MD05G1081800.v1.1

Protein of unknown function (DUF1685)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0015001
Physical Location & Seq
Reverse (-)
17167703 .. 17168241
539 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1081800.v1.1.491

Sequence Viewer

Length: 384 bp
ATGAAAAACCCCCACGTACCACCGCCTCACCCTCTCTACAAGCACAATTCGTGGTCGCCCGACACGATCCGGGAAGAGACGTGGCAGCGTCGAAAGAGCATTTCTGGCACGCGCCGCCTTGTTCGTAGCAAAAGCGTTTCCGACGATGATTTGGAGGAGCTGAAGGCCTGTATTGAGCTCGGATTCGGGTTCGATTTACCCGACGTCGACCGGAAACTATCCGATACTTTACCTGCTTTGGAGTTTTACCACGATGTAAATAAGCAGTGCAGTAAGAGCTTGTTAACAGACGGTGGCGATGCGGAGGAGATGAAGACGAGATTGCGGCAGTGGGCCAAGTTGGTCGCTTGCTCGGTTCGGGAATCATCGTCTTCTTCCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

128

Amino Acids

14.5

Weight (kDa)

6.9

Isoelectric Point (pI)

63.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 46 - 93 1.6e-21 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015001)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15590 AT2G15590 AT2G15610 AT4G33985
fragaria_vesca FvH4_2g05911
malus_domestica MD05G1081800.v1.1
prunus_persica Prupe.8G126400_v2.0.a1 Prupe.8G126400_v2.0.a1
pyrus_communis pycom05g07660
rosa_chinensis RchiOBHm_Chr6g0257581
rosa_laevigata RLG00000014703
rosa_rugosa Rorug05G0570500 Rorug05G0571600
rosa_samantha Rh6AG089000 Rh6CG077600
rosa_wichuraiana Rw6G007760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 207
Acc36I ACCTGC 1 cut(s) 241
AccI GTMKAC 1 cut(s) 207
AccII CGCG 1 cut(s) 112
AciI CCGC 4 cut(s) 23, 115, 302, 325
AclWI GGATC 1 cut(s) 61
AcuI CTGAAG 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 1 cut(s) 18
AjiI CACGTC 1 cut(s) 81
AluBI AGCT 3 cut(s) 160, 178, 279
AluI AGCT 3 cut(s) 160, 178, 279
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 1 cut(s) 61
AoxI GGCC 2 cut(s) 165, 333
ApeKI GCWGC 1 cut(s) 85
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 333
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 20
BanII GRGCYC 1 cut(s) 180
BbsI GAAGAC 2 cut(s) 320, 363
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 97
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 241
BisI GCNGC 3 cut(s) 86, 115, 326
BlsI GCNGC 3 cut(s) 87, 116, 327
Bme1390I CCNGG 1 cut(s) 71
BmgBI CACGTC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 333
BmrFI CCNGG 1 cut(s) 71
BmsI GCATC 1 cut(s) 289
BpiI GAAGAC 2 cut(s) 320, 363
BpuMI CCSGG 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 204
BsaWI WCCGGW 1 cut(s) 210
BseRI GAGGAG 2 cut(s) 170, 320
BseXI GCAGC 1 cut(s) 97
BsgI GTGCAG 1 cut(s) 289
Bsh1236I CGCG 1 cut(s) 112
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 2 cut(s) 167, 335
BsiEI CGRYCG 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 2 cut(s) 70, 211
BsmAI GTCTC 1 cut(s) 71
BsmBI CGTCTC 1 cut(s) 71
BsnI GGCC 2 cut(s) 167, 335
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 4 cut(s) 23, 115, 302, 325
BspANI GGCC 2 cut(s) 167, 335
BspFNI CGCG 1 cut(s) 112
BspMI ACCTGC 1 cut(s) 241
BspPI GGATC 1 cut(s) 61
BssMI GATC 1 cut(s) 66
BssNI GRCGYC 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 204
BstBAI YACGTR 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 110, 349
BstFNI CGCG 1 cut(s) 112
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 1 cut(s) 66
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 3 cut(s) 105, 114, 276
BstSCI CCNGG 1 cut(s) 69
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 97
BstV2I GAAGAC 2 cut(s) 320, 363
BsuRI GGCC 2 cut(s) 167, 335
