FvH4_2g01940

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011671
Physical Location & Seq
Reverse (-)
1660350 .. 1662349
2000 bp
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UTR
Exon/CDS
Intron
FvH4_2g01940.t1

Sequence Viewer

Length: 525 bp
ATGGCTGCTCAAAACCCTAAGGTGTTCTTCGACATGACGATCGGAGGCCAGCCGGCCGGCCGCATCGTGATGGAGCTCTACGCCGACACCACCCCCCGCACCGCCGAGAACTTCCGTGCTCTCTGCACCGGCGAGAAGGGAACCGGCCGCTCCGGCAAGCCTCTCCACTACAAGGGATCCGCCTTCCACCGTGTGATCCCCGGGTTCATGTGCCAGGGAGGTGACTTCACCGCCGGAAACGGCACCGGAGGCGAGTCGATCTACGGCGCCAAGTTCGCCGACGAGAACTTCGTCAAGAAGCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCGGGCCCCGGGACCAACGGATCTCAGTTCTTCATCTGCACCGCCAAGACTGAGTGGCTCGATGGCAAGCACGTCGTGTTCGGCCAGGTCGTTGAGGGCCTCGATGTCGTCAAGAACATCGAGAAGGTCGGGTCCGGCTCTGGAAGGTGCTCCAAGCCTGTTGTTGTTGCCGACTGTGGCCAGCTCTGTTAG

Protein Analysis

175

Amino Acids

18.27

Weight (kDa)

8.54

Isoelectric Point (pI)

