AT2G15590

Protein of unknown function (DUF1685)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015001
Physical Location & Seq
Forward (+)
6801803 .. 6802734
932 bp
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UTR
Exon/CDS
Intron
AT2G15590.2

Sequence Viewer

Length: 378 bp
ATGTCGAACCACGCGCCACAGCCTCCAAGACCTCTGATGAAGCAATACTCGTGGTCACCGGACATGAGTCGCGAAGAGGCTTGGCTGCGTAAGAAAAAGAAACGCCCACTGGATCTCCTTCCTCGCAGCAAGAGTGTCACGAATGATGATATCGAGGAGCTTAAAGGCTGTTTCGAGCTTGGTTTTGGGTTTGAAACAGAATCTCCTGATTTGAATCCAAGGCTCTCCCATACAATCCCCGCTCTTGATCTGTACTGCGCGGTTCATAGACAATACAGCAACCATTTGTCTCGGACGTCTTCATTCGCGTCGGATCATGAAGTCAGCAACTCCAACAACATCACGACCATCGTCGACAAAGCAACTTTAAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

125

Amino Acids

14.35

Weight (kDa)

8.6

Isoelectric Point (pI)

59.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 46 - 105 1.1e-28 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015001)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15590 AT2G15590 AT2G15610 AT4G33985
fragaria_vesca FvH4_2g05911
malus_domestica MD05G1081800.v1.1
prunus_persica Prupe.8G126400_v2.0.a1 Prupe.8G126400_v2.0.a1
pyrus_communis pycom05g07660
rosa_chinensis RchiOBHm_Chr6g0257581
rosa_laevigata RLG00000014703
rosa_rugosa Rorug05G0570500 Rorug05G0571600
rosa_samantha Rh6AG089000 Rh6CG077600
rosa_wichuraiana Rw6G007760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 299
AccBSI CCGCTC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 354
AccII CGCG 4 cut(s) 14, 72, 260, 308
AciI CCGC 2 cut(s) 240, 260
AclWI GGATC 2 cut(s) 120, 321
AcyI GRCGYC 1 cut(s) 296
AfaI GTAC 1 cut(s) 254
AgsI TTSAA 2 cut(s) 194, 214
AluBI AGCT 2 cut(s) 160, 178
AluI AGCT 2 cut(s) 160, 178
Alw26I GTCTC 1 cut(s) 294
AlwI GGATC 2 cut(s) 120, 321
ApeKI GCWGC 2 cut(s) 85, 126
AspLEI GCGC 2 cut(s) 16, 260
AsuHPI GGTGA 1 cut(s) 48
BauI CACGAG 1 cut(s) 49
BbsI GAAGAC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 72, 138
BccI CCATC 1 cut(s) 356
BcoDI GTCTC 1 cut(s) 294
BisI GCNGC 2 cut(s) 86, 127
BlsI GCNGC 2 cut(s) 87, 128
BoxI GACNNNNGTC 2 cut(s) 66, 350
BpiI GAAGAC 1 cut(s) 291
BsaBI GATNNNNATC 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 218
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 187, 217
Bse1I ACTGG 1 cut(s) 114
Bse8I GATNNNNATC 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 218
BseJI GATNNNNATC 1 cut(s) 213
BseNI ACTGG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 170
BseXI GCAGC 2 cut(s) 72, 138
Bsh1236I CGCG 4 cut(s) 14, 72, 260, 308
BsiSI CCGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 294
Bsp143I GATC 3 cut(s) 112, 247, 313
Bsp68I TCGCGA 1 cut(s) 72
BspACI CCGC 2 cut(s) 240, 260
BspFNI CGCG 4 cut(s) 14, 72, 260, 308
BspHI TCATGA 1 cut(s) 316
BspPI GGATC 2 cut(s) 120, 321
BsrBI CCGCTC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 3 cut(s) 112, 247, 313
BssNI GRCGYC 1 cut(s) 296
BssSI CACGAG 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 218
Bst2BI CACGAG 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 296
BstEII GGTNACC 1 cut(s) 54
BstFNI CGCG 4 cut(s) 14, 72, 260, 308
BstHHI GCGC 2 cut(s) 16, 260
BstKTI GATC 3 cut(s) 115, 250, 316
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 3 cut(s) 112, 247, 313
BstPAI GACNNNNGTC 2 cut(s) 66, 350
BstPI GGTNACC 1 cut(s) 54
BstUI CGCG 4 cut(s) 14, 72, 260, 308
