Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010883

Physical Location & Seq

Genomic Coordinates Forward (+)

11981048 .. 11982890

Gene Structure 1843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1160000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCTGGAATGCTCCCTGGTGTGGAAAGCGCTCGGAGGAGACGAGTCCGTCAGAGAGGAGAGCCACCGTGTGTCGGCGGCATCCATGGCAGCACCAGGCGCTCTTGTTTCTGTTTGTATGCTAGCAACCATGAATCTCACCACACCTCCACTTCTCCGCTGCAACGAAGCATACTGAACCAAGCATACATGGATGAGAAGCTGGGAGTGGAAGCCAGAGAAGCAAAGGGGAGATTAGATGAAAGACTGAGAACACAAAGAAAATCACAACTTAAAAGGCACAATAATAGTAACAACAAAGGACTGAAAAGTGTGGATGGAGGAGGAAGATCATCTGTGGTGCTCGGAGAGTTGCAGAAAGAAGTGTATGGAGCTAAAAAGAGTAGCAGTAGCACAAGTGGATCAAAGAAGTTCAGCTGGTCAAAGTTGTCCTGGAAGTCATCAGACCAGGATGAGTGTGCAGTCTGCCTGGAAAGGTTCAGTCCAGGTAAGACCCTGGTGCACCTGCCCTGTGCCCATAGGTTCCACTCTGGTTGCATGGTTCCATGGCTTCACAGCAATGCTCATTGCCCGTGTTGCAGAATGGAGATTTCTCCTAGTAATTGTATTGGTAATTTTGTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

209

Amino Acids

23.08

Weight (kDa)

9.71

Isoelectric Point (pI)