BtgZI GCGATG 1 cut(s) 312
BtrI CACGTC 1 cut(s) 81
BtsI GCAGTG 2 cut(s) 272, 335
BtsIMutI CAGTG 2 cut(s) 272, 335
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 2 cut(s) 110, 349
CfoI GCGC 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 333
CseI GACGC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 17
CviJI RGCY 5 cut(s) 160, 167, 178, 279, 335
CviKI_1 RGCY 5 cut(s) 160, 167, 178, 279, 335
CviQI GTAC 1 cut(s) 17
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Ecl136II GAGCTC 1 cut(s) 178
Eco147I AGGCCT 1 cut(s) 167
Eco24I GRGCYC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 180
Esp3I CGTCTC 1 cut(s) 71
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 3 cut(s) 86, 115, 326
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 3 cut(s) 86, 115, 326
GlaI GCGC 1 cut(s) 113
GluI GCNGC 3 cut(s) 86, 115, 326
HaeIII GGCC 2 cut(s) 167, 335
HapII CCGG 2 cut(s) 70, 211
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 114
Hin1I GRCGYC 1 cut(s) 204
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HincII GTYRAC 2 cut(s) 208, 285
HindII GTYRAC 2 cut(s) 208, 285
HinfI GANTC 2 cut(s) 183, 362
HpaI GTTAAC 1 cut(s) 285
HpaII CCGG 2 cut(s) 70, 211
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 2 cut(s) 208, 285
Hpy188I TCNGA 3 cut(s) 142, 182, 223
Hpy188III TCNNGA 1 cut(s) 359
Hpy8I GTNNAC 2 cut(s) 208, 285
Hpy99I CGWCG 4 cut(s) 93, 146, 206, 209
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 3 cut(s) 15, 80, 204
HpyCH4V TGCA 1 cut(s) 270
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 114, 276
HpySE526I ACGT 3 cut(s) 15, 80, 204
Hsp92I GRCGYC 1 cut(s) 204
HspAI GCGC 1 cut(s) 112
KspAI GTTAAC 1 cut(s) 285
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 5 cut(s) 83, 90, 181, 224, 246
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 289
MaeII ACGT 3 cut(s) 15, 80, 204
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 4 cut(s) 86, 325, 363, 366
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 1 cut(s) 46
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 4 cut(s) 36, 42, 148, 298
MseI TTAA 1 cut(s) 284
MspI CCGG 2 cut(s) 70, 211
MspR9I CCNGG 1 cut(s) 71
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 3 cut(s) 105, 114, 276
NciI CCSGG 1 cut(s) 71
NdeII GATC 1 cut(s) 66
PceI AGGCCT 1 cut(s) 167
PcsI WCGNNNNNNNCGW 2 cut(s) 62, 198
PfeI GAWTC 2 cut(s) 183, 362
PfoI TCCNGGA 1 cut(s) 69
PkrI GCNGC 3 cut(s) 87, 116, 327
Ppu21I YACGTR 1 cut(s) 16
Psp124BI GAGCTC 1 cut(s) 180
PspPI GGNCC 1 cut(s) 333
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SacI GAGCTC 1 cut(s) 180
SalI GTCGAC 1 cut(s) 206
SaqAI TTAA 1 cut(s) 284
SatI GCNGC 3 cut(s) 86, 115, 326
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 333
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 1 cut(s) 180
SetI ASST 7 cut(s) 18, 83, 162, 180, 207, 235, 281
SfaNI GCATC 1 cut(s) 289
Sse9I AATT 1 cut(s) 46
SseBI AGGCCT 1 cut(s) 167
SsiI CCGC 4 cut(s) 23, 115, 302, 325
SstI GAGCTC 1 cut(s) 180
StuI AGGCCT 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 3 cut(s) 18, 83, 207
TaqI TCGA 3 cut(s) 91, 192, 207
TasI AATT 1 cut(s) 46
TauI GCSGC 2 cut(s) 117, 328
TfiI GAWTC 2 cut(s) 183, 362
Tru1I TTAA 1 cut(s) 284
Tru9I TTAA 1 cut(s) 284
TscAI CASTG 2 cut(s) 272, 335
TseI GCWGC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 17, 326
TspRI CASTG 2 cut(s) 272, 335
XmiI GTMKAC 1 cut(s) 207
ZraI GACGTC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.