Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010883

Physical Location & Seq

Genomic Coordinates Forward (+)

701447 .. 702616

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCTGGAATGCTTCCTGGTGTGGAATGCGCTCGGAGGAGACGAGTCCATCAGAGCGGAGAGTCACCGTGTGTCGGCGGCATCCATGGCAGCACCAGGCGGTCTTCTTTCTGTTTGTATGCTAGCAACCATGATTCTCACCACACCTCCACCTCTTCACTGCAAAGAAGCATACTGAACCAAGCATACATGGATGAGAAGCTGGGAGTGGAAGCCAGAGAAGCCAAGGGGAGATTAGATGAAAGACTGAGAACACAAAGAAAACCACAACCCAAAAGGCATACTAATGGTGGTAACAAGGGACTGAAATGTGTGGATGGAGGAGGAAGATCATCTGTGGTGCTTGGGGAGTTGCAGAAAGAAGTTTACGGAGCAAACAAGAGTAGTAGTAGTAGTACAAGTGGGTCAAAGAAGTTCAGCTGGTCAAAGCTGACCTGGAAGTCATCGGACCAGGATGAATGTGCAGTCTGCCTGGAGAGGCTCAGGCCAGGTGAGGCCCTGGTGCACCTGCCCTGTGCCCATAGGTTCCACTCTGGTTGCATGGTTCCATGGCTTCACAACAATGCCCATTGCCCCTGTTGCAGAACGGAGATTATCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

201

Amino Acids

22.03

Weight (kDa)

9.41

Isoelectric Point (pI)

