AT2G15610

Protein of unknown function (DUF1685)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015001
Physical Location & Seq
Forward (+)
6806033 .. 6806764
732 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G15610.1

Sequence Viewer

Length: 462 bp
ATGTCGAACCAAAACAAGCCACAGCCGCCAAAACCTCTGATGAAGCAACAGTCTTTGCCACCAGACATAAACCGCGAAGAGGCTTGGCTGCGAATGAAGAAAAAGCATCCATCGGCCCGTCTTCATCGCAGCAAGAGCTGCGTCACAAACGACGATATCGAGGAGCTCAGAGGCTGCTTCGACCTAGGGTTTGGGTTTGAGCCAGATTCTCTTGACTTTAATCCAAGTCTCTCCAAAACAATCCCAGCTTTGGATTTGTACAGCGCCATTCACAGACAGTACAGCAACCATTTGTCTCGGACATGGTCGTCTACGTCGGAACGTGACGTCAACTCTAGCACCACGACTATCGTCAACAAAGTTATGTCCGAAGAATGGCATTTTTGTAATATAATTGTTAAAAGGCTATTTCAATTAATGTTTCTGTATTTGACTGTTAGTCAAGTGAGGTTTGTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

153

Amino Acids

17.83

Weight (kDa)

9.24

Isoelectric Point (pI)

