Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010883

Physical Location & Seq

Genomic Coordinates Reverse (-)

90914473 .. 90915894

Gene Structure 1422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00154270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCGGGGATGCTTCCTGGTGTGGAATGTGCTCGAAGAAGACGAGTCCATCAGAGCGGCGAATCGCCAAGTCTGTCTAATACAAATGGCTGCACCAGACGCTCATCTTTTTGCTTGTATGCTAGCAACCATGAAACACACCAAACCTCAACTTTTTCTCTGCAAAGAAGCATGTTGAACCAGGCTTCATACAAGGATGAGAAGCTAGGAGTGGAAGCCAGAGTTGCCAAAGAGAGATTAGATGAAAGATTGAGAACACAAAGAAAATCACAACCCAAAAGGCTAATTAGCAAAGAAGGATCATTGAGTAGTGTGGATAATGGAAGATCTACCATGATTCTGAGGGAGTTGCAGAGAGAAGTGTATGGATCAAAGAAAACTACTAGGACTGGGTCAAGGAAGTTCAGCTGGGCCAAGTTCAGCTGGAAGTCATCTGACCAAGATGAGTGCGCTGTTTGCCTTGAGAGGTTCAGGCCTGGTGAGACTCTGGTGCACCTGCCTTGCGCGCATAGGTTCCATTCTGAGTGTATGGTCCCATGGCTAGAGAACAATGCTCATTGCCCTTGTTGTAGAATGGGAATAGCTTTAGTGTCCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

199

Amino Acids

22.67

Weight (kDa)

9.59

Isoelectric Point (pI)

