FvH4_2g05911

Protein of unknown function (DUF1685)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015001
Physical Location & Seq
Forward (+)
4906762 .. 4907237
476 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05911.t1

Sequence Viewer

Length: 387 bp
ATGGCCGACCCTCATGCACCTCCGCCTTGGCCTCTCTTCAAGCAGAACTCATGGTCGCCGGACATACTCCGTGAGGAGACATGGCAGCGTCAAAAGAGCAATTGGGGCACACGGAGTCTCAACCGCAGCAAAAGCATTTCAAACGACGACTTGGAGGAACTGAAAGCCTGCATTGAGCTGGGATTCGGGTTTGATTCACCGGAAATTGACCCCAAACTCCGCAACGCCTTACCTGCATTGGAGTCTTACCATGCCTTACATAAGCAGCAGTTCAGTAAAAGCTTATCAACAGAAAGGGATGATGCAGAGGTGGTGAAGATGAGGTTAAAGCAGTGGGCGCTATTGGTTGCCTGTGCGGTCCGGGAATCTTCTTCTTCCGGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

129

Amino Acids

14.63

Weight (kDa)

6.83

Isoelectric Point (pI)

70.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 47 - 98 4.6e-20 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015001)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15590 AT2G15590 AT2G15610 AT4G33985
fragaria_vesca FvH4_2g05911
malus_domestica MD05G1081800.v1.1
prunus_persica Prupe.8G126400_v2.0.a1 Prupe.8G126400_v2.0.a1
pyrus_communis pycom05g07660
rosa_chinensis RchiOBHm_Chr6g0257581
rosa_laevigata RLG00000014703
rosa_rugosa Rorug05G0570500 Rorug05G0571600
rosa_samantha Rh6AG089000 Rh6CG077600
rosa_wichuraiana Rw6G007760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 241
AccIII TCCGGA 1 cut(s) 377
AciI CCGC 4 cut(s) 23, 124, 220, 356
AcoI YGGCCR 1 cut(s) 3
AgsI TTSAA 2 cut(s) 40, 141
AluBI AGCT 2 cut(s) 178, 282
AluI AGCT 2 cut(s) 178, 282
Alw26I GTCTC 2 cut(s) 71, 122
Aor13HI TCCGGA 1 cut(s) 377
AoxI GGCC 2 cut(s) 3, 29
ApeKI GCWGC 3 cut(s) 85, 126, 265
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 1 cut(s) 358
AsuC2I CCSGG 1 cut(s) 362
AsuHPI GGTGA 2 cut(s) 189, 325
AvaII GGWCC 1 cut(s) 358
BaeGI GKGCMC 1 cut(s) 110
BbvI GCAGC 3 cut(s) 97, 138, 277
BcgI CGANNNNNNTGC 1 cut(s) 30
BcnI CCSGG 1 cut(s) 362
BcoDI GTCTC 2 cut(s) 71, 122
BfoI RGCGCY 1 cut(s) 341
BfuAI ACCTGC 1 cut(s) 241
BisI GCNGC 3 cut(s) 86, 127, 266
BlsI GCNGC 3 cut(s) 87, 128, 267
Bme1390I CCNGG 1 cut(s) 362
Bme18I GGWCC 1 cut(s) 358
BmgT120I GGNCC 1 cut(s) 358
BmrFI CCNGG 1 cut(s) 362
BmsI GCATC 1 cut(s) 292
BpuMI CCSGG 1 cut(s) 362
BsaJI CCNNGG 1 cut(s) 26
BsaWI WCCGGW 2 cut(s) 199, 377
BseAI TCCGGA 1 cut(s) 377
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 304
BseRI GAGGAG 1 cut(s) 89
BseSI GKGCMC 1 cut(s) 110
BseXI GCAGC 3 cut(s) 97, 138, 277
BseYI CCCAGC 1 cut(s) 178
BshFI GGCC 2 cut(s) 5, 31
BsiSI CCGG 4 cut(s) 59, 200, 361, 378
BsmAI GTCTC 2 cut(s) 71, 122
BsnI GGCC 2 cut(s) 5, 31
Bsp1286I GDGCHC 1 cut(s) 110
Bsp13I TCCGGA 1 cut(s) 377
BspACI CCGC 4 cut(s) 23, 124, 220, 356
BspANI GGCC 2 cut(s) 5, 31
BspEI TCCGGA 1 cut(s) 377
BspMI ACCTGC 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 169
BstF5I GGATG 1 cut(s) 304
BstH2I RGCGCY 1 cut(s) 341
BstHHI GCGC 1 cut(s) 340
BstMAI GTCTC 2 cut(s) 71, 122
BstMWI GCNNNNNNNGC 4 cut(s) 105, 132, 233, 337
BstSCI CCNGG 1 cut(s) 360
