Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010883

Physical Location & Seq

Genomic Coordinates Forward (+)

9818396 .. 9819361

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g14390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCTGGAATGCTTCCTGGTGTGGAAAGCGCTCGGAGGAGACGAGTCCGTCAGAGCGGAGAGCCACTGTGTGTCGGCGGCATCCATGGCAGCACCAGGCGCTCTTGTTTCTGTTTGTATGCTAGCAACCATGAATCTCACCACACCTCCACTTCTCCACTGCAACGAAGCATACTGAACCAAGCATACATCGATGAGAAGCTGGGAGTGGAAGCCAGAGAAGCAAAGGGGAGATTAGATGAAAGACTGAGAACACAAAGAAAATCACAACTCAAAAGGCACAATAATAGTAACAACAAAGGACTGAAAAGTGTGGATGGAGGAGGAAGATCGATCTGTGGTGCTCGGAGAGTTGCAGATAGAAGTGTATGGAGCTACAAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

129

Amino Acids

14.32

Weight (kDa)

10.5

Isoelectric Point (pI)

74.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15580 AT2G15580 AT2G15580
fragaria_vesca	FvH4_1g01750
malus_domestica	MD02G1013200.v1.1 MD15G1160000.v1.1
pyrus_communis	pycom02g01230 pycom15g14390
rosa_chinensis	RchiOBHm_Chr2g0086711
rosa_laevigata	RLG00000015784
rosa_multiflora	Rmu_sc0004626.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154270 Rroxscaffold_2G00154520
rosa_rugosa	Rorug01G0469000 Rorug01G0469100
rosa_samantha	Rh2AG021100 Rh2BG021000 Rh2CG021900 Rh2DG021700
rosa_wichuraiana	Rw2G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	48
AccBSI	CCGCTC	1 cut(s)	57
AciI	CCGC	2 cut(s)	57, 78
AdeI	CACNNNGTG	1 cut(s)	71
AfeI	AGCGCT	1 cut(s)	31
AjnI	CCWGG	2 cut(s)	16, 95
AluBI	AGCT	2 cut(s)	202, 375
AluI	AGCT	2 cut(s)	202, 375
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	34
Aor51HI	AGCGCT	1 cut(s)	31
ApeKI	GCWGC	1 cut(s)	90
AspLEI	GCGC	2 cut(s)	32, 102
AsuHPI	GGTGA	1 cut(s)	131
AsuNHI	GCTAGC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	1 cut(s)	311
BciT130I	CCWGG	2 cut(s)	18, 97
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	1 cut(s)	123
BfoI	RGCGCY	2 cut(s)	33, 103
BisI	GCNGC	2 cut(s)	79, 91
BlsI	GCNGC	2 cut(s)	80, 92
Bme1390I	CCNGG	2 cut(s)	18, 97
BmrFI	CCNGG	2 cut(s)	18, 97
BmsI	GCATC	1 cut(s)	90
BmtI	GCTAGC	1 cut(s)	126
Bsa29I	ATCGAT	2 cut(s)	192, 332
BsaJI	CCNNGG	1 cut(s)	85
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
BseBI	CCWGG	2 cut(s)	18, 97
BseCI	ATCGAT	2 cut(s)	192, 332
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	2 cut(s)	81, 322
BseMII	CTCAG	1 cut(s)	239
BseRI	GAGGAG	2 cut(s)	52, 336
BseXI	GCAGC	1 cut(s)	102
BseYI	CCCAGC	1 cut(s)	202
BshVI	ATCGAT	2 cut(s)	192, 332
BsiHKAI	GWGCWC	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	34
BsmBI	CGTCTC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp143I	GATC	2 cut(s)	329, 333
Bsp19I	CCATGG	1 cut(s)	85
BspACI	CCGC	2 cut(s)	57, 78
BspCNI	CTCAG	1 cut(s)	240
BspDI	ATCGAT	2 cut(s)	192, 332
BspOI	GCTAGC	1 cut(s)	126
BsrBI	CCGCTC	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	2 cut(s)	329, 333
BssT1I	CCWWGG	1 cut(s)	85
Bst2UI	CCWGG	2 cut(s)	18, 97
Bst4CI	ACNGT	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	1 cut(s)	248
BstDSI	CCRYGG	1 cut(s)	85
BstF5I	GGATG	2 cut(s)	81, 322
BstH2I	RGCGCY	2 cut(s)	33, 103
BstHHI	GCGC	2 cut(s)	32, 102
BstKTI	GATC	2 cut(s)	332, 336
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	2 cut(s)	329, 333