59.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 48 - 107 1.4e-27 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015001)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15590 AT2G15590 AT2G15610 AT4G33985
fragaria_vesca FvH4_2g05911
malus_domestica MD05G1081800.v1.1
prunus_persica Prupe.8G126400_v2.0.a1 Prupe.8G126400_v2.0.a1
pyrus_communis pycom05g07660
rosa_chinensis RchiOBHm_Chr6g0257581
rosa_laevigata RLG00000014703
rosa_rugosa Rorug05G0570500 Rorug05G0571600
rosa_samantha Rh6AG089000 Rh6CG077600
rosa_wichuraiana Rw6G007760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 307
AatII GACGTC 1 cut(s) 330
AccI GTMKAC 1 cut(s) 311
AccII CGCG 1 cut(s) 75
AciI CCGC 2 cut(s) 26, 73
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 2 cut(s) 260, 281
AfiI CCNNNNNNNGG 3 cut(s) 79, 250, 375
AgsI TTSAA 1 cut(s) 413
AhdI GACNNNNNGTC 1 cut(s) 438
AluBI AGCT 3 cut(s) 138, 166, 248
AluI AGCT 3 cut(s) 138, 166, 248
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 2 cut(s) 233, 300
AlwNI CAGNNNCTG 1 cut(s) 174
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 4 cut(s) 88, 129, 138, 174
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AseI ATTAAT 1 cut(s) 416
AspA2I CCTAGG 1 cut(s) 184
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 115
AvrII CCTAGG 1 cut(s) 184
BanII GRGCYC 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 4 cut(s) 75, 125, 141, 161
BccI CCATC 1 cut(s) 118
BcoDI GTCTC 2 cut(s) 233, 300
BfaI CTAG 2 cut(s) 185, 336
BfoI RGCGCY 1 cut(s) 267
BisI GCNGC 5 cut(s) 26, 89, 130, 139, 175
BlnI CCTAGG 1 cut(s) 184
BlsI GCNGC 5 cut(s) 27, 90, 131, 140, 176
BmeRI GACNNNNNGTC 1 cut(s) 438
BmgT120I GGNCC 1 cut(s) 115
BmsI GCATC 1 cut(s) 115
BoxI GACNNNNGTC 1 cut(s) 350
BpiI GAAGAC 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 184
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 250, 375
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 3 cut(s) 79, 250, 375
BseMII CTCAG 1 cut(s) 181
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 4 cut(s) 75, 125, 141, 161
BseYI CCCAGC 1 cut(s) 244
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 168
BslI CCNNNNNNNGG 3 cut(s) 79, 250, 375
BsmAI GTCTC 2 cut(s) 233, 300
BsnI GGCC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 168
Bsp1407I TGTACA 1 cut(s) 258
BspACI CCGC 2 cut(s) 26, 73
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 180
BspFNI CGCG 1 cut(s) 75
BsrGI TGTACA 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 184
BssNI GRCGYC 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 184
Bst4CI ACNGT 3 cut(s) 51, 279, 436
Bst6I CTCTTC 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 327
BstAPI GCANNNNNTGC 1 cut(s) 138
BstAUI TGTACA 1 cut(s) 258
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 106
BstFNI CGCG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 1 cut(s) 266
BstMAI GTCTC 2 cut(s) 233, 300
BstMWI GCNNNNNNNGC 3 cut(s) 25, 135, 138
BstPAI GACNNNNGTC 1 cut(s) 350
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 4 cut(s) 75, 125, 141, 161
BstV2I GAAGAC 1 cut(s) 113
BsuRI GGCC 1 cut(s) 116
BtgZI GCGATG 1 cut(s) 110
BtsCI GGATG 1 cut(s) 106
CaiI CAGNNNCTG 1 cut(s) 174
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 115
CseI GACGC 1 cut(s) 130
Csp6I GTAC 2 cut(s) 259, 280
CviAII CATG 1 cut(s) 303
CviQI GTAC 2 cut(s) 259, 280
DdeI CTNAG 1 cut(s) 167
DrdI GACNNNNNNGTC 1 cut(s) 307
DriI GACNNNNNGTC 1 cut(s) 438
DseDI GACNNNNNNGTC 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 72
Eam1105I GACNNNNNGTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 168
Eco32I GATATC 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 166
EcoICRI GAGCTC 1 cut(s) 166
EcoRV GATATC 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 1 cut(s) 306
FaiI YATR 4 cut(s) 68, 304, 365, 392
FatI CATG 1 cut(s) 302
FblI GTMKAC 1 cut(s) 311
Fnu4HI GCNGC 5 cut(s) 26, 89, 130, 139, 175
FokI GGATG 1 cut(s) 93
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 5 cut(s) 26, 89, 130, 139, 175
FspBI CTAG 2 cut(s) 185, 336
GlaI GCGC 1 cut(s) 265
GluI GCNGC 5 cut(s) 26, 89, 130, 139, 175
GsaI CCCAGC 1 cut(s) 248
HaeII RGCGCY 1 cut(s) 267
HaeIII GGCC 1 cut(s) 116
HgaI GACGC 1 cut(s) 130
HhaI GCGC 1 cut(s) 266
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 1 cut(s) 306
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HincII GTYRAC 2 cut(s) 331, 355
HindII GTYRAC 2 cut(s) 331, 355
HinfI GANTC 1 cut(s) 206
Hpy166II GTNNAC 3 cut(s) 312, 331, 355
Hpy188I TCNGA 5 cut(s) 39, 170, 300, 319, 370
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 3 cut(s) 312, 331, 355
Hpy99I CGWCG 2 cut(s) 155, 319
HpyCH4III ACNGT 3 cut(s) 51, 279, 436
HpyCH4IV ACGT 3 cut(s) 314, 322, 327
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 135, 138
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 3 cut(s) 314, 322, 327
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 1 cut(s) 306
HspAI GCGC 1 cut(s) 264
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 3 cut(s) 75, 216, 258
Lsp1109I GCAGC 4 cut(s) 75, 125, 141, 161
LweI GCATC 1 cut(s) 115
MaeI CTAG 2 cut(s) 185, 336
MaeII ACGT 3 cut(s) 314, 322, 327
MaeIII GTNAC 2 cut(s) 142, 323
MboII GAAGA 4 cut(s) 89, 109, 113, 383
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 2 cut(s) 393, 413
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 5 cut(s) 45, 73, 154, 164, 441
MseI TTAA 3 cut(s) 219, 399, 416
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 3 cut(s) 25, 135, 138
NlaIII CATG 1 cut(s) 306
NmuCI GTSAC 2 cut(s) 142, 323
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PfeI GAWTC 1 cut(s) 206
PflFI GACNNNGTC 1 cut(s) 304
PkrI GCNGC 5 cut(s) 27, 90, 131, 140, 176
PshAI GACNNNNGTC 1 cut(s) 350
PshBI ATTAAT 1 cut(s) 416
Psp124BI GAGCTC 1 cut(s) 168
PspFI CCCAGC 1 cut(s) 244
PspPI GGNCC 1 cut(s) 115
PstNI CAGNNNCTG 1 cut(s) 174
PsyI GACNNNGTC 1 cut(s) 304
RsaI GTAC 2 cut(s) 260, 281
RsaNI GTAC 2 cut(s) 259, 280
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 3 cut(s) 219, 399, 416
SatI GCNGC 5 cut(s) 26, 89, 130, 139, 175
Sau96I GGNCC 1 cut(s) 115
SduI GDGCHC 1 cut(s) 168
SetI ASST 9 cut(s) 37, 140, 168, 186, 250, 317, 325, 330, 452
SfaNI GCATC 1 cut(s) 115
Sse9I AATT 2 cut(s) 393, 413
SsiI CCGC 2 cut(s) 26, 73
SspMI CTAG 2 cut(s) 185, 336
SstI GAGCTC 1 cut(s) 168
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 3 cut(s) 51, 279, 436
TaiI ACGT 3 cut(s) 317, 325, 330
TaqI TCGA 3 cut(s) 5, 159, 180
TasI AATT 2 cut(s) 393, 413
TatI WGTACW 2 cut(s) 258, 279
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 3 cut(s) 219, 399, 416
Tru9I TTAA 3 cut(s) 219, 399, 416
TseFI GTSAC 2 cut(s) 142, 323
TseI GCWGC 4 cut(s) 88, 129, 138, 174
Tsp45I GTSAC 2 cut(s) 142, 323
TspDTI ATGAA 3 cut(s) 56, 110, 113
Tth111I GACNNNGTC 1 cut(s) 304
VspI ATTAAT 1 cut(s) 416
XmaJI CCTAGG 1 cut(s) 184
XmiI GTMKAC 1 cut(s) 311
XspI CTAG 2 cut(s) 185, 336
ZraI GACGTC 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.