61.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	148 - 191	1.4e-12	Ring finger domain
zf-RING_11	PF17123	149 - 176	1.7e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	149 - 190	2.6e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	150 - 190	9e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15580 AT2G15580 AT2G15580
fragaria_vesca	FvH4_1g01750
malus_domestica	MD02G1013200.v1.1 MD15G1160000.v1.1
pyrus_communis	pycom02g01230 pycom15g14390
rosa_chinensis	RchiOBHm_Chr2g0086711
rosa_laevigata	RLG00000015784
rosa_multiflora	Rmu_sc0004626.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154270 Rroxscaffold_2G00154520
rosa_rugosa	Rorug01G0469000 Rorug01G0469100
rosa_samantha	Rh2AG021100 Rh2BG021000 Rh2CG021900 Rh2DG021700
rosa_wichuraiana	Rw2G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	504
Acc36I	ACCTGC	1 cut(s)	504
AccBSI	CCGCTC	1 cut(s)	57
AccII	CGCG	1 cut(s)	506
AciI	CCGC	2 cut(s)	5, 57
AclWI	GGATC	2 cut(s)	307, 376
AgsI	TTSAA	1 cut(s)	178
AjnI	CCWGG	3 cut(s)	16, 180, 475
AluBI	AGCT	4 cut(s)	205, 408, 423, 584
AluI	AGCT	4 cut(s)	205, 408, 423, 584
Alw21I	GWGCWC	2 cut(s)	34, 495
Alw26I	GTCTC	1 cut(s)	476
Alw44I	GTGCAC	1 cut(s)	491
AlwI	GGATC	2 cut(s)	307, 376
AoxI	GGCC	2 cut(s)	411, 473
ApaLI	GTGCAC	1 cut(s)	491
ApeKI	GCWGC	1 cut(s)	90
AspLEI	GCGC	3 cut(s)	452, 506, 508
AspS9I	GGNCC	2 cut(s)	411, 532
AsuHPI	GGTGA	1 cut(s)	491
AsuNHI	GCTAGC	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	532
BaeGI	GKGCMC	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	46
Bbv12I	GWGCWC	2 cut(s)	34, 495
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	1 cut(s)	57
BciT130I	CCWGG	3 cut(s)	18, 182, 477
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	4 cut(s)	123, 206, 384, 542
BfuAI	ACCTGC	1 cut(s)	504
BglII	AGATCT	1 cut(s)	326
BisI	GCNGC	2 cut(s)	58, 91
BlsI	GCNGC	2 cut(s)	59, 92
Bme1390I	CCNGG	3 cut(s)	18, 182, 477
Bme18I	GGWCC	1 cut(s)	532
BmgT120I	GGNCC	2 cut(s)	411, 532
BmiI	GGNNCC	2 cut(s)	515, 534
BmrFI	CCNGG	3 cut(s)	18, 182, 477
BmrI	ACTGGG	2 cut(s)	399, 589
BmtI	GCTAGC	1 cut(s)	126
BmuI	ACTGGG	2 cut(s)	399, 589
BpiI	GAAGAC	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	482
BsaJI	CCNNGG	1 cut(s)	536
Bse1I	ACTGG	2 cut(s)	394, 595
Bse3DI	GCAATG	1 cut(s)	556
BseBI	CCWGG	3 cut(s)	18, 182, 477
BseDI	CCNNGG	1 cut(s)	536
BseGI	GGATG	2 cut(s)	15, 202
BseMI	GCAATG	1 cut(s)	556
BseMII	CTCAG	2 cut(s)	332, 513
BseNI	ACTGG	2 cut(s)	394, 595
BsePI	GCGCGC	1 cut(s)	504
BseSI	GKGCMC	1 cut(s)	495
BseXI	GCAGC	1 cut(s)	77
BseYI	CCCAGC	1 cut(s)	408
BsgI	GTGCAG	1 cut(s)	76
Bsh1236I	CGCG	1 cut(s)	506
BshFI	GGCC	2 cut(s)	413, 475
BsiHKAI	GWGCWC	2 cut(s)	34, 495
BslFI	GGGAC	2 cut(s)	518, 577
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	2 cut(s)	518, 577
BsnI	GGCC	2 cut(s)	413, 475
Bsp1286I	GDGCHC	2 cut(s)	34, 495
Bsp143I	GATC	3 cut(s)	299, 326, 368
Bsp19I	CCATGG	1 cut(s)	536
BspACI	CCGC	2 cut(s)	5, 57
BspANI	GGCC	2 cut(s)	413, 475
BspCNI	CTCAG	2 cut(s)	333, 514
BspFNI	CGCG	1 cut(s)	506
BspLI	GGNNCC	2 cut(s)	515, 534
BspMI	ACCTGC	1 cut(s)	504
BspOI	GCTAGC	1 cut(s)	126
BspPI	GGATC	2 cut(s)	307, 376
BsrBI	CCGCTC	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	556
BsrI	ACTGG	2 cut(s)	394, 595
BssECI	CCNNGG	1 cut(s)	536
BssHII	GCGCGC	1 cut(s)	504
BssMI	GATC	3 cut(s)	299, 326, 368
BssT1I	CCWWGG	1 cut(s)	536
Bst2UI	CCWGG	3 cut(s)	18, 182, 477
BstC8I	GCNNGC	2 cut(s)	124, 506
BstDEI	CTNAG	2 cut(s)	341, 522
BstDSI	CCRYGG	1 cut(s)	536
BstF5I	GGATG	2 cut(s)	15, 202
BstFNI	CGCG	1 cut(s)	506
BstHHI	GCGC	3 cut(s)	452, 506, 508
BstKTI	GATC	3 cut(s)	302, 329, 371
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	3 cut(s)	299, 326, 368
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 224, 456, 505
BstNI	CCWGG	3 cut(s)	18, 182, 477
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	3 cut(s)	16, 180, 475
