Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010883

Physical Location & Seq

Genomic Coordinates Forward (+)

924696 .. 926264

Gene Structure 1569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCGGGGATGCTTCCTGGTGTGGAATGTGCTCGAAGGAGACGAGTCCATCAGAGCAGTGAATCACCAAATCCGGCTAATACAAATGGCTGCACCAGACGCTCATCTTTTTGCCTGTATGCTAGCAACAATGAAACTCACCAAACCTCAACGTTTTCTCTGCAAAGAAGCAAGCTGAATCAGGCTTCATACATGGATGAGAAGCTAGGAGTGGAAGCTAGAGTAGCCAAGGAGAGACTAGATGAAAGATTGAGAACGCAGAGAAAAACACAACCCAATAGGCTAAATAGCAAGGAAGGATCATTGAGAAGTAGTAGTGTGGATGATGGAAGATGTACCATGATTCCTAGGGAGTTGCACAGAGAAGTGTATGGATCAAAGAAGACTACTACTAAGACTGGGTCAAGGAAGTTCAGCTGGGCCAAGTTGAGCTGGAAGTCATCTGACCAAGATGAGTGCGCTGTTTGCCTTGAGAGGTTCATGCCAGGTGAGACCCTGGTGCATCTGCCTTGTGCTCATAGGTTCCATTCTGGCTGCATGGTCCCATGGCTAGAGAAGAATGCTCATTGCCCTTGTTGCAGAATGGGGGTAGCTTTAGTGTCCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

203

Amino Acids

22.87

Weight (kDa)

9.5

Isoelectric Point (pI)

