Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011671

Physical Location & Seq

Genomic Coordinates Reverse (-)

9055398 .. 9056481

Gene Structure 1084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCGTCGCATCCTAAAGTTTTCTTCGACATGACCATCGGCGGTGCACCAGCGGGGAAGATCGTGATGGAGCTTTACACCGACAAGACACCAAAGACGGCGGAGAATTTCAGAGCTCTATGCACCGGAGAGAAAGGCGTCGGACGTAGCGGAAAGCCACTTCACTTCAAAGGATCTTCGTTTCACCGCGTGATCCCAAATTTCATGTGCCAAGGAGGAGATTTCACCAAAGGTAACGGAACTGGTGGCGAATCGATCTACGGAGCCAAATTTGAGGATGAGAATTTCGAGAGGAAGCACACAGGACCTGGGATTTTGTCGATGGCTAACGCTGGTGCTAACACTAATGGATCTCAGTTTTTCATCTGTACGGTGAAGACTGATTGGCTTGATGGTAAGCATGTGGTGTTTGGTCAGGTGGTTGAAGGCTTGGACGTTGTTAAGGCTATTGAGAAGATCGGATCTTCTTCTGGAAAGCCGACGAAGCCTGTTGTGATCGCTGATTGTGGTGAGATCTCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0001932 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009735 GO:0009741 GO:0009742 GO:0009755 GO:0009785 GO:0009791 GO:0009987 GO:0010017 GO:0010033 GO:0010035 GO:0010038 GO:0014070 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019220 GO:0019222 GO:0019538 GO:0023052 GO:0030522 GO:0031323 GO:0031399 GO:0032268 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042325 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048046 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071478 GO:0071482 GO:0071483 GO:0071489 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:0104004 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

174

Amino Acids

18.46

Weight (kDa)

8.32

Isoelectric Point (pI)

