Rorug05G0570500

Protein of unknown function (DUF1685)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015001
Physical Location & Seq
Reverse (-)
76356603 .. 76357338
736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0570500.1

Sequence Viewer

Length: 624 bp
ATGATAATTAAGACTCTCGACCCTTACCGAAAACTCTCTCTCTCTCTCAAATTCTCTGCATCTGGATTTTCTGTTCTTTCGCGGAGCTCAGAAATTGATGGCTTCTTCGTCGTTGAGATCTTCGTTGACGATAACGGCAGCGGCCGCTGTGAACAATGGCGGAGCTGGAAGGTTCGAGAGGCAGCAACTCCATCCCGCTCGGCAAACGACTTCGTCTGTTCGATTCAAGCCGGCGTCTTCCTCGACCGTGGAGGCTTCGGCCGCGGAATCAGAGGCTTCAAGGTCTTTGTCGTCGTCGTCGACAGCAAAAGCCACGTCGGACTCGGCATCAAGTGCAGCAAGGAGGTTGCTATTGCTATTCTTGGAGCCATTATTGTGGCTAAGCTGTGGGTGATTCCTGTGAGGAGGGGTTACAAGATCGGAAAGCCCCACACCATGCATTGCAAGGTCACCGGAAAGTGTGGCTCTGTTATCGTGGGGATGGTGACTGCTCCTCGTGGTTTTGGTATTGTGGTGGCTAGGGTTCCCAAGAAGGTGTTCCAATTTGCTGGTATTCATGATGTGTTCACTTCATCCAGGGGGTCTACCAAGACTCTCGAAACTTTGTCAAGGTTTGCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

207

Amino Acids

22.49

Weight (kDa)

10.2

Isoelectric Point (pI)

