Rh6CG077600

Protein of unknown function (DUF1685)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0015001
Physical Location & Seq
Forward (+)
8132631 .. 8138295
5665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG077600.1

Sequence Viewer

Length: 552 bp
ATGAAGTTGGTAAGGGACGTCTCATTGGGGGAAGATGCAGTGATTAGAGTGCCTAAACGGCAGTGCTTGGTGAATTTGCAGAACAATTCTGTGGCAACACCACCAGTGGCGGCGATTGATAACAGTATGGATGTGGTCATCATTGAAGAAAAAACACAACTGCAATTTGGTCTGTTGACGACAGCAGACTCCGCTGATCTGGCAGACGCTGACAGTTATAGTTCACAGCAGTTGAGTTCAGAGCCTTGTGGTGGATCCGAGGATTGTGGAAAAGCGATTAGTCTCAACTGCAGCCAAAGCGTTTCAGACGATGACTTGGAGGAACTGAAAGCCTGCATTGAGCTGGGATTCAGGTTTGATTCACTAGAAATCGACCCCAAACTCTGCCACACCATACCTAAATTGGAGTCTTACCATGCTTTAAACAAGCAGCAGTTCAGTAAAAGCGTATCAACAGAAGGGGATGATGTGGAGGTGGTGAAGATGAGGTTAAAGCAGTGGGCGCAATTGGTTGCCTGTGCGGTTCGGGAATCATCTTCTTCCAGGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

183

Amino Acids

20.01

Weight (kDa)

4.67

Isoelectric Point (pI)

