Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010883

Physical Location & Seq

Genomic Coordinates Forward (+)

1401441 .. 1402523

Gene Structure 1083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G001710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGATTGATTCAGATGGTTTTAGCTACCATCAATGGTATGGACCCTCTTTTACCTTAGCTGCAATGGCGGGGATGCTTCCTGGTGTGGAATGTGCTCGAAGAAGACGAGTCCATCAGAGCGGCGAATCGCCAAGTCTGGCTAATACAAATGGCTGCACCAGACGCTCATCTTTTTGCTTGTATGCTAGCAACCATGAAACACACCAAACCTCAACTTTTTCTCTGCAAAGAAGCATGTTGAACCAGGCTTCATACAAGGATGAGAAGCTAGGAGTGGAAGCCAGAGTTGCCAAAGAGAGATTAGATGAAAGATTGAGAACACAAAGAAAATCACAACCCAAAAGCAAAGAAGGATCATTGAGTTGTGTGGGTGATGGAAGATCTACCATGATTCTGAGGGAGTTGCAGAGAGAAGTGTATGGATCAAAGAAGACTACTAGGACTGGGTCAAGAAAGTTCAGCTGGGCCAAGTTCAGCTGGAAGTCATCTGACCAAGATGAGTGCGCTGTTTGCCTTGAGAGGTTCAGGCCTGGTGAGACTCTGGTGCACCCGCCTTGCGCACATAGGTTCCATTCTGAGTGTATGGTCCCGTGGCTAGAGAACAATGCTCATTGCCCTTGTTGTAGAATGGGAATAGCAGTGTCCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

216

Amino Acids

24.48

Weight (kDa)

9.2

Isoelectric Point (pI)