BstSLI	GKGCMC	1 cut(s)	495
BstUI	CGCG	1 cut(s)	506
BstV1I	GCAGC	1 cut(s)	77
BstV2I	GAAGAC	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	413, 475
BtgI	CCRYGG	1 cut(s)	536
BtsCI	GGATG	2 cut(s)	15, 202
BveI	ACCTGC	1 cut(s)	504
Cac8I	GCNNGC	2 cut(s)	124, 506
CfoI	GCGC	3 cut(s)	452, 506, 508
Cfr13I	GGNCC	2 cut(s)	411, 532
CseI	GACGC	1 cut(s)	108
CviAII	CATG	4 cut(s)	131, 172, 334, 537
DdeI	CTNAG	2 cut(s)	341, 522
DpnI	GATC	3 cut(s)	301, 328, 370
DpnII	GATC	3 cut(s)	299, 326, 368
Eco130I	CCWWGG	1 cut(s)	536
Eco147I	AGGCCT	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	532
EcoRII	CCWGG	3 cut(s)	16, 180, 475
EcoT14I	CCWWGG	1 cut(s)	536
ErhI	CCWWGG	1 cut(s)	536
FaeI	CATG	4 cut(s)	134, 175, 337, 540
FaiI	YATR	9 cut(s)	120, 132, 173, 190, 335, 366, 510, 530, 538
FaqI	GGGAC	2 cut(s)	518, 577
FatI	CATG	4 cut(s)	130, 171, 333, 536
Fnu4HI	GCNGC	2 cut(s)	58, 91
FokI	GGATG	2 cut(s)	22, 209
Fsp4HI	GCNGC	2 cut(s)	58, 91
FspBI	CTAG	4 cut(s)	123, 206, 384, 542
GlaI	GCGC	3 cut(s)	451, 505, 507
GluI	GCNGC	2 cut(s)	58, 91
GsaI	CCCAGC	1 cut(s)	412
HaeIII	GGCC	2 cut(s)	413, 475
HgaI	GACGC	1 cut(s)	108
HhaI	GCGC	3 cut(s)	452, 506, 508
Hin1II	CATG	4 cut(s)	134, 175, 337, 540
Hin6I	GCGC	3 cut(s)	450, 504, 506
HinP1I	GCGC	3 cut(s)	450, 504, 506
HinfI	GANTC	4 cut(s)	45, 62, 337, 484
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	4 cut(s)	54, 342, 436, 523
Hpy8I	GTNNAC	1 cut(s)	493
HpyAV	CCTTC	1 cut(s)	290
HpyCH4V	TGCA	4 cut(s)	93, 163, 352, 493
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 224, 456, 505
HpyF3I	CTNAG	2 cut(s)	341, 522
Hsp92II	CATG	4 cut(s)	134, 175, 337, 540
HspAI	GCGC	3 cut(s)	450, 504, 506
Kzo9I	GATC	3 cut(s)	299, 326, 368
Lsp1109I	GCAGC	1 cut(s)	77
MaeI	CTAG	4 cut(s)	123, 206, 384, 542
MalI	GATC	3 cut(s)	301, 328, 370
MbiI	CCGCTC	1 cut(s)	57
MboI	GATC	3 cut(s)	299, 326, 368
MboII	GAAGA	3 cut(s)	48, 51, 336
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	2 cut(s)	34, 495
MluCI	AATT	1 cut(s)	285
MlyI	GAGTC	2 cut(s)	54, 478
MnlI	CCTC	3 cut(s)	157, 336, 459
MspA1I	CMGCKG	2 cut(s)	408, 423
MspR9I	CCNGG	3 cut(s)	18, 182, 477
MvaI	CCWGG	3 cut(s)	18, 182, 477
MvnI	CGCG	1 cut(s)	506
MwoI	GCNNNNNNNGC	4 cut(s)	99, 224, 456, 505
NcoI	CCATGG	1 cut(s)	536
NdeII	GATC	3 cut(s)	299, 326, 368
NheI	GCTAGC	1 cut(s)	122
NlaIII	CATG	4 cut(s)	134, 175, 337, 540
NlaIV	GGNNCC	2 cut(s)	515, 534
NspI	RCATGY	1 cut(s)	175
PaqCI	CACCTGC	1 cut(s)	504
PauI	GCGCGC	1 cut(s)	504
PceI	AGGCCT	1 cut(s)	475
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PfeI	GAWTC	2 cut(s)	62, 337
PflFI	GACNNNGTC	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	59, 92
PleI	GAGTC	2 cut(s)	53, 478
PpsI	GAGTC	2 cut(s)	53, 478
Psp6I	CCWGG	3 cut(s)	16, 180, 475
PspFI	CCCAGC	1 cut(s)	408
PspGI	CCWGG	3 cut(s)	16, 180, 475
PspN4I	GGNNCC	2 cut(s)	515, 534
PspPI	GGNCC	2 cut(s)	411, 532
PsuI	RGATCY	1 cut(s)	326
PsyI	GACNNNGTC	1 cut(s)	391
PteI	GCGCGC	1 cut(s)	504
PvuII	CAGCTG	2 cut(s)	408, 423
SatI	GCNGC	2 cut(s)	58, 91
Sau3AI	GATC	3 cut(s)	299, 326, 368
Sau96I	GGNCC	2 cut(s)	411, 532
SchI	GAGTC	2 cut(s)	54, 478
ScrFI	CCNGG	3 cut(s)	18, 182, 477
SduI	GDGCHC	2 cut(s)	34, 495
SetI	ASST	8 cut(s)	149, 207, 410, 425, 470, 498, 515, 586
SinI	GGWCC	1 cut(s)	532
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	1 cut(s)	285
SseBI	AGGCCT	1 cut(s)	475
SsiI	CCGC	2 cut(s)	5, 57
SspMI	CTAG	4 cut(s)	123, 206, 384, 542
StuI	AGGCCT	1 cut(s)	475
StyD4I	CCNGG	3 cut(s)	16, 180, 475
StyI	CCWWGG	1 cut(s)	536
TaqI	TCGA	1 cut(s)	34
TasI	AATT	1 cut(s)	285
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	62, 337
TseI	GCWGC	1 cut(s)	90
TspDTI	ATGAA	3 cut(s)	147, 177, 258
Tth111I	GACNNNGTC	1 cut(s)	391
VneI	GTGCAC	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	532
XceI	RCATGY	1 cut(s)	175
XspI	CTAG	4 cut(s)	123, 206, 384, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.