Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0011671

Physical Location & Seq

Genomic Coordinates Reverse (-)

3388989 .. 3390263

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG027100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCCGCTCAAAACCCTAAGGTCTTCTTCGACATGACGATCGGGGGCCAGCCGGCCGGCCGCATCGTCATGGAGCTCTACGCCGACACCACCCCCCGCACCGCCGAGAACTTCCGTGCTCTCTGCACCGGCGAGAAGGGCGTCGGCCGCTCCGGCAAGCCCCTCCACTACAAGGGATCGTCCTTCCACCGTGTGATCCCCGGCTTCATGTGCCAGGGAGGTGACTTCACCGCCGGAAACGGCACCGGAGGCGAGTCGATCTACGGCGCCAAGTTCGCCGACGAGAACTTCGTCAAGAAGCACACCGGCCCCGGCATCCTCTCCATGGCGAATGCCGGCCCCGGCACCAACGGATCTCAGTTCTTCGTCTGTACTGCTAAGACCGAGTGGCTCGACGGCAAGCACGTCGTGTTCGGCCAGGTCGTCGAGGGTCTTGATGTCGTCAAGAACATCGAGAAGGTCGGATCTAGCTCTGGAAGGACCGCCAAGCCTGTTGTGGTCGCTGACTGTGGCCAGCTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

174

Amino Acids

18.26

Weight (kDa)

8.69

Isoelectric Point (pI)