58.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	166 - 209	8.7e-12	Ring finger domain
zf-RING_11	PF17123	167 - 194	4.4e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	167 - 208	4.7e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15580 AT2G15580 AT2G15580
fragaria_vesca	FvH4_1g01750
malus_domestica	MD02G1013200.v1.1 MD15G1160000.v1.1
pyrus_communis	pycom02g01230 pycom15g14390
rosa_chinensis	RchiOBHm_Chr2g0086711
rosa_laevigata	RLG00000015784
rosa_multiflora	Rmu_sc0004626.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154270 Rroxscaffold_2G00154520
rosa_rugosa	Rorug01G0469000 Rorug01G0469100
rosa_samantha	Rh2AG021100 Rh2BG021000 Rh2CG021900 Rh2DG021700
rosa_wichuraiana	Rw2G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	559
AccBSI	CCGCTC	1 cut(s)	120
AciI	CCGC	3 cut(s)	68, 120, 551
AclWI	GGATC	2 cut(s)	361, 430
AgsI	TTSAA	1 cut(s)	241
AjnI	CCWGG	3 cut(s)	79, 243, 529
AluBI	AGCT	5 cut(s)	24, 59, 268, 462, 477
AluI	AGCT	5 cut(s)	24, 59, 268, 462, 477
Alw21I	GWGCWC	2 cut(s)	97, 549
Alw26I	GTCTC	1 cut(s)	530
Alw44I	GTGCAC	1 cut(s)	545
AlwI	GGATC	2 cut(s)	361, 430
AoxI	GGCC	2 cut(s)	465, 527
ApaLI	GTGCAC	1 cut(s)	545
ApeKI	GCWGC	2 cut(s)	59, 153
AspLEI	GCGC	2 cut(s)	506, 560
AspS9I	GGNCC	3 cut(s)	41, 465, 586
AsuHPI	GGTGA	2 cut(s)	383, 545
AsuNHI	GCTAGC	1 cut(s)	185
AvaII	GGWCC	2 cut(s)	41, 586
BaeGI	GKGCMC	1 cut(s)	549
BbsI	GAAGAC	2 cut(s)	109, 437
Bbv12I	GWGCWC	2 cut(s)	97, 549
BbvI	GCAGC	2 cut(s)	46, 140
BccI	CCATC	4 cut(s)	8, 36, 120, 368
BciT130I	CCWGG	3 cut(s)	81, 245, 531
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	4 cut(s)	186, 269, 438, 596
BglII	AGATCT	1 cut(s)	380
BisI	GCNGC	3 cut(s)	60, 121, 154
BlsI	GCNGC	3 cut(s)	61, 122, 155
Bme1390I	CCNGG	3 cut(s)	81, 245, 531
Bme18I	GGWCC	2 cut(s)	41, 586
BmgT120I	GGNCC	3 cut(s)	41, 465, 586
BmiI	GGNNCC	3 cut(s)	43, 569, 588
BmrFI	CCNGG	3 cut(s)	81, 245, 531
BmrI	ACTGGG	2 cut(s)	453, 640
BmsI	GCATC	1 cut(s)	63
BmtI	GCTAGC	1 cut(s)	189
BmuI	ACTGGG	2 cut(s)	453, 640
BpiI	GAAGAC	2 cut(s)	109, 437
Bpu10I	CCTNAGC	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	536
BsaJI	CCNNGG	1 cut(s)	590
Bse1I	ACTGG	2 cut(s)	448, 646
Bse3DI	GCAATG	2 cut(s)	69, 610
BseBI	CCWGG	3 cut(s)	81, 245, 531
BseDI	CCNNGG	1 cut(s)	590
BseGI	GGATG	2 cut(s)	78, 265
BseMI	GCAATG	2 cut(s)	69, 610
BseMII	CTCAG	2 cut(s)	386, 567
BseNI	ACTGG	2 cut(s)	448, 646
BseSI	GKGCMC	1 cut(s)	549
BseXI	GCAGC	2 cut(s)	46, 140
BseYI	CCCAGC	1 cut(s)	462
BsgI	GTGCAG	1 cut(s)	139
BshFI	GGCC	2 cut(s)	467, 529
BsiHKAI	GWGCWC	2 cut(s)	97, 549
BslFI	GGGAC	2 cut(s)	572, 628
BsmAI	GTCTC	1 cut(s)	530
BsmFI	GGGAC	2 cut(s)	572, 628
BsnI	GGCC	2 cut(s)	467, 529
Bsp1286I	GDGCHC	2 cut(s)	97, 549
Bsp143I	GATC	3 cut(s)	353, 380, 422
BspACI	CCGC	3 cut(s)	68, 120, 551
BspANI	GGCC	2 cut(s)	467, 529
BspCNI	CTCAG	2 cut(s)	387, 568
BspLI	GGNNCC	3 cut(s)	43, 569, 588
BspOI	GCTAGC	1 cut(s)	189
BspPI	GGATC	2 cut(s)	361, 430
BsrBI	CCGCTC	1 cut(s)	120
BsrDI	GCAATG	2 cut(s)	69, 610
BsrI	ACTGG	2 cut(s)	448, 646
BssECI	CCNNGG	1 cut(s)	590
BssMI	GATC	3 cut(s)	353, 380, 422
Bst2UI	CCWGG	3 cut(s)	81, 245, 531
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	3 cut(s)	55, 395, 576
BstDSI	CCRYGG	1 cut(s)	590
BstF5I	GGATG	2 cut(s)	78, 265
BstHHI	GCGC	2 cut(s)	506, 560
BstKTI	GATC	3 cut(s)	356, 383, 425
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	3 cut(s)	353, 380, 422
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 162, 287, 510
BstNI	CCWGG	3 cut(s)	81, 245, 531
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	3 cut(s)	79, 243, 529
BstSLI	GKGCMC	1 cut(s)	549
BstV1I	GCAGC	2 cut(s)	46, 140
BstV2I	GAAGAC	2 cut(s)	109, 437
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
BsuRI	GGCC	2 cut(s)	467, 529