19.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S5 PF00333 90 - 135 3.5e-12 Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C PF03719 152 - 199 5.3e-14 Ribosomal protein S5, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015001)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15590 AT2G15590 AT2G15610 AT4G33985
fragaria_vesca FvH4_2g05911
malus_domestica MD05G1081800.v1.1
prunus_persica Prupe.8G126400_v2.0.a1 Prupe.8G126400_v2.0.a1
pyrus_communis pycom05g07660
rosa_chinensis RchiOBHm_Chr6g0257581
rosa_laevigata RLG00000014703
rosa_rugosa Rorug05G0570500 Rorug05G0571600
rosa_samantha Rh6AG089000 Rh6CG077600
rosa_wichuraiana Rw6G007760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 198
AccI GTMKAC 2 cut(s) 300, 584
AccII CGCG 2 cut(s) 82, 264
AciI CCGC 7 cut(s) 82, 141, 145, 160, 196, 262, 264
AcoI YGGCCR 2 cut(s) 142, 259
AcsI RAATTY 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 234
AgsI TTSAA 2 cut(s) 227, 280
AjiI CACGTC 1 cut(s) 316
AjnI CCWGG 1 cut(s) 575
AjuI GAANNNNNNNTTGG 2 cut(s) 521, 553
AloI GAACNNNNNNTCC 2 cut(s) 57, 89
AluBI AGCT 3 cut(s) 87, 165, 385
AluI AGCT 3 cut(s) 87, 165, 385
Alw21I GWGCWC 1 cut(s) 89
AoxI GGCC 2 cut(s) 142, 259
ApeKI GCWGC 3 cut(s) 138, 182, 336
ApoI RAATTY 1 cut(s) 50
ArsI GACNNNNNNTTYG 2 cut(s) 300, 332
Asp700I GAANNNNTTC 1 cut(s) 536
AsuHPI GGTGA 3 cut(s) 403, 442, 496
BanII GRGCYC 1 cut(s) 89
BauI CACGAG 1 cut(s) 495
BbsI GAAGAC 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 89
BbvI GCAGC 3 cut(s) 150, 194, 348
BccI CCATC 3 cut(s) 92, 199, 475
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 577
BfaI CTAG 1 cut(s) 519
BglII AGATCT 1 cut(s) 117
BisI GCNGC 6 cut(s) 139, 142, 145, 183, 262, 337
BlpI GCTNAGC 1 cut(s) 381
BlsI GCNGC 6 cut(s) 140, 143, 146, 184, 263, 338
Bme1390I CCNGG 1 cut(s) 577
BmgBI CACGTC 1 cut(s) 316
BmiI GGNNCC 2 cut(s) 367, 525
BmrFI CCNGG 1 cut(s) 577
BmsI GCATC 2 cut(s) 68, 336
BpiI GAAGAC 1 cut(s) 229
Bpu1102I GCTNAGC 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 3 cut(s) 247, 262, 576
BsaWI WCCGGW 1 cut(s) 452
Bse118I RCCGGY 1 cut(s) 230
Bse3DI GCAATG 1 cut(s) 439
BseBI CCWGG 1 cut(s) 577
BseDI CCNNGG 3 cut(s) 247, 262, 576
BseGI GGATG 3 cut(s) 191, 486, 572
BseMI GCAATG 1 cut(s) 439
BseMII CTCAG 1 cut(s) 102
BseRI GAGGAG 2 cut(s) 418, 483
BseX3I CGGCCG 2 cut(s) 142, 259
BseXI GCAGC 3 cut(s) 150, 194, 348
BsgI GTGCAG 1 cut(s) 355
Bsh1236I CGCG 2 cut(s) 82, 264
Bsh1285I CGRYCG 3 cut(s) 145, 247, 262
BshFI GGCC 2 cut(s) 144, 261
BsiEI CGRYCG 3 cut(s) 145, 247, 262
BsiHKAI GWGCWC 1 cut(s) 89
BsiSI CCGG 2 cut(s) 231, 453
BsnI GGCC 2 cut(s) 144, 261
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 2 cut(s) 117, 417
Bsp1720I GCTNAGC 1 cut(s) 381
BspACI CCGC 7 cut(s) 82, 141, 145, 160, 196, 262, 264
BspANI GGCC 2 cut(s) 144, 261
BspCNI CTCAG 1 cut(s) 101
BspFNI CGCG 2 cut(s) 82, 264
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 2 cut(s) 367, 525
BsrBI CCGCTC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 439
BsrFI RCCGGY 1 cut(s) 230