15.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 9 - 171 9.6e-50 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011671)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16600 AT2G16600 AT2G21130 AT4G38740
fragaria_vesca FvH4_2g01940 FvH4_2g01940
malus_domestica MD10G1119700.v1.1
prunus_persica Prupe.8G161100_v2.0.a1
pyrus_communis pycom05g11090 pycom10g10310
rosa_chinensis RchiOBHm_Chr6g0245141
rosa_laevigata RLG00000015322
rosa_roxburghii Rroxscaffold_7G00215430
rosa_rugosa Rorug05G0512300
rosa_samantha Rh6AG027100 Rh6BG023000 Rh6CG021700 Rh6DG021800
rosa_wichuraiana Rw6G002290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 242, 266
AccBSI CCGCTC 1 cut(s) 150
AciI CCGC 8 cut(s) 61, 97, 102, 148, 180, 231, 335, 375
AclWI GGATC 4 cut(s) 171, 184, 190, 361
AcoI YGGCCR 5 cut(s) 54, 58, 145, 415, 511
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 2 cut(s) 193, 409
AfiI CCNNNNNNNGG 2 cut(s) 172, 325
AjiI CACGTC 1 cut(s) 406
AjnI CCWGG 2 cut(s) 213, 417
AluBI AGCT 2 cut(s) 76, 517
AluI AGCT 2 cut(s) 76, 517
Alw21I GWGCWC 3 cut(s) 78, 121, 485
AlwI GGATC 4 cut(s) 171, 184, 190, 361
Ama87I CYCGRG 2 cut(s) 200, 341
AoxI GGCC 9 cut(s) 46, 54, 58, 145, 307, 337, 415, 430, 511
ApaI GGGCCC 1 cut(s) 341
ApeKI GCWGC 1 cut(s) 5
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
AspLEI GCGC 1 cut(s) 269
AspS9I GGNCC 6 cut(s) 308, 337, 338, 345, 430, 465
AsuC2I CCSGG 5 cut(s) 201, 202, 312, 342, 343
AsuHPI GGTGA 2 cut(s) 220, 233
AvaI CYCGRG 2 cut(s) 200, 341
AvaII GGWCC 2 cut(s) 345, 465
AxyI CCTNAGG 1 cut(s) 18
BaeGI GKGCMC 1 cut(s) 341
BalI TGGCCA 1 cut(s) 513
BamHI GGATCC 1 cut(s) 176
BanI GGYRCC 2 cut(s) 242, 266
BanII GRGCYC 2 cut(s) 78, 341
Bbv12I GWGCWC 3 cut(s) 78, 121, 485
BccI CCATC 2 cut(s) 64, 389
BceAI ACGGC 2 cut(s) 256, 280
BcgI CGANNNNNNTGC 2 cut(s) 388, 422
BciT130I CCWGG 2 cut(s) 215, 419
BcnI CCSGG 5 cut(s) 201, 202, 312, 342, 343
BfoI RGCGCY 1 cut(s) 270
BglI GCCNNNNNGGC 1 cut(s) 153
BisI GCNGC 3 cut(s) 6, 61, 148
BlsI GCNGC 3 cut(s) 7, 62, 149
Bme1390I CCNGG 7 cut(s) 201, 202, 215, 312, 342, 343, 419
Bme18I GGWCC 2 cut(s) 345, 465
BmeT110I CYCGRG 2 cut(s) 200, 341
BmgBI CACGTC 1 cut(s) 406
BmgT120I GGNCC 6 cut(s) 308, 337, 338, 345, 430, 465
BmiI GGNNCC 9 cut(s) 142, 178, 244, 268, 310, 339, 340, 346, 466
BmrFI CCNGG 7 cut(s) 201, 202, 215, 312, 342, 343, 419
BmsI GCATC 1 cut(s) 72
BpuMI CCSGG 5 cut(s) 201, 202, 312, 342, 343
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 7 cut(s) 199, 200, 214, 310, 324, 340, 341
BsaWI WCCGGW 1 cut(s) 245
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 325
Bse118I RCCGGY 5 cut(s) 52, 56, 128, 143, 305
Bse21I CCTNAGG 1 cut(s) 18
BseBI CCWGG 2 cut(s) 215, 419
BseDI CCNNGG 7 cut(s) 199, 200, 214, 310, 324, 340, 341
BseLI CCNNNNNNNGG 2 cut(s) 172, 325
BseMII CTCAG 2 cut(s) 371, 375
BseSI GKGCMC 1 cut(s) 341
BseX3I CGGCCG 3 cut(s) 54, 58, 145
BsgI GTGCAG 2 cut(s) 109, 355
Bsh1285I CGRYCG 4 cut(s) 42, 57, 61, 148
BshFI GGCC 9 cut(s) 48, 56, 60, 147, 309, 339, 417, 432, 513
BshNI GGYRCC 2 cut(s) 242, 266
BsiEI CGRYCG 4 cut(s) 42, 57, 61, 148
BsiHKAI GWGCWC 3 cut(s) 78, 121, 485
BsiHKCI CYCGRG 2 cut(s) 200, 341
BslFI GGGAC 1 cut(s) 358
BslI CCNNNNNNNGG 2 cut(s) 172, 325
BsmFI GGGAC 1 cut(s) 358
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 9 cut(s) 48, 56, 60, 147, 309, 339, 417, 432, 513