BtgI	CCRYGG	1 cut(s)	590
BtsCI	GGATG	2 cut(s)	78, 265
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	1 cut(s)	645
Cac8I	GCNNGC	1 cut(s)	187
CfoI	GCGC	2 cut(s)	506, 560
Cfr13I	GGNCC	3 cut(s)	41, 465, 586
CseI	GACGC	1 cut(s)	171
CviAII	CATG	3 cut(s)	194, 235, 388
DdeI	CTNAG	3 cut(s)	55, 395, 576
DpnI	GATC	3 cut(s)	355, 382, 424
DpnII	GATC	3 cut(s)	353, 380, 422
Eco147I	AGGCCT	1 cut(s)	529
Eco47I	GGWCC	2 cut(s)	41, 586
EcoRII	CCWGG	3 cut(s)	79, 243, 529
FaeI	CATG	3 cut(s)	197, 238, 391
FaiI	YATR	9 cut(s)	39, 183, 195, 236, 253, 389, 420, 564, 584
FaqI	GGGAC	2 cut(s)	572, 628
FatI	CATG	3 cut(s)	193, 234, 387
FauI	CCCGC	2 cut(s)	61, 558
Fnu4HI	GCNGC	3 cut(s)	60, 121, 154
FokI	GGATG	2 cut(s)	85, 272
Fsp4HI	GCNGC	3 cut(s)	60, 121, 154
FspBI	CTAG	4 cut(s)	186, 269, 438, 596
FspI	TGCGCA	1 cut(s)	559
GlaI	GCGC	2 cut(s)	505, 559
GluI	GCNGC	3 cut(s)	60, 121, 154
GsaI	CCCAGC	1 cut(s)	466
HaeIII	GGCC	2 cut(s)	467, 529
HgaI	GACGC	1 cut(s)	171
HhaI	GCGC	2 cut(s)	506, 560
Hin1II	CATG	3 cut(s)	197, 238, 391
Hin6I	GCGC	2 cut(s)	504, 558
HinP1I	GCGC	2 cut(s)	504, 558
HinfI	GANTC	5 cut(s)	8, 108, 125, 391, 538
HphI	GGTGA	2 cut(s)	383, 545
Hpy166II	GTNNAC	1 cut(s)	547
Hpy188I	TCNGA	5 cut(s)	13, 117, 396, 490, 577
Hpy188III	TCNNGA	1 cut(s)	450
Hpy8I	GTNNAC	1 cut(s)	547
HpyAV	CCTTC	1 cut(s)	344
HpyCH4V	TGCA	5 cut(s)	62, 156, 226, 406, 547
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 162, 287, 510
HpyF3I	CTNAG	3 cut(s)	55, 395, 576
Hsp92II	CATG	3 cut(s)	197, 238, 391
HspAI	GCGC	2 cut(s)	504, 558
Kzo9I	GATC	3 cut(s)	353, 380, 422
Lsp1109I	GCAGC	2 cut(s)	46, 140
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	4 cut(s)	186, 269, 438, 596
MalI	GATC	3 cut(s)	355, 382, 424
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	3 cut(s)	353, 380, 422
MboII	GAAGA	4 cut(s)	111, 114, 390, 442
MflI	RGATCY	1 cut(s)	380
MhlI	GDGCHC	2 cut(s)	97, 549
MlyI	GAGTC	2 cut(s)	117, 532
MnlI	CCTC	4 cut(s)	55, 220, 390, 513
MspA1I	CMGCKG	2 cut(s)	462, 477
MspR9I	CCNGG	3 cut(s)	81, 245, 531
MvaI	CCWGG	3 cut(s)	81, 245, 531
MwoI	GCNNNNNNNGC	4 cut(s)	65, 162, 287, 510
NdeII	GATC	3 cut(s)	353, 380, 422
NheI	GCTAGC	1 cut(s)	185
NlaIII	CATG	3 cut(s)	197, 238, 391
NlaIV	GGNNCC	3 cut(s)	43, 569, 588
NsbI	TGCGCA	1 cut(s)	559
NspI	RCATGY	1 cut(s)	238
PceI	AGGCCT	1 cut(s)	529
PcsI	WCGNNNNNNNCGW	1 cut(s)	103
PfeI	GAWTC	3 cut(s)	8, 125, 391
PflFI	GACNNNGTC	1 cut(s)	445
PkrI	GCNGC	3 cut(s)	61, 122, 155
PleI	GAGTC	2 cut(s)	116, 532
PpsI	GAGTC	2 cut(s)	116, 532
Psp6I	CCWGG	3 cut(s)	79, 243, 529
PspFI	CCCAGC	1 cut(s)	462
PspGI	CCWGG	3 cut(s)	79, 243, 529
PspN4I	GGNNCC	3 cut(s)	43, 569, 588
PspPI	GGNCC	3 cut(s)	41, 465, 586
PsuI	RGATCY	1 cut(s)	380
PsyI	GACNNNGTC	1 cut(s)	445
PvuII	CAGCTG	2 cut(s)	462, 477
SatI	GCNGC	3 cut(s)	60, 121, 154
Sau3AI	GATC	3 cut(s)	353, 380, 422
Sau96I	GGNCC	3 cut(s)	41, 465, 586
SchI	GAGTC	2 cut(s)	117, 532
ScrFI	CCNGG	3 cut(s)	81, 245, 531
SduI	GDGCHC	2 cut(s)	97, 549
SetI	ASST	9 cut(s)	26, 56, 61, 212, 270, 464, 479, 524, 569
SfaNI	GCATC	1 cut(s)	63
SinI	GGWCC	2 cut(s)	41, 586
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
SseBI	AGGCCT	1 cut(s)	529
SsiI	CCGC	3 cut(s)	68, 120, 551
SspMI	CTAG	4 cut(s)	186, 269, 438, 596
StuI	AGGCCT	1 cut(s)	529
StyD4I	CCNGG	3 cut(s)	79, 243, 529
TaqI	TCGA	1 cut(s)	97
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	3 cut(s)	8, 125, 391
TscAI	CASTG	1 cut(s)	645
TseI	GCWGC	2 cut(s)	59, 153
TspDTI	ATGAA	3 cut(s)	210, 240, 321
TspRI	CASTG	1 cut(s)	645
Tth111I	GACNNNGTC	1 cut(s)	445
VneI	GTGCAC	1 cut(s)	545
VpaK11BI	GGWCC	2 cut(s)	41, 586
XceI	RCATGY	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	35
XspI	CTAG	4 cut(s)	186, 269, 438, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.