19.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	9 - 171	1.8e-49	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16600 AT2G16600 AT2G21130 AT4G38740
fragaria_vesca	FvH4_2g01940 FvH4_2g01940
malus_domestica	MD10G1119700.v1.1
prunus_persica	Prupe.8G161100_v2.0.a1
pyrus_communis	pycom05g11090 pycom10g10310
rosa_chinensis	RchiOBHm_Chr6g0245141
rosa_laevigata	RLG00000015322
rosa_roxburghii	Rroxscaffold_7G00215430
rosa_rugosa	Rorug05G0512300
rosa_samantha	Rh6AG027100 Rh6BG023000 Rh6CG021700 Rh6DG021800
rosa_wichuraiana	Rw6G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	242, 266, 344
AccBSI	CCGCTC	2 cut(s)	8, 150
AciI	CCGC	7 cut(s)	6, 61, 97, 102, 148, 231, 483
AclWI	GGATC	4 cut(s)	184, 190, 361, 472
AcoI	YGGCCR	6 cut(s)	3, 54, 58, 145, 415, 511
AcyI	GRCGYC	2 cut(s)	141, 267
AdeI	CACNNNGTG	2 cut(s)	193, 409
AfaI	GTAC	1 cut(s)	373
AfiI	CCNNNNNNNGG	2 cut(s)	172, 325
AjiI	CACGTC	1 cut(s)	406
AjnI	CCWGG	2 cut(s)	213, 417
AluBI	AGCT	3 cut(s)	76, 471, 517
AluI	AGCT	3 cut(s)	76, 471, 517
Alw21I	GWGCWC	2 cut(s)	78, 121
AlwI	GGATC	4 cut(s)	184, 190, 361, 472
AoxI	GGCC	9 cut(s)	3, 46, 54, 58, 145, 307, 337, 415, 511
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	4 cut(s)	46, 308, 338, 480
AsuC2I	CCSGG	3 cut(s)	201, 312, 342
AsuHPI	GGTGA	2 cut(s)	220, 233
AvaII	GGWCC	1 cut(s)	480
AxyI	CCTNAGG	1 cut(s)	18
BalI	TGGCCA	1 cut(s)	513
BanI	GGYRCC	3 cut(s)	242, 266, 344
BanII	GRGCYC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	16
Bbv12I	GWGCWC	2 cut(s)	78, 121
BceAI	ACGGC	3 cut(s)	256, 280, 412
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BciT130I	CCWGG	2 cut(s)	215, 419
BcnI	CCSGG	3 cut(s)	201, 312, 342
BfaI	CTAG	1 cut(s)	468
BfoI	RGCGCY	1 cut(s)	270
BglI	GCCNNNNNGGC	1 cut(s)	153
BisI	GCNGC	3 cut(s)	6, 61, 148
BlsI	GCNGC	3 cut(s)	7, 62, 149
Bme1390I	CCNGG	5 cut(s)	201, 215, 312, 342, 419
Bme18I	GGWCC	1 cut(s)	480
BmgBI	CACGTC	1 cut(s)	406
BmgT120I	GGNCC	4 cut(s)	46, 308, 338, 480
BmiI	GGNNCC	6 cut(s)	47, 244, 268, 310, 340, 346
BmrFI	CCNGG	5 cut(s)	201, 215, 312, 342, 419
BmsI	GCATC	2 cut(s)	72, 324
BpiI	GAAGAC	1 cut(s)	16
BpuMI	CCSGG	3 cut(s)	201, 312, 342
BsaHI	GRCGYC	2 cut(s)	141, 267
BsaJI	CCNNGG	5 cut(s)	199, 214, 310, 324, 340
BsaWI	WCCGGW	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 325
Bse118I	RCCGGY	5 cut(s)	52, 56, 128, 305, 335
Bse21I	CCTNAGG	1 cut(s)	18
BseBI	CCWGG	2 cut(s)	215, 419
BseDI	CCNNGG	5 cut(s)	199, 214, 310, 324, 340
BseGI	GGATG	1 cut(s)	315
BseLI	CCNNNNNNNGG	2 cut(s)	172, 325
BseMII	CTCAG	1 cut(s)	371
BseX3I	CGGCCG	3 cut(s)	54, 58, 145
BsgI	GTGCAG	1 cut(s)	109
Bsh1285I	CGRYCG	4 cut(s)	42, 57, 61, 148
BshFI	GGCC	9 cut(s)	5, 48, 56, 60, 147, 309, 339, 417, 513
BshNI	GGYRCC	3 cut(s)	242, 266, 344
BsiEI	CGRYCG	4 cut(s)	42, 57, 61, 148
BsiHKAI	GWGCWC	2 cut(s)	78, 121
BslI	CCNNNNNNNGG	2 cut(s)	172, 325
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	9 cut(s)	5, 48, 56, 60, 147, 309, 339, 417, 513
Bsp1286I	GDGCHC	2 cut(s)	78, 121
Bsp143I	GATC	6 cut(s)	39, 176, 195, 258, 353, 464
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	7 cut(s)	6, 61, 97, 102, 148, 231, 483
BspANI	GGCC	9 cut(s)	5, 48, 56, 60, 147, 309, 339, 417, 513
BspCNI	CTCAG	1 cut(s)	370
BspLI	GGNNCC	6 cut(s)	47, 244, 268, 310, 340, 346