BstV1I GCAGC 2 cut(s) 72, 138
BstV2I GAAGAC 1 cut(s) 291
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 107
BtuMI TCGCGA 1 cut(s) 72
CciI TCATGA 1 cut(s) 316
CfoI GCGC 2 cut(s) 16, 260
CseI GACGC 1 cut(s) 297
Csp6I GTAC 1 cut(s) 253
CspCI CAANNNNNGTGG 2 cut(s) 32, 67
CviAII CATG 2 cut(s) 64, 317
CviJI RGCY 7 cut(s) 22, 80, 85, 160, 168, 178, 223
CviKI_1 RGCY 7 cut(s) 22, 80, 85, 160, 168, 178, 223
CviQI GTAC 1 cut(s) 253
DpnI GATC 3 cut(s) 114, 249, 315
DpnII GATC 3 cut(s) 112, 247, 313
DraI TTTAAA 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 218
Eco32I GATATC 1 cut(s) 151
Eco91I GGTNACC 1 cut(s) 54
EcoO65I GGTNACC 1 cut(s) 54
EcoRV GATATC 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 2 cut(s) 67, 320
FaiI YATR 4 cut(s) 65, 231, 267, 318
FatI CATG 2 cut(s) 63, 316
FauI CCCGC 1 cut(s) 247
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 2 cut(s) 86, 127
Fsp4HI GCNGC 2 cut(s) 86, 127
GlaI GCGC 2 cut(s) 15, 259
GluI GCNGC 2 cut(s) 86, 127
HapII CCGG 1 cut(s) 59
HgaI GACGC 1 cut(s) 297
HhaI GCGC 2 cut(s) 16, 260
Hin1I GRCGYC 1 cut(s) 296
Hin1II CATG 2 cut(s) 67, 320
Hin6I GCGC 2 cut(s) 14, 258
HinP1I GCGC 2 cut(s) 14, 258
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HinfI GANTC 3 cut(s) 67, 200, 214
HpaII CCGG 1 cut(s) 59
HphI GGTGA 1 cut(s) 48
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 3 cut(s) 36, 294, 313
Hpy188III TCNNGA 6 cut(s) 71, 139, 206, 245, 317, 343
Hpy8I GTNNAC 1 cut(s) 355
Hpy99I CGWCG 2 cut(s) 313, 356
HpyAV CCTTC 1 cut(s) 128
HpyCH4IV ACGT 1 cut(s) 296
HpySE526I ACGT 1 cut(s) 296
Hsp92I GRCGYC 1 cut(s) 296
Hsp92II CATG 2 cut(s) 67, 320
HspAI GCGC 2 cut(s) 14, 258
Kzo9I GATC 3 cut(s) 112, 247, 313
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 3 cut(s) 72, 95, 219
Lsp1109I GCAGC 2 cut(s) 72, 138
MaeII ACGT 1 cut(s) 296
MaeIII GTNAC 2 cut(s) 54, 136
MalI GATC 3 cut(s) 114, 249, 315
MbiI CCGCTC 1 cut(s) 242
MboI GATC 3 cut(s) 112, 247, 313
MboII GAAGA 2 cut(s) 86, 291
MflI RGATCY 1 cut(s) 112
MlyI GAGTC 1 cut(s) 76
MmeI TCCRAC 2 cut(s) 291, 357
MnlI CCTC 5 cut(s) 33, 42, 70, 132, 148
MseI TTAA 2 cut(s) 162, 368
MspI CCGG 1 cut(s) 59
MvnI CGCG 4 cut(s) 14, 72, 260, 308
NdeII GATC 3 cut(s) 112, 247, 313
NlaIII CATG 2 cut(s) 67, 320
NmuCI GTSAC 2 cut(s) 54, 136
NruI TCGCGA 1 cut(s) 72
PagI TCATGA 1 cut(s) 316
PfeI GAWTC 2 cut(s) 200, 214
PkrI GCNGC 2 cut(s) 87, 128
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
PshAI GACNNNNGTC 2 cut(s) 66, 350
PspEI GGTNACC 1 cut(s) 54
PsuI RGATCY 1 cut(s) 112
RruI TCGCGA 1 cut(s) 72
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SalI GTCGAC 1 cut(s) 353
SaqAI TTAA 2 cut(s) 162, 368
SatI GCNGC 2 cut(s) 86, 127
Sau3AI GATC 3 cut(s) 112, 247, 313
SchI GAGTC 1 cut(s) 76
SetI ASST 5 cut(s) 34, 162, 180, 299, 377
SsiI CCGC 2 cut(s) 240, 260
StyI CCWWGG 1 cut(s) 218
TaiI ACGT 1 cut(s) 299
TaqI TCGA 4 cut(s) 5, 153, 174, 354
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 2 cut(s) 200, 214
Tru1I TTAA 2 cut(s) 162, 368
Tru9I TTAA 2 cut(s) 162, 368
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 2 cut(s) 54, 136
TseI GCWGC 2 cut(s) 85, 126
Tsp45I GTSAC 2 cut(s) 54, 136
TspDTI ATGAA 4 cut(s) 53, 254, 291, 333
TspRI CASTG 1 cut(s) 114
XmiI GTMKAC 1 cut(s) 354
ZraI GACGTC 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.