12.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	8 - 170	5.8e-52	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16600 AT2G16600 AT2G21130 AT4G38740
fragaria_vesca	FvH4_2g01940 FvH4_2g01940
malus_domestica	MD10G1119700.v1.1
prunus_persica	Prupe.8G161100_v2.0.a1
pyrus_communis	pycom05g11090 pycom10g10310
rosa_chinensis	RchiOBHm_Chr6g0245141
rosa_laevigata	RLG00000015322
rosa_roxburghii	Rroxscaffold_7G00215430
rosa_rugosa	Rorug05G0512300
rosa_samantha	Rh6AG027100 Rh6BG023000 Rh6CG021700 Rh6DG021800
rosa_wichuraiana	Rw6G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	189
AciI	CCGC	5 cut(s)	42, 53, 101, 150, 187
AclWI	GGATC	4 cut(s)	181, 187, 358, 469
AcsI	RAATTY	4 cut(s)	106, 199, 269, 283
AcyI	GRCGYC	2 cut(s)	5, 138
AdeI	CACNNNGTG	1 cut(s)	190
AfaI	GTAC	1 cut(s)	370
AgsI	TTSAA	2 cut(s)	169, 425
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	2 cut(s)	73, 116
AluI	AGCT	2 cut(s)	73, 116
Alw21I	GWGCWC	2 cut(s)	49, 118
Alw44I	GTGCAC	1 cut(s)	45
AlwI	GGATC	4 cut(s)	181, 187, 358, 469
AlwNI	CAGNNNCTG	1 cut(s)	308
ApaLI	GTGCAC	1 cut(s)	45
ApoI	RAATTY	4 cut(s)	106, 199, 269, 283
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	4 cut(s)	176, 217, 385, 521
AvaII	GGWCC	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	383
Bbv12I	GWGCWC	2 cut(s)	49, 118
BccI	CCATC	4 cut(s)	44, 61, 316, 386
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	309
BglII	AGATCT	1 cut(s)	513
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	1 cut(s)	19
BpiI	GAAGAC	1 cut(s)	383
Bsa29I	ATCGAT	1 cut(s)	254
BsaHI	GRCGYC	2 cut(s)	5, 138
BsaJI	CCNNGG	2 cut(s)	211, 308
BsaWI	WCCGGW	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	309
BseCI	ATCGAT	1 cut(s)	254
BseDI	CCNNGG	2 cut(s)	211, 308
BseGI	GGATG	2 cut(s)	10, 283
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	49
Bsh1236I	CGCG	1 cut(s)	189
BshVI	ATCGAT	1 cut(s)	254
BsiHKAI	GWGCWC	2 cut(s)	49, 118
BsiSI	CCGG	1 cut(s)	126
Bsp1286I	GDGCHC	2 cut(s)	49, 118
Bsp143I	GATC	9 cut(s)	60, 173, 192, 255, 350, 456, 461, 495, 513
BspACI	CCGC	5 cut(s)	42, 53, 101, 150, 187
BspCNI	CTCAG	1 cut(s)	367
BspDI	ATCGAT	1 cut(s)	254
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	265
BspPI	GGATC	4 cut(s)	181, 187, 358, 469
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	2 cut(s)	211, 308
BssMI	GATC	9 cut(s)	60, 173, 192, 255, 350, 456, 461, 495, 513
BssNI	GRCGYC	2 cut(s)	5, 138
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	373
BstACI	GRCGYC	2 cut(s)	5, 138
BstDEI	CTNAG	2 cut(s)	354, 522
BstF5I	GGATG	2 cut(s)	10, 283
BstFNI	CGCG	1 cut(s)	189
BstKTI	GATC	9 cut(s)	63, 176, 195, 258, 353, 459, 464, 498, 516
BstMBI	GATC	9 cut(s)	60, 173, 192, 255, 350, 456, 461, 495, 513
BstMWI	GCNNNNNNNGC	1 cut(s)	484
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	307
BstSLI	GKGCMC	1 cut(s)	49
BstUI	CGCG	1 cut(s)	189
BstV2I	GAAGAC	1 cut(s)	383
BstX2I	RGATCY	4 cut(s)	173, 350, 461, 513
BstYI	RGATCY	4 cut(s)	173, 350, 461, 513
Bsu15I	ATCGAT	1 cut(s)	254
BsuTUI	ATCGAT	1 cut(s)	254
BtsCI	GGATG	2 cut(s)	10, 283
CaiI	CAGNNNCTG	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	305
ClaI	ATCGAT	1 cut(s)	254
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	369
CviAII	CATG	3 cut(s)	31, 205, 401
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	2 cut(s)	354, 522
DpnI	GATC	9 cut(s)	62, 175, 194, 257, 352, 458, 463, 497, 515
DpnII	GATC	9 cut(s)	60, 173, 192, 255, 350, 456, 461, 495, 513
DraIII	CACNNNGTG	1 cut(s)	190
EciI	GGCGGA	1 cut(s)	116
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	305
Eco53kI	GAGCTC	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	3 cut(s)	34, 208, 404
FaiI	YATR	4 cut(s)	32, 121, 206, 402
FatI	CATG	3 cut(s)	30, 204, 400
FauI	CCCGC	1 cut(s)	46
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	118
HapII	CCGG	1 cut(s)	126
HgaI	GACGC	1 cut(s)	127
Hin1I	GRCGYC	2 cut(s)	5, 138
Hin1II	CATG	3 cut(s)	34, 208, 404
HinfI	GANTC	1 cut(s)	251
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	4 cut(s)	176, 217, 385, 521
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	3 cut(s)	113, 143, 461
Hpy188III	TCNNGA	3 cut(s)	64, 289, 471
Hpy8I	GTNNAC	1 cut(s)	47
Hpy99I	CGWCG	3 cut(s)	10, 143, 484
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	2 cut(s)	145, 435
HpyCH4V	TGCA	2 cut(s)	47, 123
HpyF10VI	GCNNNNNNNGC	1 cut(s)	484
HpyF3I	CTNAG	2 cut(s)	354, 522
HpySE526I	ACGT	2 cut(s)	145, 435
Hsp92I	GRCGYC	2 cut(s)	5, 138
Hsp92II	CATG	3 cut(s)	34, 208, 404
Kzo9I	GATC	9 cut(s)	60, 173, 192, 255, 350, 456, 461, 495, 513
LmnI	GCTCC	2 cut(s)	70, 263
LweI	GCATC	1 cut(s)	19
MaeII	ACGT	2 cut(s)	145, 435
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	9 cut(s)	62, 175, 194, 257, 352, 458, 463, 497, 515
MboI	GATC	9 cut(s)	60, 173, 192, 255, 350, 456, 461, 495, 513
MboII	GAAGA	8 cut(s)	16, 70, 168, 388, 456, 459, 466, 510
MflI	RGATCY	4 cut(s)	173, 350, 461, 513
MhlI	GDGCHC	2 cut(s)	49, 118
MluCI	AATT	4 cut(s)	106, 199, 269, 283
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	3 cut(s)	209, 268, 285
MseI	TTAA	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	309
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	484
NdeII	GATC	9 cut(s)	60, 173, 192, 255, 350, 456, 461, 495, 513
NlaIII	CATG	3 cut(s)	34, 208, 404
NlaIV	GGNNCC	1 cut(s)	265
NspI	RCATGY	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	251
PpuMI	RGGWCCY	1 cut(s)	305
Psp124BI	GAGCTC	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	305
PspPPI	RGGWCCY	1 cut(s)	305
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	4 cut(s)	173, 350, 461, 513
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	441
Sau3AI	GATC	9 cut(s)	60, 173, 192, 255, 350, 456, 461, 495, 513
Sau96I	GGNCC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	2 cut(s)	49, 118
SetI	ASST	7 cut(s)	75, 118, 148, 235, 310, 420, 438
SfaNI	GCATC	1 cut(s)	19
SinI	GGWCC	1 cut(s)	305
Sse9I	AATT	4 cut(s)	106, 199, 269, 283
SsiI	CCGC	5 cut(s)	42, 53, 101, 150, 187
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	2 cut(s)	148, 438
TaqI	TCGA	4 cut(s)	27, 254, 288, 320
TasI	AATT	4 cut(s)	106, 199, 269, 283
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TspDTI	ATGAA	2 cut(s)	193, 352
TspGWI	ACGGA	2 cut(s)	252, 276
VneI	GTGCAC	1 cut(s)	45
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	4 cut(s)	106, 199, 269, 283
XceI	RCATGY	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.