BspPI	GGATC	4 cut(s)	184, 190, 361, 472
BspT107I	GGYRCC	3 cut(s)	242, 266, 344
BsrBI	CCGCTC	2 cut(s)	8, 150
BsrFI	RCCGGY	5 cut(s)	52, 56, 128, 305, 335
BssAI	RCCGGY	5 cut(s)	52, 56, 128, 305, 335
BssECI	CCNNGG	5 cut(s)	199, 214, 310, 324, 340
BssMI	GATC	6 cut(s)	39, 176, 195, 258, 353, 464
BssNI	GRCGYC	2 cut(s)	141, 267
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	2 cut(s)	215, 419
Bst4CI	ACNGT	2 cut(s)	191, 509
BstACI	GRCGYC	2 cut(s)	141, 267
BstC8I	GCNNGC	7 cut(s)	50, 54, 58, 158, 337, 401, 515
BstDEI	CTNAG	4 cut(s)	18, 357, 378, 522
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	315
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	6 cut(s)	42, 179, 198, 261, 356, 467
BstMBI	GATC	6 cut(s)	39, 176, 195, 258, 353, 464
BstMCI	CGRYCG	4 cut(s)	42, 57, 61, 148
BstMWI	GCNNNNNNNGC	6 cut(s)	138, 147, 153, 210, 249, 275
BstNI	CCWGG	2 cut(s)	215, 419
BstSCI	CCNGG	5 cut(s)	199, 213, 310, 340, 417
BstV2I	GAAGAC	1 cut(s)	16
BstX2I	RGATCY	2 cut(s)	353, 464
BstYI	RGATCY	2 cut(s)	353, 464
BstZI	CGGCCG	3 cut(s)	54, 58, 145
Bsu36I	CCTNAGG	1 cut(s)	18
BsuRI	GGCC	9 cut(s)	5, 48, 56, 60, 147, 309, 339, 417, 513
BtgI	CCRYGG	1 cut(s)	324
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	315
Cac8I	GCNNGC	7 cut(s)	50, 54, 58, 158, 337, 401, 515
CfoI	GCGC	1 cut(s)	269
Cfr10I	RCCGGY	5 cut(s)	52, 56, 128, 305, 335
Cfr13I	GGNCC	4 cut(s)	46, 308, 338, 480
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	372
CviAII	CATG	4 cut(s)	34, 70, 208, 325
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	4 cut(s)	18, 357, 378, 522
DinI	GGCGCC	1 cut(s)	268
DpnI	GATC	6 cut(s)	41, 178, 197, 260, 355, 466
DpnII	GATC	6 cut(s)	39, 176, 195, 258, 353, 464
DraIII	CACNNNGTG	2 cut(s)	193, 409
EaeI	YGGCCR	6 cut(s)	3, 54, 58, 145, 415, 511
EagI	CGGCCG	3 cut(s)	54, 58, 145
Ecl136II	GAGCTC	1 cut(s)	76
EclXI	CGGCCG	3 cut(s)	54, 58, 145
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	480
Eco52I	CGGCCG	3 cut(s)	54, 58, 145
Eco53kI	GAGCTC	1 cut(s)	76
Eco81I	CCTNAGG	1 cut(s)	18
EcoICRI	GAGCTC	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	213, 417
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	78
EgeI	GGCGCC	1 cut(s)	268
EheI	GGCGCC	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	4 cut(s)	37, 73, 211, 328
FaiI	YATR	4 cut(s)	35, 71, 209, 326
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FatI	CATG	4 cut(s)	33, 69, 207, 324
FauI	CCCGC	1 cut(s)	104
Fnu4HI	GCNGC	3 cut(s)	6, 61, 148
FokI	GGATG	1 cut(s)	302
FriOI	GRGCYC	1 cut(s)	78
FseI	GGCCGGCC	1 cut(s)	60
Fsp4HI	GCNGC	3 cut(s)	6, 61, 148
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	3 cut(s)	6, 61, 148
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	9 cut(s)	5, 48, 56, 60, 147, 309, 339, 417, 513
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	1 cut(s)	269
Hin1I	GRCGYC	2 cut(s)	141, 267
Hin1II	CATG	4 cut(s)	37, 73, 211, 328
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	1 cut(s)	254
HphI	GGTGA	2 cut(s)	220, 233
Hpy188I	TCNGA	1 cut(s)	464
Hpy188III	TCNNGA	5 cut(s)	295, 434, 445, 454, 474
Hpy99I	CGWCG	5 cut(s)	146, 284, 398, 410, 428
HpyAV	CCTTC	4 cut(s)	130, 193, 451, 471
HpyCH4III	ACNGT	2 cut(s)	191, 509