62.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	151 - 194	1.2e-11	Ring finger domain
zf-RING_11	PF17123	152 - 179	8.1e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	152 - 193	3.1e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15580 AT2G15580 AT2G15580
fragaria_vesca	FvH4_1g01750
malus_domestica	MD02G1013200.v1.1 MD15G1160000.v1.1
pyrus_communis	pycom02g01230 pycom15g14390
rosa_chinensis	RchiOBHm_Chr2g0086711
rosa_laevigata	RLG00000015784
rosa_multiflora	Rmu_sc0004626.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154270 Rroxscaffold_2G00154520
rosa_rugosa	Rorug01G0469000 Rorug01G0469100
rosa_samantha	Rh2AG021100 Rh2BG021000 Rh2CG021900 Rh2DG021700
rosa_wichuraiana	Rw2G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	513
AasI	GACNNNNNNGTC	1 cut(s)	48
Acc36I	ACCTGC	1 cut(s)	513
AciI	CCGC	2 cut(s)	78, 158
AclWI	GGATC	1 cut(s)	409
AdeI	CACNNNGTG	1 cut(s)	71
AfeI	AGCGCT	1 cut(s)	31
AfiI	CCNNNNNNNGG	2 cut(s)	22, 74
AjnI	CCWGG	7 cut(s)	16, 95, 431, 447, 468, 484, 495
AluBI	AGCT	3 cut(s)	202, 374, 417
AluI	AGCT	3 cut(s)	202, 374, 417
Alw21I	GWGCWC	2 cut(s)	345, 504
Alw26I	GTCTC	1 cut(s)	34
Alw44I	GTGCAC	1 cut(s)	500
AlwI	GGATC	1 cut(s)	409
Aor51HI	AGCGCT	1 cut(s)	31
ApaLI	GTGCAC	1 cut(s)	500
ApeKI	GCWGC	2 cut(s)	90, 160
AspLEI	GCGC	2 cut(s)	32, 102
AsuHPI	GGTGA	1 cut(s)	131
AsuNHI	GCTAGC	1 cut(s)	122
BaeGI	GKGCMC	2 cut(s)	504, 517
Bbv12I	GWGCWC	2 cut(s)	345, 504
BbvI	GCAGC	2 cut(s)	102, 147
BccI	CCATC	1 cut(s)	311
BciT130I	CCWGG	7 cut(s)	18, 97, 433, 449, 470, 486, 497
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	2 cut(s)	123, 597
BfoI	RGCGCY	2 cut(s)	33, 103
BfuAI	ACCTGC	1 cut(s)	513
BisI	GCNGC	3 cut(s)	79, 91, 161
BlsI	GCNGC	3 cut(s)	80, 92, 162
Bme1390I	CCNGG	7 cut(s)	18, 97, 433, 449, 470, 486, 497
BmiI	GGNNCC	2 cut(s)	524, 543
BmrFI	CCNGG	7 cut(s)	18, 97, 433, 449, 470, 486, 497
BmsI	GCATC	1 cut(s)	90
BmtI	GCTAGC	1 cut(s)	126
BsaJI	CCNNGG	4 cut(s)	16, 85, 495, 545
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 74
Bse3DI	GCAATG	2 cut(s)	565, 565
BseBI	CCWGG	7 cut(s)	18, 97, 433, 449, 470, 486, 497
BseDI	CCNNGG	4 cut(s)	16, 85, 495, 545
BseGI	GGATG	4 cut(s)	81, 199, 322, 457
BseLI	CCNNNNNNNGG	2 cut(s)	22, 74
BseMI	GCAATG	2 cut(s)	565, 565
BseMII	CTCAG	1 cut(s)	239
BseRI	GAGGAG	3 cut(s)	52, 72, 336
BseSI	GKGCMC	2 cut(s)	504, 517
BseXI	GCAGC	2 cut(s)	102, 147
BseYI	CCCAGC	1 cut(s)	202
BsgI	GTGCAG	1 cut(s)	480
BsiHKAI	GWGCWC	2 cut(s)	345, 504
BslI	CCNNNNNNNGG	2 cut(s)	22, 74
BsmAI	GTCTC	1 cut(s)	34
BsmBI	CGTCTC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	15
Bsp1286I	GDGCHC	3 cut(s)	345, 504, 517
Bsp143I	GATC	2 cut(s)	329, 401
Bsp19I	CCATGG	2 cut(s)	85, 545
BspACI	CCGC	2 cut(s)	78, 158
BspCNI	CTCAG	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	524, 543
BspMI	ACCTGC	1 cut(s)	513
BspOI	GCTAGC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	409
BsrDI	GCAATG	2 cut(s)	565, 565
BssECI	CCNNGG	4 cut(s)	16, 85, 495, 545
BssMI	GATC	2 cut(s)	329, 401
BssT1I	CCWWGG	2 cut(s)	85, 545
Bst2UI	CCWGG	7 cut(s)	18, 97, 433, 449, 470, 486, 497
Bst4CI	ACNGT	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	1 cut(s)	248
BstDSI	CCRYGG	2 cut(s)	85, 545
BstF5I	GGATG	4 cut(s)	81, 199, 322, 457
BstH2I	RGCGCY	2 cut(s)	33, 103
BstHHI	GCGC	2 cut(s)	32, 102
BstKTI	GATC	2 cut(s)	332, 404
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	2 cut(s)	329, 401
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 99, 221, 576
BstNI	CCWGG	7 cut(s)	18, 97, 433, 449, 470, 486, 497
BstSCI	CCNGG	7 cut(s)	16, 95, 431, 447, 468, 484, 495
BstSLI	GKGCMC	2 cut(s)	504, 517
BstV1I	GCAGC	2 cut(s)	102, 147
BtgI	CCRYGG	2 cut(s)	85, 545
BtsCI	GGATG	4 cut(s)	81, 199, 322, 457
BveI	ACCTGC	1 cut(s)	513