62.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 101 - 151 1.3e-17 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015001)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15590 AT2G15590 AT2G15610 AT4G33985
fragaria_vesca FvH4_2g05911
malus_domestica MD05G1081800.v1.1
prunus_persica Prupe.8G126400_v2.0.a1 Prupe.8G126400_v2.0.a1
pyrus_communis pycom05g07660
rosa_chinensis RchiOBHm_Chr6g0257581
rosa_laevigata RLG00000014703
rosa_rugosa Rorug05G0570500 Rorug05G0571600
rosa_samantha Rh6AG089000 Rh6CG077600
rosa_wichuraiana Rw6G007760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 21
AciI CCGC 3 cut(s) 110, 192, 521
AclWI GGATC 2 cut(s) 249, 262
AcsI RAATTY 1 cut(s) 73
AcyI GRCGYC 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 1 cut(s) 146
AjnI CCWGG 1 cut(s) 542
AluBI AGCT 1 cut(s) 343
AluI AGCT 1 cut(s) 343
Alw26I GTCTC 2 cut(s) 25, 287
AlwI GGATC 2 cut(s) 249, 262
AlwNI CAGNNNCTG 1 cut(s) 209
ApeKI GCWGC 2 cut(s) 291, 430
ApoI RAATTY 1 cut(s) 73
AspLEI GCGC 1 cut(s) 505
AsuHPI GGTGA 2 cut(s) 82, 490
BamHI GGATCC 1 cut(s) 254
BbvI GCAGC 2 cut(s) 303, 442
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 544
BcoDI GTCTC 2 cut(s) 25, 287
BfaI CTAG 1 cut(s) 365
BfmI CTRYAG 1 cut(s) 289
BglI GCCNNNNNGGC 1 cut(s) 58
BisI GCNGC 3 cut(s) 111, 292, 431
BlsI GCNGC 3 cut(s) 112, 293, 432
Bme1390I CCNGG 1 cut(s) 544
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 544
BmsI GCATC 1 cut(s) 25
BsaHI GRCGYC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 104
BseBI CCWGG 1 cut(s) 544
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 2 cut(s) 136, 469
BseLI CCNNNNNNNGG 1 cut(s) 251
BseNI ACTGG 1 cut(s) 104
BseXI GCAGC 2 cut(s) 303, 442
BseYI CCCAGC 1 cut(s) 343
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 2 cut(s) 25, 287
BsmBI CGTCTC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 29
Bsp143I GATC 2 cut(s) 196, 254
BspACI CCGC 3 cut(s) 110, 192, 521
BspLI GGNNCC 1 cut(s) 256
BspMAI CTGCAG 1 cut(s) 293
BspPI GGATC 2 cut(s) 249, 262
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 2 cut(s) 196, 254
BssNI GRCGYC 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 544
Bst4CI ACNGT 2 cut(s) 125, 215
BstACI GRCGYC 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 334
BstF5I GGATG 2 cut(s) 136, 469
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 2 cut(s) 199, 257
BstMAI GTCTC 2 cut(s) 25, 287
BstMBI GATC 2 cut(s) 196, 254
BstMWI GCNNNNNNNGC 5 cut(s) 58, 191, 200, 297, 502
BstNI CCWGG 1 cut(s) 544
BstSCI CCNGG 1 cut(s) 542
BstSFI CTRYAG 1 cut(s) 289
BstV1I GCAGC 2 cut(s) 303, 442
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BtsCI GGATG 2 cut(s) 136, 469
BtsI GCAGTG 3 cut(s) 45, 68, 503
BtsIMutI CAGTG 4 cut(s) 45, 68, 111, 503
Cac8I GCNNGC 1 cut(s) 334
CaiI CAGNNNCTG 1 cut(s) 209
CfoI GCGC 1 cut(s) 505
CseI GACGC 1 cut(s) 215
CviAII CATG 1 cut(s) 416
CviJI RGCY 4 cut(s) 244, 294, 332, 343
CviKI_1 RGCY 4 cut(s) 244, 294, 332, 343
DpnI GATC 2 cut(s) 198, 256
DpnII GATC 2 cut(s) 196, 254
DraI TTTAAA 1 cut(s) 423
EcoRII CCWGG 1 cut(s) 542
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 1 cut(s) 419
FaiI YATR 4 cut(s) 128, 219, 395, 417
FaqI GGGAC 1 cut(s) 29
FatI CATG 1 cut(s) 415
Fnu4HI GCNGC 3 cut(s) 111, 292, 431
FokI GGATG 2 cut(s) 143, 476
Fsp4HI GCNGC 3 cut(s) 111, 292, 431
FspBI CTAG 1 cut(s) 365
GlaI GCGC 1 cut(s) 504
GluI GCNGC 3 cut(s) 111, 292, 431
GsaI CCCAGC 1 cut(s) 347
HgaI GACGC 1 cut(s) 215
HhaI GCGC 1 cut(s) 505
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 1 cut(s) 419
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HinfI GANTC 5 cut(s) 188, 348, 359, 407, 530
HphI GGTGA 2 cut(s) 82, 490
Hpy166II GTNNAC 2 cut(s) 177, 224
Hpy188I TCNGA 3 cut(s) 241, 259, 307
Hpy188III TCNNGA 1 cut(s) 527
Hpy8I GTNNAC 2 cut(s) 177, 224
HpyAV CCTTC 1 cut(s) 452
HpyCH4III ACNGT 2 cut(s) 125, 215
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 5 cut(s) 38, 79, 163, 291, 336
HpyF10VI GCNNNNNNNGC 5 cut(s) 58, 191, 200, 297, 502
HpySE526I ACGT 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 1 cut(s) 419
HspAI GCGC 1 cut(s) 503
Kzo9I GATC 2 cut(s) 196, 254
LpnPI CCDG 7 cut(s) 117, 185, 329, 337, 346, 529, 529
Lsp1109I GCAGC 2 cut(s) 303, 442
LweI GCATC 1 cut(s) 25
MaeI CTAG 1 cut(s) 365
MaeII ACGT 1 cut(s) 18
MalI GATC 2 cut(s) 198, 256
MboI GATC 2 cut(s) 196, 254
MboII GAAGA 5 cut(s) 44, 158, 493, 528, 531
MfeI CAATTG 1 cut(s) 506
MflI RGATCY 1 cut(s) 254
MluCI AATT 5 cut(s) 73, 85, 164, 401, 506
MlyI GAGTC 2 cut(s) 182, 416
MnlI CCTC 4 cut(s) 253, 313, 466, 480
MseI TTAA 2 cut(s) 422, 491
MspA1I CMGCKG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 544
MunI CAATTG 1 cut(s) 506
MvaI CCWGG 1 cut(s) 544
MwoI GCNNNNNNNGC 5 cut(s) 58, 191, 200, 297, 502
NdeII GATC 2 cut(s) 196, 254
NlaIII CATG 1 cut(s) 419
NlaIV GGNNCC 1 cut(s) 256
PfeI GAWTC 3 cut(s) 348, 359, 530
PfoI TCCNGGA 1 cut(s) 542
PkrI GCNGC 3 cut(s) 112, 293, 432
PleI GAGTC 2 cut(s) 182, 415
PpsI GAGTC 2 cut(s) 182, 415
Psp6I CCWGG 1 cut(s) 542
PspFI CCCAGC 1 cut(s) 343
PspGI CCWGG 1 cut(s) 542
PspN4I GGNNCC 1 cut(s) 256
PstI CTGCAG 1 cut(s) 293
PstNI CAGNNNCTG 1 cut(s) 209
PsuI RGATCY 1 cut(s) 254
SaqAI TTAA 2 cut(s) 422, 491
SatI GCNGC 3 cut(s) 111, 292, 431
Sau3AI GATC 2 cut(s) 196, 254
SchI GAGTC 2 cut(s) 182, 416
ScrFI CCNGG 1 cut(s) 544
SetI ASST 6 cut(s) 21, 345, 356, 400, 477, 491
SfaNI GCATC 1 cut(s) 25
SfcI CTRYAG 1 cut(s) 289
Sse9I AATT 5 cut(s) 73, 85, 164, 401, 506
SsiI CCGC 3 cut(s) 110, 192, 521
SspMI CTAG 1 cut(s) 365
StyD4I CCNGG 1 cut(s) 542
TaaI ACNGT 2 cut(s) 125, 215
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 372
TasI AATT 5 cut(s) 73, 85, 164, 401, 506
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 3 cut(s) 348, 359, 530
Tru1I TTAA 2 cut(s) 422, 491
Tru9I TTAA 2 cut(s) 422, 491
TscAI CASTG 4 cut(s) 45, 68, 111, 503
TseI GCWGC 2 cut(s) 291, 430
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 4 cut(s) 45, 68, 111, 503
XapI RAATTY 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
XspI CTAG 1 cut(s) 365
ZraI GACGTC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.