Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011671

Physical Location & Seq

Genomic Coordinates Forward (+)

7200423 .. 7201755

Gene Structure 1333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G16600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCAACAAACCCTAAAGTCTACTTCGACATGACCGTCGGTGGCAAATCCGCCGGTCGTATCGTGATGGAGCTTTACGCCGACACAACACCAGAAACCGCCGAGAATTTCAGAGCACTCTGTACCGGAGAGAGAGGAATCGGTAAACAAGGTAAGCCATTACACTACAAAGGATCAAGCTTTCACCGAGTGATTCCGAAATTCATGTGTCAAGGAGGTGATTTCACAGCCGGGAATGGTACCGGAGGTGAATCTATCTATGGATCGAAGTTCAAAGACGAGAACTTTATCAAGAAACATACAGGACCAGGTATTTTGTCTATGGCTAACGCTGGTGCGAACACGAATGGATCTCAGTTTTTTATTTGTACTGAGAAGACTTCGTGGCTCGATGGGAAACATGTTGTGTTTGGTCAAGTTGTTGAGGGATTGAATGTTGTTAGAGATATTGAGAAGGTTGGATCTGACTCTGGAAGAACTTCTAAGCCTGTTGTCATTGCTGATTGTGGTCAGATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0023052 GO:0030054 GO:0031090 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098588 GO:0098805 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

173

Amino Acids

18.49

Weight (kDa)

8.66

Isoelectric Point (pI)