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 3 cut(s) 247, 262, 576
BssMI GATC 2 cut(s) 117, 417
BssNI GRCGYC 1 cut(s) 234
BssSI CACGAG 1 cut(s) 495
Bst2BI CACGAG 1 cut(s) 495
Bst2UI CCWGG 1 cut(s) 577
Bst4CI ACNGT 1 cut(s) 248
BstACI GRCGYC 1 cut(s) 234
BstAPI GCANNNNNTGC 1 cut(s) 333
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 2 cut(s) 88, 381
BstDSI CCRYGG 2 cut(s) 247, 262
BstEII GGTNACC 1 cut(s) 448
BstF5I GGATG 3 cut(s) 191, 486, 572
BstFNI CGCG 2 cut(s) 82, 264
BstKTI GATC 2 cut(s) 120, 420
BstMBI GATC 2 cut(s) 117, 417
BstMCI CGRYCG 3 cut(s) 145, 247, 262
BstMWI GCNNNNNNNGC 3 cut(s) 144, 261, 333
BstNI CCWGG 1 cut(s) 577
BstPI GGTNACC 1 cut(s) 448
BstSCI CCNGG 1 cut(s) 575
BstUI CGCG 2 cut(s) 82, 264
BstV1I GCAGC 3 cut(s) 150, 194, 348
BstV2I GAAGAC 1 cut(s) 229
BstX2I RGATCY 1 cut(s) 117
BstXI CCANNNNNNTGG 2 cut(s) 376, 548
BstYI RGATCY 1 cut(s) 117
BstZI CGGCCG 2 cut(s) 142, 259
BsuRI GGCC 2 cut(s) 144, 261
BtgI CCRYGG 2 cut(s) 247, 262
BtrI CACGTC 1 cut(s) 316
BtsCI GGATG 3 cut(s) 191, 486, 572
Cac8I GCNNGC 1 cut(s) 232
CciI TCATGA 1 cut(s) 556
CciNI GCGGCCGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 230
Cfr42I CCGCGG 1 cut(s) 265
CseI GACGC 1 cut(s) 223
CviAII CATG 2 cut(s) 436, 557
DdeI CTNAG 2 cut(s) 88, 381
DpnI GATC 2 cut(s) 119, 419
DpnII GATC 2 cut(s) 117, 417
EaeI YGGCCR 2 cut(s) 142, 259
EagI CGGCCG 2 cut(s) 142, 259
EciI GGCGGA 1 cut(s) 175
Ecl136II GAGCTC 1 cut(s) 87
EclXI CGGCCG 2 cut(s) 142, 259
Eco24I GRGCYC 1 cut(s) 89
Eco52I CGGCCG 2 cut(s) 142, 259
Eco53kI GAGCTC 1 cut(s) 87
Eco91I GGTNACC 1 cut(s) 448
EcoICRI GAGCTC 1 cut(s) 87
EcoO65I GGTNACC 1 cut(s) 448
EcoRII CCWGG 1 cut(s) 575
EcoT22I ATGCAT 1 cut(s) 441
EcoT38I GRGCYC 1 cut(s) 89
FaeI CATG 2 cut(s) 439, 560
FaiI YATR 2 cut(s) 437, 558
FalI AAGNNNNNCTT 1 cut(s) 601
FatI CATG 2 cut(s) 435, 556
FauI CCCGC 1 cut(s) 203
FblI GTMKAC 2 cut(s) 300, 584
Fnu4HI GCNGC 6 cut(s) 139, 142, 145, 183, 262, 337
FokI GGATG 3 cut(s) 178, 493, 559
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 6 cut(s) 139, 142, 145, 183, 262, 337
FspBI CTAG 1 cut(s) 519
GluI GCNGC 6 cut(s) 139, 142, 145, 183, 262, 337
HaeIII GGCC 2 cut(s) 144, 261
HapII CCGG 2 cut(s) 231, 453
HgaI GACGC 1 cut(s) 223
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 2 cut(s) 439, 560
HincII GTYRAC 2 cut(s) 127, 301
HindII GTYRAC 2 cut(s) 127, 301
HinfI GANTC 6 cut(s) 13, 223, 267, 321, 394, 592
HpaII CCGG 2 cut(s) 231, 453
HphI GGTGA 3 cut(s) 403, 442, 496
Hpy166II GTNNAC 5 cut(s) 127, 152, 301, 567, 585
Hpy188I TCNGA 4 cut(s) 91, 272, 320, 422
Hpy188III TCNNGA 5 cut(s) 17, 63, 176, 557, 596
Hpy8I GTNNAC 5 cut(s) 127, 152, 301, 567, 585
Hpy99I CGWCG 5 cut(s) 113, 296, 299, 302, 320
HpyAV CCTTC 2 cut(s) 163, 526
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 4 cut(s) 59, 336, 439, 444
HpyF10VI GCNNNNNNNGC 3 cut(s) 144, 261, 333
HpyF3I CTNAG 2 cut(s) 88, 381
HpySE526I ACGT 1 cut(s) 315
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 2 cut(s) 439, 560
