3 cut(s)	125, 161, 342
BseNI	ACTGG	2 cut(s)	223, 424
BseYI	CCCAGC	1 cut(s)	237
BshFI	GGCC	2 cut(s)	242, 304
BslFI	GGGAC	2 cut(s)	347, 406
BsmAI	GTCTC	1 cut(s)	305
BsmFI	GGGAC	2 cut(s)	347, 406
BsnI	GGCC	2 cut(s)	242, 304
Bsp143I	GATC	3 cut(s)	128, 155, 197
Bsp19I	CCATGG	1 cut(s)	365
BspANI	GGCC	2 cut(s)	242, 304
BspCNI	CTCAG	3 cut(s)	126, 162, 343
BspLI	GGNNCC	2 cut(s)	344, 363
BspPI	GGATC	2 cut(s)	136, 205
BsrDI	GCAATG	1 cut(s)	385
BsrI	ACTGG	2 cut(s)	223, 424
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	3 cut(s)	128, 155, 197
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	365
Bst2UI	CCWGG	2 cut(s)	11, 306
BstACI	GRCGYC	1 cut(s)	14
BstDEI	CTNAG	3 cut(s)	134, 170, 351
BstDSI	CCRYGG	1 cut(s)	365
BstF5I	GGATG	2 cut(s)	31, 151
BstHHI	GCGC	2 cut(s)	281, 335
BstKTI	GATC	3 cut(s)	131, 158, 200
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	3 cut(s)	128, 155, 197
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 285
BstNI	CCWGG	2 cut(s)	11, 306
BstSCI	CCNGG	2 cut(s)	9, 304
BstSFI	CTRYAG	1 cut(s)	414
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BsuRI	GGCC	2 cut(s)	242, 304
BtgI	CCRYGG	1 cut(s)	365
BtsCI	GGATG	2 cut(s)	31, 151
BtsIMutI	CAGTG	1 cut(s)	131
CfoI	GCGC	2 cut(s)	281, 335
Cfr13I	GGNCC	2 cut(s)	240, 361
CseI	GACGC	1 cut(s)	3
CviAII	CATG	3 cut(s)	22, 163, 366
CviJI	RGCY	9 cut(s)	34, 47, 112, 237, 242, 252, 304, 370, 413
CviKI_1	RGCY	9 cut(s)	34, 47, 112, 237, 242, 252, 304, 370, 413
DdeI	CTNAG	3 cut(s)	134, 170, 351
DpnI	GATC	3 cut(s)	130, 157, 199
DpnII	GATC	3 cut(s)	128, 155, 197
Eco130I	CCWWGG	1 cut(s)	365
Eco147I	AGGCCT	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	361
EcoRII	CCWGG	2 cut(s)	9, 304
EcoT14I	CCWWGG	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	3 cut(s)	25, 166, 369
FaiI	YATR	8 cut(s)	19, 23, 164, 195, 339, 359, 367, 416
FaqI	GGGAC	2 cut(s)	347, 406
FatI	CATG	3 cut(s)	21, 162, 365
FokI	GGATG	2 cut(s)	38, 158
FspBI	CTAG	3 cut(s)	35, 213, 371
FspI	TGCGCA	1 cut(s)	334
GlaI	GCGC	2 cut(s)	280, 334
GsaI	CCCAGC	1 cut(s)	241
HaeIII	GGCC	2 cut(s)	242, 304
HgaI	GACGC	1 cut(s)	3
HhaI	GCGC	2 cut(s)	281, 335
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	3 cut(s)	25, 166, 369
Hin6I	GCGC	2 cut(s)	279, 333
HinP1I	GCGC	2 cut(s)	279, 333
HinfI	GANTC	2 cut(s)	166, 313
HphI	GGTGA	1 cut(s)	320
Hpy188I	TCNGA	3 cut(s)	171, 265, 352
Hpy188III	TCNNGA	1 cut(s)	225
HpyAV	CCTTC	1 cut(s)	119
HpyCH4V	TGCA	3 cut(s)	152, 181, 322
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 285
HpyF3I	CTNAG	3 cut(s)	134, 170, 351
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	25, 166, 369
HspAI	GCGC	2 cut(s)	279, 333
Kzo9I	GATC	3 cut(s)	128, 155, 197
LpnPI	CCDG	9 cut(s)	23, 61, 204, 223, 238, 286, 291, 302, 318
LweI	GCATC	2 cut(s)	139, 331
MaeI	CTAG	3 cut(s)	35, 213, 371
MalI	GATC	3 cut(s)	130, 157, 199
MboI	GATC	3 cut(s)	128, 155, 197
MboII	GAAGA	1 cut(s)	217
MflI	RGATCY	1 cut(s)	155
MluCI	AATT	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	307
MnlI	CCTC	3 cut(s)	34, 165, 288
MspA1I	CMGCKG	2 cut(s)	237, 252
MspR9I	CCNGG	2 cut(s)	11, 306
MvaI	CCWGG	2 cut(s)	11, 306
MwoI	GCNNNNNNNGC	2 cut(s)	53, 285
NcoI	CCATGG	1 cut(s)	365
NdeII	GATC	3 cut(s)	128, 155, 197
NlaIII	CATG	3 cut(s)	25, 166, 369
NlaIV	GGNNCC	2 cut(s)	344, 363
NsbI	TGCGCA	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	166
PflFI	GACNNNGTC	1 cut(s)	220
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Psp6I	CCWGG	2 cut(s)	9, 304
PspFI	CCCAGC	1 cut(s)	237
PspGI	CCWGG	2 cut(s)	9, 304
PspN4I	GGNNCC	2 cut(s)	344, 363
PspPI	GGNCC	2 cut(s)	240, 361
PsuI	RGATCY	1 cut(s)	155
PsyI	GACNNNGTC	1 cut(s)	220
PvuII	CAGCTG	2 cut(s)	237, 252
Sau3AI	GATC	3 cut(s)	128, 155, 197
Sau96I	GGNCC	2 cut(s)	240, 361
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	2 cut(s)	11, 306
SetI	ASST	6 cut(s)	36, 239, 254, 299, 344, 415
SfaNI	GCATC	2 cut(s)	139, 331
SfcI	CTRYAG	1 cut(s)	414
SinI	GGWCC	1 cut(s)	361
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	1 cut(s)	114
SseBI	AGGCCT	1 cut(s)	304
SspMI	CTAG	3 cut(s)	35, 213, 371
StuI	AGGCCT	1 cut(s)	304
StyD4I	CCNGG	2 cut(s)	9, 304
StyI	CCWWGG	1 cut(s)	365
TasI	AATT	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	166
TscAI	CASTG	1 cut(s)	138
TspDTI	ATGAA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	138
Tth111I	GACNNNGTC	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	361
XspI	CTAG	3 cut(s)	35, 213, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.