BsoBI CYCGRG 2 cut(s) 200, 341
Bsp120I GGGCCC 1 cut(s) 337
Bsp1286I GDGCHC 4 cut(s) 78, 121, 341, 485
Bsp143I GATC 5 cut(s) 39, 176, 195, 258, 353
Bsp19I CCATGG 1 cut(s) 324
BspACI CCGC 8 cut(s) 61, 97, 102, 148, 180, 231, 335, 375
BspANI GGCC 9 cut(s) 48, 56, 60, 147, 309, 339, 417, 432, 513
BspCNI CTCAG 2 cut(s) 370, 376
BspLI GGNNCC 9 cut(s) 142, 178, 244, 268, 310, 339, 340, 346, 466
BspPI GGATC 4 cut(s) 171, 184, 190, 361
BspT107I GGYRCC 2 cut(s) 242, 266
BsrBI CCGCTC 1 cut(s) 150
BsrFI RCCGGY 5 cut(s) 52, 56, 128, 143, 305
BssAI RCCGGY 5 cut(s) 52, 56, 128, 143, 305
BssECI CCNNGG 7 cut(s) 199, 200, 214, 310, 324, 340, 341
BssMI GATC 5 cut(s) 39, 176, 195, 258, 353
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 2 cut(s) 215, 419
Bst4CI ACNGT 2 cut(s) 191, 509
BstACI GRCGYC 1 cut(s) 267
BstC8I GCNNGC 7 cut(s) 50, 54, 58, 158, 337, 401, 515
BstDEI CTNAG 3 cut(s) 18, 357, 384
BstDSI CCRYGG 1 cut(s) 324
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 5 cut(s) 42, 179, 198, 261, 356
BstMBI GATC 5 cut(s) 39, 176, 195, 258, 353
BstMCI CGRYCG 4 cut(s) 42, 57, 61, 148
BstMWI GCNNNNNNNGC 3 cut(s) 153, 249, 275
BstNI CCWGG 2 cut(s) 215, 419
BstSCI CCNGG 7 cut(s) 199, 200, 213, 310, 340, 341, 417
BstSLI GKGCMC 1 cut(s) 341
BstX2I RGATCY 2 cut(s) 176, 353
BstYI RGATCY 2 cut(s) 176, 353
BstZI CGGCCG 3 cut(s) 54, 58, 145
Bsu36I CCTNAGG 1 cut(s) 18
BsuRI GGCC 9 cut(s) 48, 56, 60, 147, 309, 339, 417, 432, 513
BtgI CCRYGG 1 cut(s) 324
BtrI CACGTC 1 cut(s) 406
Cac8I GCNNGC 7 cut(s) 50, 54, 58, 158, 337, 401, 515
CfoI GCGC 1 cut(s) 269
Cfr10I RCCGGY 5 cut(s) 52, 56, 128, 143, 305
Cfr13I GGNCC 6 cut(s) 308, 337, 338, 345, 430, 465
Cfr9I CCCGGG 2 cut(s) 200, 341
CviAII CATG 3 cut(s) 34, 208, 325
DdeI CTNAG 3 cut(s) 18, 357, 384
DinI GGCGCC 1 cut(s) 268
DpnI GATC 5 cut(s) 41, 178, 197, 260, 355
DpnII GATC 5 cut(s) 39, 176, 195, 258, 353
DraIII CACNNNGTG 2 cut(s) 193, 409
EaeI YGGCCR 5 cut(s) 54, 58, 145, 415, 511
EagI CGGCCG 3 cut(s) 54, 58, 145
EciI GGCGGA 1 cut(s) 169
Ecl136II GAGCTC 1 cut(s) 76
EclXI CGGCCG 3 cut(s) 54, 58, 145
Eco130I CCWWGG 1 cut(s) 324
Eco24I GRGCYC 2 cut(s) 78, 341
Eco47I GGWCC 2 cut(s) 345, 465
Eco52I CGGCCG 3 cut(s) 54, 58, 145
Eco53kI GAGCTC 1 cut(s) 76
Eco81I CCTNAGG 1 cut(s) 18
Eco88I CYCGRG 2 cut(s) 200, 341
EcoICRI GAGCTC 1 cut(s) 76
EcoO109I RGGNCCY 2 cut(s) 338, 430
EcoRII CCWGG 2 cut(s) 213, 417
EcoT14I CCWWGG 1 cut(s) 324
EcoT38I GRGCYC 2 cut(s) 78, 341
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 3 cut(s) 37, 211, 328
FaiI YATR 3 cut(s) 35, 209, 326
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FaqI GGGAC 1 cut(s) 358
FatI CATG 3 cut(s) 33, 207, 324
FauI CCCGC 2 cut(s) 104, 328
Fnu4HI GCNGC 3 cut(s) 6, 61, 148
FriOI GRGCYC 2 cut(s) 78, 341
FseI GGCCGGCC 1 cut(s) 60
Fsp4HI GCNGC 3 cut(s) 6, 61, 148
GlaI GCGC 1 cut(s) 268
GluI GCNGC 3 cut(s) 6, 61, 148
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 9 cut(s) 48, 56, 60, 147, 309, 339, 417, 432, 513
HhaI GCGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 3 cut(s) 37, 211, 328
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HinfI GANTC 2 cut(s) 254, 315
HphI GGTGA 2 cut(s) 220, 233
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 5 cut(s) 67, 295, 445, 454, 474
Hpy99I CGWCG 2 cut(s) 284, 410
HpyAV CCTTC 4 cut(s) 130, 193, 451, 471
HpyCH4III ACNGT 2 cut(s) 191, 509