65.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	152 - 195	2.6e-11	Ring finger domain
zf-RING_11	PF17123	153 - 180	3.8e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	153 - 194	2.5e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15580 AT2G15580 AT2G15580
fragaria_vesca	FvH4_1g01750
malus_domestica	MD02G1013200.v1.1 MD15G1160000.v1.1
pyrus_communis	pycom02g01230 pycom15g14390
rosa_chinensis	RchiOBHm_Chr2g0086711
rosa_laevigata	RLG00000015784
rosa_multiflora	Rmu_sc0004626.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154270 Rroxscaffold_2G00154520
rosa_rugosa	Rorug01G0469000 Rorug01G0469100
rosa_samantha	Rh2AG021100 Rh2BG021000 Rh2CG021900 Rh2DG021700
rosa_wichuraiana	Rw2G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	516
AasI	GACNNNNNNGTC	1 cut(s)	439
Acc36I	ACCTGC	1 cut(s)	516
AccBSI	CCGCTC	1 cut(s)	57
AciI	CCGC	3 cut(s)	57, 78, 100
AdeI	CACNNNGTG	1 cut(s)	71
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	1 cut(s)	74
AjnI	CCWGG	7 cut(s)	16, 95, 434, 450, 471, 487, 498
AluBI	AGCT	3 cut(s)	202, 420, 430
AluI	AGCT	3 cut(s)	202, 420, 430
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	1 cut(s)	34
Alw44I	GTGCAC	1 cut(s)	503
AoxI	GGCC	2 cut(s)	485, 495
ApaLI	GTGCAC	1 cut(s)	503
ApeKI	GCWGC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	2 cut(s)	448, 496
AsuHPI	GGTGA	3 cut(s)	57, 131, 503
AsuNHI	GCTAGC	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	448
BaeGI	GKGCMC	2 cut(s)	507, 520
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	507
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	2 cut(s)	57, 311
BciT130I	CCWGG	7 cut(s)	18, 97, 436, 452, 473, 489, 500
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	2 cut(s)	123, 601
BfuAI	ACCTGC	1 cut(s)	516
BisI	GCNGC	2 cut(s)	79, 91
BlsI	GCNGC	2 cut(s)	80, 92
Bme1390I	CCNGG	7 cut(s)	18, 97, 436, 452, 473, 489, 500
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	2 cut(s)	448, 496
BmiI	GGNNCC	2 cut(s)	527, 546
BmrFI	CCNGG	7 cut(s)	18, 97, 436, 452, 473, 489, 500
BmsI	GCATC	1 cut(s)	90
BmtI	GCTAGC	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	96
BplI	GAGNNNNNCTC	1 cut(s)	581
BpmI	CTGGAG	1 cut(s)	494
Bpu10I	CCTNAGC	1 cut(s)	482
BsaJI	CCNNGG	4 cut(s)	85, 225, 498, 548
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	568
BseBI	CCWGG	7 cut(s)	18, 97, 436, 452, 473, 489, 500
BseDI	CCNNGG	4 cut(s)	85, 225, 498, 548
BseGI	GGATG	4 cut(s)	81, 199, 322, 460
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	2 cut(s)	239, 496
BseRI	GAGGAG	2 cut(s)	52, 336
BseSI	GKGCMC	2 cut(s)	507, 520
BseXI	GCAGC	1 cut(s)	102
BseYI	CCCAGC	1 cut(s)	202
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	2 cut(s)	487, 497
BsiHKAI	GWGCWC	1 cut(s)	507
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	34
BsmBI	CGTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	315
BsmI	GAATGC	2 cut(s)	15, 32
BsnI	GGCC	2 cut(s)	487, 497
Bsp1286I	GDGCHC	2 cut(s)	507, 520
Bsp143I	GATC	1 cut(s)	329
Bsp19I	CCATGG	2 cut(s)	85, 548
BspACI	CCGC	3 cut(s)	57, 78, 100
BspANI	GGCC	2 cut(s)	487, 497
BspCNI	CTCAG	2 cut(s)	240, 495
BspLI	GGNNCC	2 cut(s)	527, 546
BspMI	ACCTGC	1 cut(s)	516
BspOI	GCTAGC	1 cut(s)	126
BsrBI	CCGCTC	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	568
BssECI	CCNNGG	4 cut(s)	85, 225, 498, 548
BssMI	GATC	1 cut(s)	329
BssT1I	CCWWGG	3 cut(s)	85, 225, 548
Bst2UI	CCWGG	7 cut(s)	18, 97, 436, 452, 473, 489, 500
Bst4CI	ACNGT	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	2 cut(s)	248, 482
BstDSI	CCRYGG	2 cut(s)	85, 548
BstF5I	GGATG	4 cut(s)	81, 199, 322, 460
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	1 cut(s)	332
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	329
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 221, 579
BstNI	CCWGG	7 cut(s)	18, 97, 436, 452, 473, 489, 500
BstSCI	CCNGG	7 cut(s)	16, 95, 434, 450, 471, 487, 498
BstSLI	GKGCMC	2 cut(s)	507, 520
BstV1I	GCAGC	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	487, 497
BtgI	CCRYGG	2 cut(s)	85, 548
BtsCI	GGATG	4 cut(s)	81, 199, 322, 460
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	158