Cac8I	GCNNGC	1 cut(s)	124
CfoI	GCGC	2 cut(s)	32, 102
CspCI	CAANNNNNGTGG	2 cut(s)	515, 550
CviAII	CATG	5 cut(s)	86, 131, 190, 538, 546
CviJI	RGCY	7 cut(s)	5, 64, 202, 215, 374, 417, 550
CviKI_1	RGCY	7 cut(s)	5, 64, 202, 215, 374, 417, 550
DdeI	CTNAG	1 cut(s)	248
DpnI	GATC	2 cut(s)	331, 403
DpnII	GATC	2 cut(s)	329, 401
DraIII	CACNNNGTG	1 cut(s)	71
DrdI	GACNNNNNNGTC	1 cut(s)	48
DseDI	GACNNNNNNGTC	1 cut(s)	48
Eco130I	CCWWGG	2 cut(s)	85, 545
Eco47III	AGCGCT	1 cut(s)	31
EcoRII	CCWGG	7 cut(s)	16, 95, 431, 447, 468, 484, 495
EcoT14I	CCWWGG	2 cut(s)	85, 545
ErhI	CCWWGG	2 cut(s)	85, 545
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	5 cut(s)	89, 134, 193, 541, 549
FatI	CATG	5 cut(s)	85, 130, 189, 537, 545
Fnu4HI	GCNGC	3 cut(s)	79, 91, 161
FokI	GGATG	4 cut(s)	68, 206, 329, 464
Fsp4HI	GCNGC	3 cut(s)	79, 91, 161
FspBI	CTAG	2 cut(s)	123, 597
GlaI	GCGC	2 cut(s)	31, 101
GluI	GCNGC	3 cut(s)	79, 91, 161
GsaI	CCCAGC	1 cut(s)	206
HaeII	RGCGCY	2 cut(s)	33, 103
HhaI	GCGC	2 cut(s)	32, 102
Hin1II	CATG	5 cut(s)	89, 134, 193, 541, 549
Hin6I	GCGC	2 cut(s)	30, 100
HinP1I	GCGC	2 cut(s)	30, 100
HinfI	GANTC	2 cut(s)	45, 134
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	4 cut(s)	36, 54, 347, 445
Hpy8I	GTNNAC	1 cut(s)	502
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4V	TGCA	6 cut(s)	163, 355, 461, 502, 537, 579
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 99, 221, 576
HpyF3I	CTNAG	1 cut(s)	248
Hsp92II	CATG	5 cut(s)	89, 134, 193, 541, 549
HspAI	GCGC	2 cut(s)	30, 100
Kzo9I	GATC	2 cut(s)	329, 401
LmnI	GCTCC	2 cut(s)	18, 371
Lsp1109I	GCAGC	2 cut(s)	102, 147
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	2 cut(s)	123, 597
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	2 cut(s)	331, 403
MboI	GATC	2 cut(s)	329, 401
MboII	GAAGA	1 cut(s)	339
MhlI	GDGCHC	3 cut(s)	345, 504, 517
MluCI	AATT	3 cut(s)	601, 613, 622
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	5 cut(s)	30, 50, 157, 314, 317
MseI	TTAA	2 cut(s)	273, 625
MslI	CAYNNNNRTG	1 cut(s)	558
MspA1I	CMGCKG	2 cut(s)	160, 417
MspR9I	CCNGG	7 cut(s)	18, 97, 433, 449, 470, 486, 497
Mva1269I	GAATGC	1 cut(s)	15
MvaI	CCWGG	7 cut(s)	18, 97, 433, 449, 470, 486, 497
MwoI	GCNNNNNNNGC	4 cut(s)	87, 99, 221, 576
NcoI	CCATGG	2 cut(s)	85, 545
NdeII	GATC	2 cut(s)	329, 401
NheI	GCTAGC	1 cut(s)	122
NlaIII	CATG	5 cut(s)	89, 134, 193, 541, 549
NlaIV	GGNNCC	2 cut(s)	524, 543
PaqCI	CACCTGC	1 cut(s)	513
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PctI	GAATGC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	431
PkrI	GCNGC	3 cut(s)	80, 92, 162
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp6I	CCWGG	7 cut(s)	16, 95, 431, 447, 468, 484, 495
PspFI	CCCAGC	1 cut(s)	202
PspGI	CCWGG	7 cut(s)	16, 95, 431, 447, 468, 484, 495
PspN4I	GGNNCC	2 cut(s)	524, 543
PsrI	GAACNNNNNNTAC	2 cut(s)	170, 202
PvuII	CAGCTG	1 cut(s)	417
RseI	CAYNNNNRTG	1 cut(s)	558
SaqAI	TTAA	2 cut(s)	273, 625
SatI	GCNGC	3 cut(s)	79, 91, 161
Sau3AI	GATC	2 cut(s)	329, 401
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	7 cut(s)	18, 97, 433, 449, 470, 486, 497
SduI	GDGCHC	3 cut(s)	345, 504, 517
SetI	ASST	8 cut(s)	149, 204, 376, 419, 479, 490, 507, 524
SfaNI	GCATC	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	558
Sse9I	AATT	3 cut(s)	601, 613, 622
SsiI	CCGC	2 cut(s)	78, 158
SspMI	CTAG	2 cut(s)	123, 597
StyD4I	CCNGG	7 cut(s)	16, 95, 431, 447, 468, 484, 495
StyI	CCWWGG	2 cut(s)	85, 545
TaaI	ACNGT	1 cut(s)	69
TasI	AATT	3 cut(s)	601, 613, 622
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	2 cut(s)	273, 625
Tru9I	TTAA	2 cut(s)	273, 625
TseI	GCWGC	2 cut(s)	90, 160
TspDTI	ATGAA	2 cut(s)	147, 255
TspGWI	ACGGA	1 cut(s)	38
VneI	GTGCAC	1 cut(s)	500
XspI	CTAG	2 cut(s)	123, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.