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 2 cut(s) 126, 372
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 249, 275
HpyF3I CTNAG 3 cut(s) 18, 357, 384
HpySE526I ACGT 1 cut(s) 405
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 3 cut(s) 37, 211, 328
HspAI GCGC 1 cut(s) 267
KasI GGCGCC 1 cut(s) 266
KroI GCCGGC 2 cut(s) 52, 56
KroNI GCCGGC 2 cut(s) 54, 58
Kzo9I GATC 5 cut(s) 39, 176, 195, 258, 353
LmnI GCTCC 3 cut(s) 73, 155, 488
LweI GCATC 1 cut(s) 72
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 1 cut(s) 221
MalI GATC 5 cut(s) 41, 178, 197, 260, 355
MbiI CCGCTC 1 cut(s) 150
MboI GATC 5 cut(s) 39, 176, 195, 258, 353
MboII GAAGA 2 cut(s) 19, 355
MflI RGATCY 2 cut(s) 176, 353
MhlI GDGCHC 4 cut(s) 78, 121, 341, 485
MlsI TGGCCA 1 cut(s) 513
MluNI TGGCCA 1 cut(s) 513
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 1 cut(s) 263
MnlI CCTC 7 cut(s) 38, 171, 212, 242, 329, 421, 443
Mox20I TGGCCA 1 cut(s) 513
MroNI GCCGGC 2 cut(s) 52, 56
MscI TGGCCA 1 cut(s) 513
MslI CAYNNNNRTG 1 cut(s) 68
Msp20I TGGCCA 1 cut(s) 513
MspR9I CCNGG 7 cut(s) 201, 202, 215, 312, 342, 343, 419
Mva1269I GAATGC 1 cut(s) 337
MvaI CCWGG 2 cut(s) 215, 419
MwoI GCNNNNNNNGC 3 cut(s) 153, 249, 275
NaeI GCCGGC 2 cut(s) 54, 58
NarI GGCGCC 1 cut(s) 267
NciI CCSGG 5 cut(s) 201, 202, 312, 342, 343
NcoI CCATGG 1 cut(s) 324
NdeII GATC 5 cut(s) 39, 176, 195, 258, 353
NgoMIV GCCGGC 2 cut(s) 52, 56
NlaIII CATG 3 cut(s) 37, 211, 328
NlaIV GGNNCC 9 cut(s) 142, 178, 244, 268, 310, 339, 340, 346, 466
NmeAIII GCCGAG 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 221
PcsI WCGNNNNNNNCGW 2 cut(s) 288, 420
PctI GAATGC 1 cut(s) 337
PdiI GCCGGC 2 cut(s) 54, 58
PfeI GAWTC 1 cut(s) 315
PkrI GCNGC 3 cut(s) 7, 62, 149
Ple19I CGATCG 1 cut(s) 42
PleI GAGTC 1 cut(s) 262
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 262
Psp124BI GAGCTC 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 213, 417
PspGI CCWGG 2 cut(s) 213, 417
PspN4I GGNNCC 9 cut(s) 142, 178, 244, 268, 310, 339, 340, 346, 466
PspOMI GGGCCC 1 cut(s) 337
PspPI GGNCC 6 cut(s) 308, 337, 338, 345, 430, 465
PsuI RGATCY 2 cut(s) 176, 353
PvuI CGATCG 1 cut(s) 42
RigI GGCCGGCC 1 cut(s) 60
RseI CAYNNNNRTG 1 cut(s) 68
SacI GAGCTC 1 cut(s) 78
SatI GCNGC 3 cut(s) 6, 61, 148
Sau3AI GATC 5 cut(s) 39, 176, 195, 258, 353
Sau96I GGNCC 6 cut(s) 308, 337, 338, 345, 430, 465
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 7 cut(s) 201, 202, 215, 312, 342, 343, 419
SduI GDGCHC 4 cut(s) 78, 121, 341, 485
SetI ASST 8 cut(s) 24, 78, 223, 408, 423, 462, 482, 519
SfaNI GCATC 1 cut(s) 72
SfoI GGCGCC 1 cut(s) 268
SgrAI CRCCGGYG 1 cut(s) 128
SinI GGWCC 2 cut(s) 345, 465
SmaI CCCGGG 2 cut(s) 202, 343
SmiMI CAYNNNNRTG 1 cut(s) 68
SsiI CCGC 8 cut(s) 61, 97, 102, 148, 180, 231, 335, 375
SspDI GGCGCC 1 cut(s) 266
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 7 cut(s) 199, 200, 213, 310, 340, 341, 417
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 2 cut(s) 191, 509
TaiI ACGT 1 cut(s) 408
TaqI TCGA 5 cut(s) 30, 257, 393, 435, 453
TauI GCSGC 2 cut(s) 63, 150
TfiI GAWTC 1 cut(s) 315
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 2 cut(s) 196, 355
TspGWI ACGGA 2 cut(s) 104, 366
TspMI CCCGGG 2 cut(s) 200, 341
VpaK11BI GGWCC 2 cut(s) 345, 465
XmaI CCCGGG 2 cut(s) 200, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.