BveI	ACCTGC	1 cut(s)	516
Cac8I	GCNNGC	1 cut(s)	124
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	2 cut(s)	448, 496
Csp6I	GTAC	1 cut(s)	396
CspCI	CAANNNNNGTGG	2 cut(s)	518, 553
CviAII	CATG	5 cut(s)	86, 131, 190, 541, 549
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	2 cut(s)	248, 482
DpnI	GATC	1 cut(s)	331
DpnII	GATC	1 cut(s)	329
DraIII	CACNNNGTG	1 cut(s)	71
DrdI	GACNNNNNNGTC	1 cut(s)	439
DseDI	GACNNNNNNGTC	1 cut(s)	439
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Eco130I	CCWWGG	3 cut(s)	85, 225, 548
Eco47I	GGWCC	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	496
EcoRII	CCWGG	7 cut(s)	16, 95, 434, 450, 471, 487, 498
EcoT14I	CCWWGG	3 cut(s)	85, 225, 548
ErhI	CCWWGG	3 cut(s)	85, 225, 548
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	5 cut(s)	89, 134, 193, 544, 552
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	5 cut(s)	85, 130, 189, 540, 548
Fnu4HI	GCNGC	2 cut(s)	79, 91
FokI	GGATG	4 cut(s)	68, 206, 329, 467
Fsp4HI	GCNGC	2 cut(s)	79, 91
FspBI	CTAG	2 cut(s)	123, 601
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	2 cut(s)	79, 91
GsaI	CCCAGC	1 cut(s)	206
GsuI	CTGGAG	1 cut(s)	494
HaeIII	GGCC	2 cut(s)	487, 497
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	5 cut(s)	89, 134, 193, 544, 552
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	3 cut(s)	45, 62, 134
HphI	GGTGA	3 cut(s)	57, 131, 503
Hpy166II	GTNNAC	2 cut(s)	367, 505
Hpy188I	TCNGA	3 cut(s)	36, 54, 448
Hpy8I	GTNNAC	2 cut(s)	367, 505
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4V	TGCA	6 cut(s)	163, 355, 464, 505, 540, 582
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 221, 579
HpyF3I	CTNAG	2 cut(s)	248, 482
Hsp92II	CATG	5 cut(s)	89, 134, 193, 544, 552
HspAI	GCGC	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	329
LmnI	GCTCC	1 cut(s)	371
Lsp1109I	GCAGC	1 cut(s)	102
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	2 cut(s)	123, 601
MaeIII	GTNAC	2 cut(s)	63, 293
MalI	GATC	1 cut(s)	331
MbiI	CCGCTC	1 cut(s)	57
MboI	GATC	1 cut(s)	329
MboII	GAAGA	3 cut(s)	96, 147, 339
MhlI	GDGCHC	2 cut(s)	507, 520
MlyI	GAGTC	2 cut(s)	54, 71
MnlI	CCTC	7 cut(s)	30, 157, 163, 314, 317, 471, 487
MslI	CAYNNNNRTG	2 cut(s)	285, 561
MspA1I	CMGCKG	1 cut(s)	420
MspR9I	CCNGG	7 cut(s)	18, 97, 436, 452, 473, 489, 500
Mva1269I	GAATGC	2 cut(s)	15, 32
MvaI	CCWGG	7 cut(s)	18, 97, 436, 452, 473, 489, 500
MwoI	GCNNNNNNNGC	3 cut(s)	87, 221, 579
NcoI	CCATGG	2 cut(s)	85, 548
NdeII	GATC	1 cut(s)	329
NheI	GCTAGC	1 cut(s)	122
NlaIII	CATG	5 cut(s)	89, 134, 193, 544, 552
NlaIV	GGNNCC	2 cut(s)	527, 546
NmuCI	GTSAC	1 cut(s)	63
PaqCI	CACCTGC	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PctI	GAATGC	2 cut(s)	15, 32
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	80, 92
PleI	GAGTC	2 cut(s)	53, 70
PpsI	GAGTC	2 cut(s)	53, 70
Psp6I	CCWGG	7 cut(s)	16, 95, 434, 450, 471, 487, 498
PspFI	CCCAGC	1 cut(s)	202
PspGI	CCWGG	7 cut(s)	16, 95, 434, 450, 471, 487, 498
PspN4I	GGNNCC	2 cut(s)	527, 546
PspPI	GGNCC	2 cut(s)	448, 496
PsrI	GAACNNNNNNTAC	2 cut(s)	170, 202
PvuII	CAGCTG	1 cut(s)	420
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
RseI	CAYNNNNRTG	2 cut(s)	285, 561
SatI	GCNGC	2 cut(s)	79, 91
Sau3AI	GATC	1 cut(s)	329
Sau96I	GGNCC	2 cut(s)	448, 496
SchI	GAGTC	2 cut(s)	54, 71
ScrFI	CCNGG	7 cut(s)	18, 97, 436, 452, 473, 489, 500
SduI	GDGCHC	2 cut(s)	507, 520
SetI	ASST	9 cut(s)	149, 155, 204, 422, 432, 437, 493, 510, 527
SfaNI	GCATC	1 cut(s)	90
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	2 cut(s)	285, 561
SsiI	CCGC	3 cut(s)	57, 78, 100
SspMI	CTAG	2 cut(s)	123, 601
StyD4I	CCNGG	7 cut(s)	16, 95, 434, 450, 471, 487, 498
StyI	CCWWGG	3 cut(s)	85, 225, 548
TaaI	ACNGT	1 cut(s)	69
TatI	WGTACW	1 cut(s)	395
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	134
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	63
TseI	GCWGC	1 cut(s)	90
Tsp45I	GTSAC	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	255, 471
TspGWI	ACGGA	2 cut(s)	384, 602
TspRI	CASTG	1 cut(s)	165
VneI	GTGCAC	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	448
XspI	CTAG	2 cut(s)	123, 601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.