BstSLI GKGCMC 1 cut(s) 110
BstV1I GCAGC 3 cut(s) 97, 138, 277
BsuRI GGCC 2 cut(s) 5, 31
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 338
BtsIMutI CAGTG 1 cut(s) 338
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 169
CfoI GCGC 1 cut(s) 340
Cfr13I GGNCC 1 cut(s) 358
CpoI CGGWCCG 1 cut(s) 358
CseI GACGC 1 cut(s) 77
CspI CGGWCCG 1 cut(s) 358
CviAII CATG 4 cut(s) 14, 51, 81, 251
CviJI RGCY 5 cut(s) 5, 31, 167, 178, 282
CviKI_1 RGCY 5 cut(s) 5, 31, 167, 178, 282
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
EciI GGCGGA 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 4 cut(s) 17, 54, 84, 254
FaiI YATR 6 cut(s) 15, 52, 65, 82, 252, 261
FatI CATG 4 cut(s) 13, 50, 80, 250
Fnu4HI GCNGC 3 cut(s) 86, 127, 266
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 3 cut(s) 86, 127, 266
GlaI GCGC 1 cut(s) 339
GluI GCNGC 3 cut(s) 86, 127, 266
GsaI CCCAGC 1 cut(s) 182
HaeII RGCGCY 1 cut(s) 341
HaeIII GGCC 2 cut(s) 5, 31
HapII CCGG 4 cut(s) 59, 200, 361, 378
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 340
Hin1II CATG 4 cut(s) 17, 54, 84, 254
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HindIII AAGCTT 1 cut(s) 280
HinfI GANTC 5 cut(s) 115, 183, 194, 242, 365
HpaII CCGG 4 cut(s) 59, 200, 361, 378
HphI GGTGA 2 cut(s) 189, 325
Hpy188III TCNNGA 1 cut(s) 378
Hpy99I CGWCG 1 cut(s) 149
HpyCH4V TGCA 4 cut(s) 17, 171, 236, 305
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 132, 233, 337
Hsp92II CATG 4 cut(s) 17, 54, 84, 254
HspAI GCGC 1 cut(s) 338
Kpn2I TCCGGA 1 cut(s) 377
LpnPI CCDG 7 cut(s) 72, 164, 181, 213, 246, 364, 374
Lsp1109I GCAGC 3 cut(s) 97, 138, 277
LweI GCATC 1 cut(s) 292
MboII GAAGA 5 cut(s) 28, 328, 360, 363, 366
MfeI CAATTG 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 2 cut(s) 100, 204
MlyI GAGTC 2 cut(s) 124, 251
MnlI CCTC 7 cut(s) 21, 30, 42, 67, 148, 301, 315
MroI TCCGGA 1 cut(s) 377
MseI TTAA 1 cut(s) 326
MspI CCGG 4 cut(s) 59, 200, 361, 378
MspR9I CCNGG 1 cut(s) 362
MunI CAATTG 1 cut(s) 100
MwoI GCNNNNNNNGC 4 cut(s) 105, 132, 233, 337
NciI CCSGG 1 cut(s) 362
NlaIII CATG 4 cut(s) 17, 54, 84, 254
PfeI GAWTC 3 cut(s) 183, 194, 365
PfoI TCCNGGA 1 cut(s) 360
PkrI GCNGC 3 cut(s) 87, 128, 267
PleI GAGTC 2 cut(s) 123, 250
PpsI GAGTC 2 cut(s) 123, 250
PspFI CCCAGC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 358
Rsr2I CGGWCCG 1 cut(s) 358
RsrII CGGWCCG 1 cut(s) 358
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 3 cut(s) 86, 127, 266
Sau96I GGNCC 1 cut(s) 358
SchI GAGTC 2 cut(s) 124, 251
ScrFI CCNGG 1 cut(s) 362
SduI GDGCHC 1 cut(s) 110
SetI ASST 6 cut(s) 22, 180, 235, 284, 312, 326
SfaNI GCATC 1 cut(s) 292
SinI GGWCC 1 cut(s) 358
Sse9I AATT 2 cut(s) 100, 204
SsiI CCGC 4 cut(s) 23, 124, 220, 356
StyD4I CCNGG 1 cut(s) 360
StyI CCWWGG 1 cut(s) 26
TasI AATT 2 cut(s) 100, 204
TfiI GAWTC 3 cut(s) 183, 194, 365
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TscAI CASTG 1 cut(s) 338
TseI GCWGC 3 cut(s) 85, 126, 265
TspGWI ACGGA 2 cut(s) 59, 127
TspRI CASTG 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.