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 99, 221
BstNI	CCWGG	2 cut(s)	18, 97
BstSCI	CCNGG	2 cut(s)	16, 95
BstV1I	GCAGC	1 cut(s)	102
Bsu15I	ATCGAT	2 cut(s)	192, 332
BsuTUI	ATCGAT	2 cut(s)	192, 332
BtgI	CCRYGG	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	81, 322
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	2 cut(s)	65, 158
Cac8I	GCNNGC	1 cut(s)	124
CfoI	GCGC	2 cut(s)	32, 102
ClaI	ATCGAT	2 cut(s)	192, 332
CviAII	CATG	2 cut(s)	86, 131
CviJI	RGCY	5 cut(s)	5, 64, 202, 215, 375
CviKI_1	RGCY	5 cut(s)	5, 64, 202, 215, 375
DdeI	CTNAG	1 cut(s)	248
DpnI	GATC	2 cut(s)	331, 335
DpnII	GATC	2 cut(s)	329, 333
DraIII	CACNNNGTG	1 cut(s)	71
DrdI	GACNNNNNNGTC	1 cut(s)	48
DseDI	GACNNNNNNGTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	85
Eco47III	AGCGCT	1 cut(s)	31
EcoRII	CCWGG	2 cut(s)	16, 95
EcoT14I	CCWWGG	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	85
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	2 cut(s)	89, 134
FaiI	YATR	6 cut(s)	87, 120, 132, 173, 187, 370
FatI	CATG	2 cut(s)	85, 130
Fnu4HI	GCNGC	2 cut(s)	79, 91
FokI	GGATG	2 cut(s)	68, 329
Fsp4HI	GCNGC	2 cut(s)	79, 91
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	2 cut(s)	31, 101
GluI	GCNGC	2 cut(s)	79, 91
GsaI	CCCAGC	1 cut(s)	206
HaeII	RGCGCY	2 cut(s)	33, 103
HhaI	GCGC	2 cut(s)	32, 102
Hin1II	CATG	2 cut(s)	89, 134
Hin6I	GCGC	2 cut(s)	30, 100
HinP1I	GCGC	2 cut(s)	30, 100
HinfI	GANTC	2 cut(s)	45, 134
HphI	GGTGA	1 cut(s)	131
Hpy188I	TCNGA	3 cut(s)	36, 54, 348
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	163, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 99, 221
HpyF3I	CTNAG	1 cut(s)	248
Hsp92II	CATG	2 cut(s)	89, 134
HspAI	GCGC	2 cut(s)	30, 100
Kzo9I	GATC	2 cut(s)	329, 333
LmnI	GCTCC	1 cut(s)	372
LpnPI	CCDG	6 cut(s)	3, 30, 82, 109, 188, 229
Lsp1109I	GCAGC	1 cut(s)	102
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	2 cut(s)	331, 335
MbiI	CCGCTC	1 cut(s)	57
MboI	GATC	2 cut(s)	329, 333
MboII	GAAGA	1 cut(s)	339
MhlI	GDGCHC	1 cut(s)	346
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	4 cut(s)	30, 157, 314, 317
MspR9I	CCNGG	2 cut(s)	18, 97
Mva1269I	GAATGC	1 cut(s)	15
MvaI	CCWGG	2 cut(s)	18, 97
MwoI	GCNNNNNNNGC	3 cut(s)	87, 99, 221
NcoI	CCATGG	1 cut(s)	85
NdeII	GATC	2 cut(s)	329, 333
NheI	GCTAGC	1 cut(s)	122
NlaIII	CATG	2 cut(s)	89, 134
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PctI	GAATGC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	80, 92
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	16, 95
PspFI	CCCAGC	1 cut(s)	202
PspGI	CCWGG	2 cut(s)	16, 95
PsrI	GAACNNNNNNTAC	2 cut(s)	170, 202
SatI	GCNGC	2 cut(s)	79, 91
Sau3AI	GATC	2 cut(s)	329, 333
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	2 cut(s)	18, 97
SduI	GDGCHC	1 cut(s)	346
SetI	ASST	3 cut(s)	149, 204, 377
SfaNI	GCATC	1 cut(s)	90
SsiI	CCGC	2 cut(s)	57, 78
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	16, 95
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	69
TaqI	TCGA	2 cut(s)	192, 332
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	134
TscAI	CASTG	2 cut(s)	72, 165
TseI	GCWGC	1 cut(s)	90
TspDTI	ATGAA	2 cut(s)	147, 255
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	2 cut(s)	72, 165
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.