59.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	151 - 194	3.4e-12	Ring finger domain
zf-RING_11	PF17123	152 - 179	7.6e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	152 - 193	1.6e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15580 AT2G15580 AT2G15580
fragaria_vesca	FvH4_1g01750
malus_domestica	MD02G1013200.v1.1 MD15G1160000.v1.1
pyrus_communis	pycom02g01230 pycom15g14390
rosa_chinensis	RchiOBHm_Chr2g0086711
rosa_laevigata	RLG00000015784
rosa_multiflora	Rmu_sc0004626.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154270 Rroxscaffold_2G00154520
rosa_rugosa	Rorug01G0469000 Rorug01G0469100
rosa_samantha	Rh2AG021100 Rh2BG021000 Rh2CG021900 Rh2DG021700
rosa_wichuraiana	Rw2G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AclI	AACGTT	1 cut(s)	152
AclWI	GGATC	2 cut(s)	307, 382
AfaI	GTAC	1 cut(s)	337
AjnI	CCWGG	3 cut(s)	16, 484, 495
AluBI	AGCT	6 cut(s)	175, 205, 218, 417, 432, 593
AluI	AGCT	6 cut(s)	175, 205, 218, 417, 432, 593
Alw21I	GWGCWC	2 cut(s)	34, 517
Alw26I	GTCTC	3 cut(s)	34, 229, 485
AlwI	GGATC	2 cut(s)	307, 382
AoxI	GGCC	1 cut(s)	420
ApeKI	GCWGC	2 cut(s)	90, 534
AspA2I	CCTAGG	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	461
AspS9I	GGNCC	2 cut(s)	420, 541
AsuHPI	GGTGA	3 cut(s)	57, 131, 500
AsuNHI	GCTAGC	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	541
AvrII	CCTAGG	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	389
Bbv12I	GWGCWC	2 cut(s)	34, 517
BbvI	GCAGC	2 cut(s)	77, 521
BccI	CCATC	2 cut(s)	57, 320
BciT130I	CCWGG	3 cut(s)	18, 486, 497
BcoDI	GTCTC	3 cut(s)	34, 229, 485
BfaI	CTAG	6 cut(s)	123, 206, 219, 239, 348, 551
BisI	GCNGC	2 cut(s)	91, 535
BlnI	CCTAGG	1 cut(s)	347
BlsI	GCNGC	2 cut(s)	92, 536
Bme1390I	CCNGG	3 cut(s)	18, 486, 497
Bme18I	GGWCC	1 cut(s)	541
BmgT120I	GGNCC	2 cut(s)	420, 541
BmiI	GGNNCC	2 cut(s)	524, 543
BmrFI	CCNGG	3 cut(s)	18, 486, 497
BmrI	ACTGGG	2 cut(s)	408, 598
BmsI	GCATC	1 cut(s)	511
BmtI	GCTAGC	1 cut(s)	126
BmuI	ACTGGG	2 cut(s)	408, 598
BpiI	GAAGAC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	491
BsaI	GGTCTC	1 cut(s)	485
BsaJI	CCNNGG	4 cut(s)	228, 347, 495, 545
Bse1I	ACTGG	2 cut(s)	403, 604
Bse3DI	GCAATG	1 cut(s)	565
BseBI	CCWGG	3 cut(s)	18, 486, 497
BseDI	CCNNGG	4 cut(s)	228, 347, 495, 545
BseGI	GGATG	3 cut(s)	15, 202, 328
BseMI	GCAATG	1 cut(s)	565
BseNI	ACTGG	2 cut(s)	403, 604
BseXI	GCAGC	2 cut(s)	77, 521
BseYI	CCCAGC	1 cut(s)	417
BsgI	GTGCAG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	422
BsiHKAI	GWGCWC	2 cut(s)	34, 517
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	2 cut(s)	527, 586
BsmAI	GTCTC	3 cut(s)	34, 229, 485
BsmBI	CGTCTC	1 cut(s)	34
BsmFI	GGGAC	2 cut(s)	527, 586
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	1 cut(s)	422
Bso31I	GGTCTC	1 cut(s)	485
Bsp1286I	GDGCHC	2 cut(s)	34, 517
Bsp143I	GATC	2 cut(s)	299, 374
Bsp19I	CCATGG	1 cut(s)	545
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	422
BspLI	GGNNCC	2 cut(s)	524, 543
BspOI	GCTAGC	1 cut(s)	126
BspPI	GGATC	2 cut(s)	307, 382
BspTNI	GGTCTC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	565
BsrI	ACTGG	2 cut(s)	403, 604
BssECI	CCNNGG	4 cut(s)	228, 347, 495, 545
BssMI	GATC	2 cut(s)	299, 374
BssT1I	CCWWGG	3 cut(s)	228, 347, 545
Bst2UI	CCWGG	3 cut(s)	18, 486, 497
BstC8I	GCNNGC	2 cut(s)	124, 173
BstDEI	CTNAG	1 cut(s)	393
BstDSI	CCRYGG	1 cut(s)	545
BstF5I	GGATG	3 cut(s)	15, 202, 328
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	2 cut(s)	302, 377
BstMAI	GTCTC	3 cut(s)	34, 229, 485
BstMBI	GATC	2 cut(s)	299, 374
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 224, 465, 576
BstNI	CCWGG	3 cut(s)	18, 486, 497
BstSCI	CCNGG	3 cut(s)	16, 484, 495
BstV1I	GCAGC	2 cut(s)	77, 521
BstV2I	GAAGAC	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	422
BtgI	CCRYGG	1 cut(s)	545
