E3 ubiquitin-protein ligase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G15580 AT2G15580 AT2G15580 |
| fragaria_vesca | FvH4_1g01750 |
| malus_domestica | MD02G1013200.v1.1 MD15G1160000.v1.1 |
| pyrus_communis | pycom02g01230 pycom15g14390 |
| rosa_chinensis | RchiOBHm_Chr2g0086711 |
| rosa_laevigata | RLG00000015784 |
| rosa_multiflora | Rmu_sc0004626.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00154270 Rroxscaffold_2G00154520 |
| rosa_rugosa | Rorug01G0469000 Rorug01G0469100 |
| rosa_samantha | Rh2AG021100 Rh2BG021000 Rh2CG021900 Rh2DG021700 |
| rosa_wichuraiana | Rw2G001710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 57 |
| AciI | CCGC | 2 cut(s) | 5, 57 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 192 |
| AflII | CTTAAG | 1 cut(s) | 115 |
| AgsI | TTSAA | 1 cut(s) | 179 |
| AjnI | CCWGG | 2 cut(s) | 16, 129 |
| AluBI | AGCT | 1 cut(s) | 154 |
| AluI | AGCT | 1 cut(s) | 154 |
| Alw21I | GWGCWC | 1 cut(s) | 34 |
| ApeKI | GCWGC | 1 cut(s) | 90 |
| BbsI | GAAGAC | 1 cut(s) | 46 |
| Bbv12I | GWGCWC | 1 cut(s) | 34 |
| BbvI | GCAGC | 1 cut(s) | 77 |
| BccI | CCATC | 1 cut(s) | 57 |
| BciT130I | CCWGG | 2 cut(s) | 18, 131 |
| BfaI | CTAG | 1 cut(s) | 155 |
| BfrI | CTTAAG | 1 cut(s) | 115 |
| BisI | GCNGC | 2 cut(s) | 58, 91 |
| BlsI | GCNGC | 2 cut(s) | 59, 92 |
| Bme1390I | CCNGG | 2 cut(s) | 18, 131 |
| BmrFI | CCNGG | 2 cut(s) | 18, 131 |
| BpiI | GAAGAC | 1 cut(s) | 46 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 192 |
| BseBI | CCWGG | 2 cut(s) | 18, 131 |
| BseGI | GGATG | 3 cut(s) | 15, 126, 151 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 192 |
| BseXI | GCAGC | 1 cut(s) | 77 |
| BsgI | GTGCAG | 1 cut(s) | 76 |
| BsiHKAI | GWGCWC | 1 cut(s) | 34 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 192 |
| Bsp1286I | GDGCHC | 1 cut(s) | 34 |
| BspACI | CCGC | 2 cut(s) | 5, 57 |
| BspTI | CTTAAG | 1 cut(s) | 115 |
| BsrBI | CCGCTC | 1 cut(s) | 57 |
| Bst2UI | CCWGG | 2 cut(s) | 18, 131 |
| Bst4CI | ACNGT | 1 cut(s) | 195 |
| BstAFI | CTTAAG | 1 cut(s) | 115 |
| BstF5I | GGATG | 3 cut(s) | 15, 126, 151 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 99 |
| BstNI | CCWGG | 2 cut(s) | 18, 131 |
| BstSCI | CCNGG | 2 cut(s) | 16, 129 |
| BstV1I | GCAGC | 1 cut(s) | 77 |
| BstV2I | GAAGAC | 1 cut(s) | 46 |
| BtsCI | GGATG | 3 cut(s) | 15, 126, 151 |
| CseI | GACGC | 1 cut(s) | 108 |
| CviJI | RGCY | 5 cut(s) | 77, 90, 134, 154, 167 |
| CviKI_1 | RGCY | 5 cut(s) | 77, 90, 134, 154, 167 |
| EcoRII | CCWGG | 2 cut(s) | 16, 129 |
| FaiI | YATR | 1 cut(s) | 139 |
| Fnu4HI | GCNGC | 2 cut(s) | 58, 91 |
| FokI | GGATG | 3 cut(s) | 22, 133, 158 |
| Fsp4HI | GCNGC | 2 cut(s) | 58, 91 |
| FspBI | CTAG | 1 cut(s) | 155 |
| GluI | GCNGC | 2 cut(s) | 58, 91 |
| HgaI | GACGC | 1 cut(s) | 108 |
| HinfI | GANTC | 3 cut(s) | 45, 62, 179 |
| Hpy188I | TCNGA | 1 cut(s) | 54 |
| HpyCH4III | ACNGT | 1 cut(s) | 195 |
| HpyCH4V | TGCA | 1 cut(s) | 93 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 99 |
| LpnPI | CCDG | 7 cut(s) | 3, 30, 59, 109, 116, 143, 181 |
| Lsp1109I | GCAGC | 1 cut(s) | 77 |
| MaeI | CTAG | 1 cut(s) | 155 |
| MaeIII | GTNAC | 1 cut(s) | 189 |
| MbiI | CCGCTC | 1 cut(s) | 57 |
| MboII | GAAGA | 3 cut(s) | 48, 51, 174 |
| MhlI | GDGCHC | 1 cut(s) | 34 |
| MlyI | GAGTC | 1 cut(s) | 54 |
| MseI | TTAA | 2 cut(s) | 116, 125 |
| MspCI | CTTAAG | 1 cut(s) | 115 |
| MspR9I | CCNGG | 2 cut(s) | 18, 131 |
| MvaI | CCWGG | 2 cut(s) | 18, 131 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 99 |
| NmuCI | GTSAC | 1 cut(s) | 189 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 40 |
| PfeI | GAWTC | 2 cut(s) | 62, 179 |
| PkrI | GCNGC | 2 cut(s) | 59, 92 |
| PleI | GAGTC | 1 cut(s) | 53 |
| PpsI | GAGTC | 1 cut(s) | 53 |
| Psp6I | CCWGG | 2 cut(s) | 16, 129 |
| PspGI | CCWGG | 2 cut(s) | 16, 129 |
| SaqAI | TTAA | 2 cut(s) | 116, 125 |
| SatI | GCNGC | 2 cut(s) | 58, 91 |
| SchI | GAGTC | 1 cut(s) | 54 |
| ScrFI | CCNGG | 2 cut(s) | 18, 131 |
| SduI | GDGCHC | 1 cut(s) | 34 |
| SetI | ASST | 1 cut(s) | 156 |
| SmlI | CTYRAG | 1 cut(s) | 115 |
| SmoI | CTYRAG | 1 cut(s) | 115 |
| SsiI | CCGC | 2 cut(s) | 5, 57 |
| SspMI | CTAG | 1 cut(s) | 155 |
| StyD4I | CCNGG | 2 cut(s) | 16, 129 |
| TaaI | ACNGT | 1 cut(s) | 195 |
| TaqI | TCGA | 1 cut(s) | 34 |
| TauI | GCSGC | 1 cut(s) | 60 |
| TfiI | GAWTC | 2 cut(s) | 62, 179 |
| Tru1I | TTAA | 2 cut(s) | 116, 125 |
| Tru9I | TTAA | 2 cut(s) | 116, 125 |
| TseFI | GTSAC | 1 cut(s) | 189 |
| TseI | GCWGC | 1 cut(s) | 90 |
| Tsp45I | GTSAC | 1 cut(s) | 189 |
| TspDTI | ATGAA | 1 cut(s) | 126 |
| Vha464I | CTTAAG | 1 cut(s) | 115 |
| XspI | CTAG | 1 cut(s) | 155 |