KroI GCCGGC 1 cut(s) 230
KroNI GCCGGC 1 cut(s) 232
KspI CCGCGG 1 cut(s) 265
Kzo9I GATC 2 cut(s) 117, 417
LmnI GCTCC 4 cut(s) 84, 162, 365, 496
LpnPI CCDG 8 cut(s) 48, 151, 244, 411, 466, 534, 562, 589
Lsp1109I GCAGC 3 cut(s) 150, 194, 348
LweI GCATC 2 cut(s) 68, 336
MaeI CTAG 1 cut(s) 519
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 3 cut(s) 410, 448, 484
MalI GATC 2 cut(s) 119, 419
MbiI CCGCTC 1 cut(s) 198
MboI GATC 2 cut(s) 117, 417
MboII GAAGA 3 cut(s) 97, 112, 229
MflI RGATCY 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 4 cut(s) 6, 50, 93, 542
MlyI GAGTC 3 cut(s) 7, 315, 586
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 8 cut(s) 172, 245, 251, 266, 337, 396, 399, 504
Mph1103I ATGCAT 1 cut(s) 441
MroNI GCCGGC 1 cut(s) 230
MroXI GAANNNNTTC 1 cut(s) 536
MseI TTAA 2 cut(s) 9, 622
MslI CAYNNNNRTG 1 cut(s) 374
MspA1I CMGCKG 3 cut(s) 141, 147, 264
MspI CCGG 2 cut(s) 231, 453
MspR9I CCNGG 1 cut(s) 577
MvaI CCWGG 1 cut(s) 577
MvnI CGCG 2 cut(s) 82, 264
MwoI GCNNNNNNNGC 3 cut(s) 144, 261, 333
NaeI GCCGGC 1 cut(s) 232
NdeII GATC 2 cut(s) 117, 417
NgoMIV GCCGGC 1 cut(s) 230
NlaIII CATG 2 cut(s) 439, 560
NlaIV GGNNCC 2 cut(s) 367, 525
NmeAIII GCCGAG 2 cut(s) 179, 303
NmuCI GTSAC 2 cut(s) 448, 484
NotI GCGGCCGC 1 cut(s) 142
NsiI ATGCAT 1 cut(s) 441
PagI TCATGA 1 cut(s) 556
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PdiI GCCGGC 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 536
PfeI GAWTC 3 cut(s) 223, 267, 394
PflFI GACNNNGTC 1 cut(s) 212
PkrI GCNGC 6 cut(s) 140, 143, 146, 184, 263, 338
PleI GAGTC 3 cut(s) 7, 315, 586
PpsI GAGTC 3 cut(s) 7, 315, 586
Psp124BI GAGCTC 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 575
PspEI GGTNACC 1 cut(s) 448
PspGI CCWGG 1 cut(s) 575
PspN4I GGNNCC 2 cut(s) 367, 525
PsuI RGATCY 1 cut(s) 117
PsyI GACNNNGTC 1 cut(s) 212
RseI CAYNNNNRTG 1 cut(s) 374
SacI GAGCTC 1 cut(s) 89
SacII CCGCGG 1 cut(s) 265
SalI GTCGAC 1 cut(s) 299
SaqAI TTAA 2 cut(s) 9, 622
SatI GCNGC 6 cut(s) 139, 142, 145, 183, 262, 337
Sau3AI GATC 2 cut(s) 117, 417
SchI GAGTC 3 cut(s) 7, 315, 586
ScrFI CCNGG 1 cut(s) 577
SduI GDGCHC 1 cut(s) 89
SfaNI GCATC 2 cut(s) 68, 336
Sfr303I CCGCGG 1 cut(s) 265
SgrBI CCGCGG 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 374
Sse9I AATT 4 cut(s) 6, 50, 93, 542
SsiI CCGC 7 cut(s) 82, 141, 145, 160, 196, 262, 264
SspMI CTAG 1 cut(s) 519
SstI GAGCTC 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 575
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 1 cut(s) 318
TaqI TCGA 6 cut(s) 18, 175, 221, 243, 300, 597
TasI AATT 4 cut(s) 6, 50, 93, 542
TauI GCSGC 3 cut(s) 144, 147, 264
TfiI GAWTC 3 cut(s) 223, 267, 394
Tru1I TTAA 2 cut(s) 9, 622
Tru9I TTAA 2 cut(s) 9, 622
TseFI GTSAC 2 cut(s) 448, 484
TseI GCWGC 3 cut(s) 138, 182, 336
Tsp45I GTSAC 2 cut(s) 448, 484
TspDTI ATGAA 2 cut(s) 545, 561
Tth111I GACNNNGTC 1 cut(s) 212
XapI RAATTY 1 cut(s) 50
XmiI GTMKAC 2 cut(s) 300, 584
XmnI GAANNNNTTC 1 cut(s) 536
XspI CTAG 1 cut(s) 519
Zsp2I ATGCAT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.