11.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	8 - 170	1.2e-50	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16600 AT2G16600 AT2G21130 AT4G38740
fragaria_vesca	FvH4_2g01940 FvH4_2g01940
malus_domestica	MD10G1119700.v1.1
prunus_persica	Prupe.8G161100_v2.0.a1
pyrus_communis	pycom05g11090 pycom10g10310
rosa_chinensis	RchiOBHm_Chr6g0245141
rosa_laevigata	RLG00000015322
rosa_roxburghii	Rroxscaffold_7G00215430
rosa_rugosa	Rorug05G0512300
rosa_samantha	Rh6AG027100 Rh6BG023000 Rh6CG021700 Rh6DG021800
rosa_wichuraiana	Rw6G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	35
Acc65I	GGTACC	1 cut(s)	239
AccB1I	GGYRCC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	21
AciI	CCGC	2 cut(s)	51, 99
AclWI	GGATC	4 cut(s)	181, 271, 358, 469
AcsI	RAATTY	2 cut(s)	106, 200
AdeI	CACNNNGTG	1 cut(s)	190
AfaI	GTAC	3 cut(s)	124, 241, 370
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	2 cut(s)	274, 433
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	2 cut(s)	73, 180
AluI	AGCT	2 cut(s)	73, 180
Alw21I	GWGCWC	1 cut(s)	118
AlwI	GGATC	4 cut(s)	181, 271, 358, 469
ApoI	RAATTY	2 cut(s)	106, 200
Asp700I	GAANNNNTTC	1 cut(s)	478
Asp718I	GGTACC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	305
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	3 cut(s)	176, 230, 260
AvaII	GGWCC	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	383
Bbv12I	GWGCWC	1 cut(s)	118
BccI	CCATC	2 cut(s)	61, 386
BciT130I	CCWGG	1 cut(s)	309
BcnI	CCSGG	1 cut(s)	232
Bme1390I	CCNGG	2 cut(s)	232, 309
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	2 cut(s)	232, 309
BpiI	GAAGAC	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	232
BsaWI	WCCGGW	2 cut(s)	125, 242
Bse118I	RCCGGY	1 cut(s)	53
Bse3DI	GCAATG	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	309
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	2 cut(s)	363, 368
Bsh1285I	CGRYCG	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	239
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	4 cut(s)	54, 126, 231, 243
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	4 cut(s)	173, 263, 350, 461
BspACI	CCGC	2 cut(s)	51, 99
BspCNI	CTCAG	2 cut(s)	364, 367
BspLI	GGNNCC	1 cut(s)	241
BspPI	GGATC	4 cut(s)	181, 271, 358, 469
BspT107I	GGYRCC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	495
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssMI	GATC	4 cut(s)	173, 263, 350, 461
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	37
BstDEI	CTNAG	4 cut(s)	354, 372, 483, 519
BstKTI	GATC	4 cut(s)	176, 266, 353, 464
BstMBI	GATC	4 cut(s)	173, 263, 350, 461
BstMCI	CGRYCG	1 cut(s)	58
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	404
BstSCI	CCNGG	2 cut(s)	230, 307
BstV2I	GAAGAC	1 cut(s)	383
BstX2I	RGATCY	2 cut(s)	350, 461
BstYI	RGATCY	2 cut(s)	350, 461
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	305
CsiI	ACCWGGT	1 cut(s)	307
Csp6I	GTAC	3 cut(s)	123, 240, 369
CviAII	CATG	3 cut(s)	31, 205, 401
CviJI	RGCY	7 cut(s)	73, 157, 180, 230, 326, 388, 487
CviKI_1	RGCY	7 cut(s)	73, 157, 180, 230, 326, 388, 487
CviQI	GTAC	3 cut(s)	123, 240, 369
DdeI	CTNAG	4 cut(s)	354, 372, 483, 519
DpnI	GATC	4 cut(s)	175, 265, 352, 463
DpnII	GATC	4 cut(s)	173, 263, 350, 461
DraIII	CACNNNGTG	1 cut(s)	190
DrdI	GACNNNNNNGTC	1 cut(s)	35
DseDI	GACNNNNNNGTC	1 cut(s)	35
EciI	GGCGGA	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	307
FaeI	CATG	3 cut(s)	34, 208, 404
FaiI	YATR	6 cut(s)	32, 206, 261, 300, 323, 402
FatI	CATG	3 cut(s)	30, 204, 400
FblI	GTMKAC	1 cut(s)	21
HapII	CCGG	4 cut(s)	54, 126, 231, 243
Hin1II	CATG	3 cut(s)	34, 208, 404
HindIII	AAGCTT	1 cut(s)	178
HinfI	GANTC	4 cut(s)	138, 193, 251, 467
HpaII	CCGG	4 cut(s)	54, 126, 231, 243
HphI	GGTGA	3 cut(s)	176, 230, 260
Hpy166II	GTNNAC	2 cut(s)	22, 146
Hpy188I	TCNGA	4 cut(s)	113, 198, 466, 513
Hpy188III	TCNNGA	3 cut(s)	64, 292, 471
Hpy8I	GTNNAC	2 cut(s)	22, 146
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	448
HpyCH4III	ACNGT	1 cut(s)	37
HpyF3I	CTNAG	4 cut(s)	354, 372, 483, 519
Hsp92II	CATG	3 cut(s)	34, 208, 404
KpnI	GGTACC	1 cut(s)	243
Kzo9I	GATC	4 cut(s)	173, 263, 350, 461
LmnI	GCTCC	1 cut(s)	70
MabI	ACCWGGT	1 cut(s)	307
MalI	GATC	4 cut(s)	175, 265, 352, 463
MboI	GATC	4 cut(s)	173, 263, 350, 461
MboII	GAAGA	2 cut(s)	388, 486
MflI	RGATCY	2 cut(s)	350, 461
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	2 cut(s)	106, 200
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	4 cut(s)	128, 209, 239, 418
MroXI	GAANNNNTTC	1 cut(s)	478
MspI	CCGG	4 cut(s)	54, 126, 231, 243
MspR9I	CCNGG	2 cut(s)	232, 309
MvaI	CCWGG	1 cut(s)	309
NciI	CCSGG	1 cut(s)	232
NdeII	GATC	4 cut(s)	173, 263, 350, 461
NlaIII	CATG	3 cut(s)	34, 208, 404
NlaIV	GGNNCC	1 cut(s)	241
NmeAIII	GCCGAG	1 cut(s)	127
NspI	RCATGY	1 cut(s)	404
PciI	ACATGT	1 cut(s)	400
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	478
PfeI	GAWTC	3 cut(s)	138, 193, 251
PleI	GAGTC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	461
PscI	ACATGT	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	305
PsuI	RGATCY	2 cut(s)	350, 461
RsaI	GTAC	3 cut(s)	124, 241, 370
RsaNI	GTAC	3 cut(s)	123, 240, 369
Sau3AI	GATC	4 cut(s)	173, 263, 350, 461
Sau96I	GGNCC	1 cut(s)	305
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	2 cut(s)	232, 309
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	7 cut(s)	75, 154, 182, 220, 250, 313, 459
SexAI	ACCWGGT	1 cut(s)	307
SinI	GGWCC	1 cut(s)	305
Sse9I	AATT	2 cut(s)	106, 200
SsiI	CCGC	2 cut(s)	51, 99
StyD4I	CCNGG	2 cut(s)	230, 307
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	3 cut(s)	27, 266, 390
TasI	AATT	2 cut(s)	106, 200
TatI	WGTACW	1 cut(s)	368
TfiI	GAWTC	3 cut(s)	138, 193, 251
TspDTI	ATGAA	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	2 cut(s)	106, 200
XceI	RCATGY	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.