RLG00000014703

Protein of unknown function (DUF1685)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015001
Physical Location & Seq
Reverse (-)
56541888 .. 56542365
478 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014703

Sequence Viewer

Length: 387 bp
ATGGCAGACCCTCACGCACCACCGCCTCGACCTCTCTACAAGCAGAACTCGTGGTCGCCGGACATACTCCGTGAGGAGACATGGCAGCGTCAGAAGAGTAATTGGGGCACGCGGACTCTCAACCGCTGCAAAAGCGTTTCAGACGATGACTTGGAGGAACTGAAAGCCTGCATTGAGCTGGGATTCGGGTTTGATTCGCCAGAAATTGACCCCAAACTCTGCCGCACCTTACCTGCATTGGAGTCTTACCATGCTTTAAACAAGCAGCAGTTCGGTAAAAGCGTAACAACAGAAGGGGATGATGCGGAGGTGGTGAAGATGAGGTTAAAGCAGTGGGCGCAATTGGTTGCCTGTGCGGTTCGGGAATCATCTTCTTCCGGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

129

Amino Acids

14.52

Weight (kDa)

6.12

Isoelectric Point (pI)

62.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 46 - 92 1.1e-21 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015001)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15590 AT2G15590 AT2G15610 AT4G33985
fragaria_vesca FvH4_2g05911
malus_domestica MD05G1081800.v1.1
prunus_persica Prupe.8G126400_v2.0.a1 Prupe.8G126400_v2.0.a1
pyrus_communis pycom05g07660
rosa_chinensis RchiOBHm_Chr6g0257581
rosa_laevigata RLG00000014703
rosa_rugosa Rorug05G0570500 Rorug05G0571600
rosa_samantha Rh6AG089000 Rh6CG077600
rosa_wichuraiana Rw6G007760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 241
AccII CGCG 1 cut(s) 112
AccIII TCCGGA 1 cut(s) 377
AciI CCGC 6 cut(s) 23, 112, 124, 223, 305, 356
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 71
Aor13HI TCCGGA 1 cut(s) 377
ApeKI GCWGC 3 cut(s) 85, 126, 265
AspLEI GCGC 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 325
BaeGI GKGCMC 1 cut(s) 110
BauI CACGAG 1 cut(s) 49
BbvI GCAGC 3 cut(s) 97, 113, 277
BcoDI GTCTC 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 241
BisI GCNGC 4 cut(s) 86, 127, 223, 266
BlsI GCNGC 4 cut(s) 87, 128, 224, 267
BmsI GCATC 1 cut(s) 292
BsaWI WCCGGW 1 cut(s) 377
BseAI TCCGGA 1 cut(s) 377
BseGI GGATG 1 cut(s) 304
BseRI GAGGAG 1 cut(s) 89
BseSI GKGCMC 1 cut(s) 110
BseXI GCAGC 3 cut(s) 97, 113, 277
BseYI CCCAGC 1 cut(s) 178
Bsh1236I CGCG 1 cut(s) 112
BsiSI CCGG 2 cut(s) 59, 378
BsmAI GTCTC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 110
Bsp13I TCCGGA 1 cut(s) 377
BspACI CCGC 6 cut(s) 23, 112, 124, 223, 305, 356
BspEI TCCGGA 1 cut(s) 377
BspFNI CGCG 1 cut(s) 112
BspMI ACCTGC 1 cut(s) 241
BssSI CACGAG 1 cut(s) 49
Bst2BI CACGAG 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 89
BstC8I GCNNGC 2 cut(s) 110, 169
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 112
BstHHI GCGC 1 cut(s) 340
BstMAI GTCTC 1 cut(s) 71
BstMWI GCNNNNNNNGC 2 cut(s) 132, 337
BstSLI GKGCMC 1 cut(s) 110
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 3 cut(s) 97, 113, 277
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 338
BtsIMutI CAGTG 1 cut(s) 338
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 2 cut(s) 110, 169
CfoI GCGC 1 cut(s) 340
CseI GACGC 1 cut(s) 77
CviAII CATG 2 cut(s) 81, 251
CviJI RGCY 2 cut(s) 167, 178
CviKI_1 RGCY 2 cut(s) 167, 178
DraI TTTAAA 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
FaeI CATG 2 cut(s) 84, 254
FaiI YATR 3 cut(s) 65, 82, 252
FatI CATG 2 cut(s) 80, 250
Fnu4HI GCNGC 4 cut(s) 86, 127, 223, 266
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 4 cut(s) 86, 127, 223, 266
GlaI GCGC 1 cut(s) 339
GluI GCNGC 4 cut(s) 86, 127, 223, 266
GsaI CCCAGC 1 cut(s) 182
HapII CCGG 2 cut(s) 59, 378
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 340
Hin1II CATG 2 cut(s) 84, 254
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HinfI GANTC 5 cut(s) 115, 183, 194, 242, 365
HpaII CCGG 2 cut(s) 59, 378
HphI GGTGA 1 cut(s) 325
Hpy188I TCNGA 2 cut(s) 93, 142
Hpy188III TCNNGA 2 cut(s) 362, 378
HpyAV CCTTC 1 cut(s) 287
HpyCH4V TGCA 3 cut(s) 129, 171, 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 337
Hsp92II CATG 2 cut(s) 84, 254
HspAI GCGC 1 cut(s) 338
Kpn2I TCCGGA 1 cut(s) 377
LpnPI CCDG 6 cut(s) 72, 164, 181, 213, 246, 364
Lsp1109I GCAGC 3 cut(s) 97, 113, 277
LweI GCATC 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 283
MboII GAAGA 4 cut(s) 106, 328, 363, 366
MfeI CAATTG 1 cut(s) 341
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 3 cut(s) 100, 204, 341
MlyI GAGTC 2 cut(s) 109, 251
MnlI CCTC 7 cut(s) 21, 36, 42, 67, 148, 301, 315
MroI TCCGGA 1 cut(s) 377
MseI TTAA 2 cut(s) 257, 326
MspA1I CMGCKG 1 cut(s) 126
MspI CCGG 2 cut(s) 59, 378
MunI CAATTG 1 cut(s) 341
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 2 cut(s) 132, 337
NlaIII CATG 2 cut(s) 84, 254
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PfeI GAWTC 3 cut(s) 183, 194, 365
PkrI GCNGC 4 cut(s) 87, 128, 224, 267
PleI GAGTC 2 cut(s) 109, 250
PpsI GAGTC 2 cut(s) 109, 250
PspFI CCCAGC 1 cut(s) 178
SaqAI TTAA 2 cut(s) 257, 326
SatI GCNGC 4 cut(s) 86, 127, 223, 266
SchI GAGTC 2 cut(s) 109, 251
SduI GDGCHC 1 cut(s) 110
SetI ASST 6 cut(s) 34, 180, 230, 235, 312, 326
SfaNI GCATC 1 cut(s) 292
Sse9I AATT 3 cut(s) 100, 204, 341
SsiI CCGC 6 cut(s) 23, 112, 124, 223, 305, 356
TaqI TCGA 1 cut(s) 28
TasI AATT 3 cut(s) 100, 204, 341
TauI GCSGC 1 cut(s) 225
TfiI GAWTC 3 cut(s) 183, 194, 365
Tru1I TTAA 2 cut(s) 257, 326
Tru9I TTAA 2 cut(s) 257, 326
TscAI CASTG 1 cut(s) 338
TseI GCWGC 3 cut(s) 85, 126, 265
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.