BtsCI	GGATG	3 cut(s)	15, 202, 328
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	2 cut(s)	124, 173
CfoI	GCGC	1 cut(s)	461
Cfr13I	GGNCC	2 cut(s)	420, 541
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	5 cut(s)	193, 340, 481, 538, 546
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	2 cut(s)	301, 376
DpnII	GATC	2 cut(s)	299, 374
Eco130I	CCWWGG	3 cut(s)	228, 347, 545
Eco31I	GGTCTC	1 cut(s)	485
Eco47I	GGWCC	1 cut(s)	541
EcoRII	CCWGG	3 cut(s)	16, 484, 495
EcoT14I	CCWWGG	3 cut(s)	228, 347, 545
ErhI	CCWWGG	3 cut(s)	228, 347, 545
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	5 cut(s)	196, 343, 484, 541, 549
FaiI	YATR	9 cut(s)	120, 190, 194, 341, 372, 482, 519, 539, 547
FaqI	GGGAC	2 cut(s)	527, 586
FatI	CATG	5 cut(s)	192, 339, 480, 537, 545
Fnu4HI	GCNGC	2 cut(s)	91, 535
FokI	GGATG	3 cut(s)	22, 209, 335
Fsp4HI	GCNGC	2 cut(s)	91, 535
FspBI	CTAG	6 cut(s)	123, 206, 219, 239, 348, 551
GlaI	GCGC	1 cut(s)	460
GluI	GCNGC	2 cut(s)	91, 535
GsaI	CCCAGC	1 cut(s)	421
HaeIII	GGCC	1 cut(s)	422
HapII	CCGG	1 cut(s)	74
HgaI	GACGC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	461
Hin1II	CATG	5 cut(s)	196, 343, 484, 541, 549
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HinfI	GANTC	4 cut(s)	45, 62, 178, 343
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	3 cut(s)	57, 131, 500
Hpy188I	TCNGA	2 cut(s)	54, 445
HpyAV	CCTTC	2 cut(s)	30, 290
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	6 cut(s)	93, 163, 358, 502, 537, 579
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 224, 465, 576
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	5 cut(s)	196, 343, 484, 541, 549
HspAI	GCGC	1 cut(s)	459
Kzo9I	GATC	2 cut(s)	299, 374
Lsp1109I	GCAGC	2 cut(s)	77, 521
LweI	GCATC	1 cut(s)	511
MaeI	CTAG	6 cut(s)	123, 206, 219, 239, 348, 551
MaeII	ACGT	1 cut(s)	152
MalI	GATC	2 cut(s)	301, 376
MboI	GATC	2 cut(s)	299, 374
MboII	GAAGA	3 cut(s)	342, 394, 568
MhlI	GDGCHC	2 cut(s)	34, 517
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	2 cut(s)	157, 468
MspA1I	CMGCKG	1 cut(s)	417
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	3 cut(s)	18, 486, 497
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	3 cut(s)	18, 486, 497
MwoI	GCNNNNNNNGC	4 cut(s)	99, 224, 465, 576
NcoI	CCATGG	1 cut(s)	545
NdeII	GATC	2 cut(s)	299, 374
NheI	GCTAGC	1 cut(s)	122
NlaIII	CATG	5 cut(s)	196, 343, 484, 541, 549
NlaIV	GGNNCC	2 cut(s)	524, 543
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PctI	GAATGC	1 cut(s)	565
PfeI	GAWTC	3 cut(s)	62, 178, 343
PflFI	GACNNNGTC	1 cut(s)	400
PkrI	GCNGC	2 cut(s)	92, 536
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp1406I	AACGTT	1 cut(s)	152
Psp6I	CCWGG	3 cut(s)	16, 484, 495
PspFI	CCCAGC	1 cut(s)	417
PspGI	CCWGG	3 cut(s)	16, 484, 495
PspN4I	GGNNCC	2 cut(s)	524, 543
PspPI	GGNCC	2 cut(s)	420, 541
PsyI	GACNNNGTC	1 cut(s)	400
PvuII	CAGCTG	1 cut(s)	417
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
SatI	GCNGC	2 cut(s)	91, 535
Sau3AI	GATC	2 cut(s)	299, 374
Sau96I	GGNCC	2 cut(s)	420, 541
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	3 cut(s)	18, 486, 497
SduI	GDGCHC	2 cut(s)	34, 517
SfaNI	GCATC	1 cut(s)	511
SinI	GGWCC	1 cut(s)	541
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	6 cut(s)	123, 206, 219, 239, 348, 551
StyD4I	CCNGG	3 cut(s)	16, 484, 495
StyI	CCWWGG	3 cut(s)	228, 347, 545
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	1 cut(s)	34
TfiI	GAWTC	3 cut(s)	62, 178, 343
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	2 cut(s)	90, 534
TspDTI	ATGAA	4 cut(s)	147, 177, 258, 469
TspRI	CASTG	1 cut(s)	64
Tth111I	GACNNNGTC	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	541
XmaJI	CCTAGG	1 cut(s)	347
XspI	CTAG	6 cut(s)	123, 206, 219, 239, 348, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.