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	6 cut(s)	138, 147, 153, 210, 249, 275
HpyF3I	CTNAG	4 cut(s)	18, 357, 378, 522
HpySE526I	ACGT	1 cut(s)	405
Hsp92I	GRCGYC	2 cut(s)	141, 267
Hsp92II	CATG	4 cut(s)	37, 73, 211, 328
HspAI	GCGC	1 cut(s)	267
KasI	GGCGCC	1 cut(s)	266
KroI	GCCGGC	3 cut(s)	52, 56, 335
KroNI	GCCGGC	3 cut(s)	54, 58, 337
Kzo9I	GATC	6 cut(s)	39, 176, 195, 258, 353, 464
LmnI	GCTCC	2 cut(s)	73, 155
LweI	GCATC	2 cut(s)	72, 324
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	6 cut(s)	41, 178, 197, 260, 355, 466
MbiI	CCGCTC	2 cut(s)	8, 150
MboI	GATC	6 cut(s)	39, 176, 195, 258, 353, 464
MboII	GAAGA	3 cut(s)	16, 19, 355
MflI	RGATCY	2 cut(s)	353, 464
MhlI	GDGCHC	2 cut(s)	78, 121
MlsI	TGGCCA	1 cut(s)	513
MluNI	TGGCCA	1 cut(s)	513
Mly113I	GGCGCC	1 cut(s)	267
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	442
MnlI	CCTC	5 cut(s)	173, 212, 242, 329, 421
Mox20I	TGGCCA	1 cut(s)	513
MroNI	GCCGGC	3 cut(s)	52, 56, 335
MscI	TGGCCA	1 cut(s)	513
MslI	CAYNNNNRTG	1 cut(s)	68
Msp20I	TGGCCA	1 cut(s)	513
MspR9I	CCNGG	5 cut(s)	201, 215, 312, 342, 419
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	2 cut(s)	215, 419
MwoI	GCNNNNNNNGC	6 cut(s)	138, 147, 153, 210, 249, 275
NaeI	GCCGGC	3 cut(s)	54, 58, 337
NarI	GGCGCC	1 cut(s)	267
NciI	CCSGG	3 cut(s)	201, 312, 342
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	6 cut(s)	39, 176, 195, 258, 353, 464
NgoMIV	GCCGGC	3 cut(s)	52, 56, 335
NlaIII	CATG	4 cut(s)	37, 73, 211, 328
NlaIV	GGNNCC	6 cut(s)	47, 244, 268, 310, 340, 346
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	3 cut(s)	288, 402, 420
PctI	GAATGC	1 cut(s)	337
PdiI	GCCGGC	3 cut(s)	54, 58, 337
PkrI	GCNGC	3 cut(s)	7, 62, 149
Ple19I	CGATCG	1 cut(s)	42
PleI	GAGTC	1 cut(s)	262
PluTI	GGCGCC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	262
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	213, 417
PspGI	CCWGG	2 cut(s)	213, 417
PspN4I	GGNNCC	6 cut(s)	47, 244, 268, 310, 340, 346
PspPI	GGNCC	4 cut(s)	46, 308, 338, 480
PsuI	RGATCY	2 cut(s)	353, 464
PvuI	CGATCG	1 cut(s)	42
RigI	GGCCGGCC	1 cut(s)	60
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
RseI	CAYNNNNRTG	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	78
SatI	GCNGC	3 cut(s)	6, 61, 148
Sau3AI	GATC	6 cut(s)	39, 176, 195, 258, 353, 464
Sau96I	GGNCC	4 cut(s)	46, 308, 338, 480
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	5 cut(s)	201, 215, 312, 342, 419
SduI	GDGCHC	2 cut(s)	78, 121
SetI	ASST	8 cut(s)	24, 78, 223, 408, 423, 462, 473, 519
SfaNI	GCATC	2 cut(s)	72, 324
SfoI	GGCGCC	1 cut(s)	268
SgrAI	CRCCGGYG	1 cut(s)	128
SinI	GGWCC	1 cut(s)	480
SmiMI	CAYNNNNRTG	1 cut(s)	68
SsiI	CCGC	7 cut(s)	6, 61, 97, 102, 148, 231, 483
SspDI	GGCGCC	1 cut(s)	266
SspMI	CTAG	1 cut(s)	468
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	5 cut(s)	199, 213, 310, 340, 417
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	191, 509
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	5 cut(s)	30, 257, 393, 426, 453
TaqII	GACCGA	1 cut(s)	398
TatI	WGTACW	1 cut(s)	371
TauI	GCSGC	3 cut(s)	8, 63, 150
TseFI	GTSAC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	196
TspGWI	ACGGA	2 cut(s)	104, 366
VpaK11BI	GGWCC	1 cut(s)	480
XcmI	CCANNNNNNNNNTGG	1 cut(s)	493
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.