Rh6AG089000

Protein of unknown function (DUF1685)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0015001
Physical Location & Seq
Forward (+)
13220958 .. 13226210
5253 bp
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UTR
Exon/CDS
Intron
Rh6AG089000.1

Sequence Viewer

Length: 348 bp
ATGACCAAGATTCAAAAGCCTAGCCTTGAGGGTGGTGGTATAACCAACCTTGCTGAAGGACAGAAAGTAGATTGTTTACTTTCTAGACGGGGTTTCAAGATGGACGATGACTTGGAGGAACTGAAAGCCTGCATTGAGCTGGGATTCAGGTTTGATTCACTAGAAATCGACCCCAAACTCTGCCACACCATACCTAAATTGGAGTCTTACCATGCTTTAAACAAGCAGCAGTTCAGTAAAAGCGTATCAACAGAAGGGGATGATGTGGAGGTGGTGAAGATGAGGTTAAAGCAGTGGGCGCAATTGGTTGCCTGTGCGGTTCGGGAATCATCTTCTTCCAGGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

115

Amino Acids

12.96

Weight (kDa)

6.73

Isoelectric Point (pI)

60.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 35 - 83 1.7e-17 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015001)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15590 AT2G15590 AT2G15610 AT4G33985
fragaria_vesca FvH4_2g05911
malus_domestica MD05G1081800.v1.1
prunus_persica Prupe.8G126400_v2.0.a1 Prupe.8G126400_v2.0.a1
pyrus_communis pycom05g07660
rosa_chinensis RchiOBHm_Chr6g0257581
rosa_laevigata RLG00000014703
rosa_rugosa Rorug05G0570500 Rorug05G0571600
rosa_samantha Rh6AG089000 Rh6CG077600
rosa_wichuraiana Rw6G007760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 317
AcuI CTGAAG 1 cut(s) 75
AgsI TTSAA 2 cut(s) 14, 97
AjnI CCWGG 1 cut(s) 338
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 226
AspLEI GCGC 1 cut(s) 301
AsuHPI GGTGA 1 cut(s) 286
BbvI GCAGC 1 cut(s) 238
BccI CCATC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 340
BfaI CTAG 3 cut(s) 21, 84, 161
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme1390I CCNGG 1 cut(s) 340
BmrFI CCNGG 1 cut(s) 340
BpuEI CTTGAG 1 cut(s) 47
BseBI CCWGG 1 cut(s) 340
BseGI GGATG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 238
BseYI CCCAGC 1 cut(s) 139
BspACI CCGC 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 130
BstF5I GGATG 1 cut(s) 265
BstHHI GCGC 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstNI CCWGG 1 cut(s) 340
BstSCI CCNGG 1 cut(s) 338
BstV1I GCAGC 1 cut(s) 238
BtsCI GGATG 1 cut(s) 265
BtsI GCAGTG 1 cut(s) 299
BtsIMutI CAGTG 1 cut(s) 299
Cac8I GCNNGC 1 cut(s) 130
CfoI GCGC 1 cut(s) 301
CviAII CATG 1 cut(s) 212
CviJI RGCY 4 cut(s) 19, 24, 128, 139
CviKI_1 RGCY 4 cut(s) 19, 24, 128, 139
DraI TTTAAA 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 338
FaeI CATG 1 cut(s) 215
FaiI YATR 3 cut(s) 41, 191, 213
FatI CATG 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 227
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 227
FspBI CTAG 3 cut(s) 21, 84, 161
GlaI GCGC 1 cut(s) 300
GluI GCNGC 1 cut(s) 227
GsaI CCCAGC 1 cut(s) 143
HhaI GCGC 1 cut(s) 301
Hin1II CATG 1 cut(s) 215
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HinfI GANTC 5 cut(s) 10, 144, 155, 203, 326
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 1 cut(s) 77
Hpy188III TCNNGA 3 cut(s) 84, 97, 323
Hpy8I GTNNAC 1 cut(s) 77
HpyAV CCTTC 2 cut(s) 50, 248
HpyCH4V TGCA 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
Hsp92II CATG 1 cut(s) 215
HspAI GCGC 1 cut(s) 299
LpnPI CCDG 5 cut(s) 125, 133, 142, 325, 325
Lsp1109I GCAGC 1 cut(s) 238
MaeI CTAG 3 cut(s) 21, 84, 161
MboII GAAGA 3 cut(s) 289, 324, 327
MfeI CAATTG 1 cut(s) 302
MluCI AATT 2 cut(s) 197, 302
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 4 cut(s) 22, 109, 262, 276
MseI TTAA 2 cut(s) 218, 287
MspR9I CCNGG 1 cut(s) 340
MunI CAATTG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 340
MwoI GCNNNNNNNGC 1 cut(s) 298
NlaIII CATG 1 cut(s) 215
PfeI GAWTC 4 cut(s) 10, 144, 155, 326
PfoI TCCNGGA 1 cut(s) 338
PkrI GCNGC 1 cut(s) 228
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 338
PspFI CCCAGC 1 cut(s) 139
PspGI CCWGG 1 cut(s) 338
SaqAI TTAA 2 cut(s) 218, 287
SatI GCNGC 1 cut(s) 227
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 340
SetI ASST 6 cut(s) 51, 141, 152, 196, 273, 287
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 2 cut(s) 197, 302
SsiI CCGC 1 cut(s) 317
SspMI CTAG 3 cut(s) 21, 84, 161
StyD4I CCNGG 1 cut(s) 338
TaqI TCGA 1 cut(s) 168
TasI AATT 2 cut(s) 197, 302
TfiI GAWTC 4 cut(s) 10, 144, 155, 326
Tru1I TTAA 2 cut(s) 218, 287
Tru9I TTAA 2 cut(s) 218, 287
TscAI CASTG 1 cut(s) 299
TseI GCWGC 1 cut(s) 226
TspRI CASTG 1 cut(s) 299
XbaI TCTAGA 1 cut(s) 83
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XspI CTAG 3 cut(s) 21, 84, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.