Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011671

Physical Location & Seq

Genomic Coordinates Forward (+)

14565526 .. 14566044

Gene Structure 519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g11090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCAAATCCTAAGGTTTTCTTTGACATGACGATCGGAGGCCAGCCGGCCGGCCGCATCGTGATGGAGCTCTACGCCGACACCACCCCCCGCACCGCTGAGAACTTCAGGGCTCTCTGCACCGGCGAGAAGGGCGTCGGCCGGTCCGGCAAGCCCCTCCACTACAAGGGATCGACCTTCCACCGCGTGATCCCGGGTTTCATGTGCCAGGGAGGTGATTTCACCGCCGGAAACGGCACCGGAGGCGAGTCGATCTACGGCGCGAAGTTCGCGGACGAGAACTTCAACAAGAAGCACACCGGACCCGGAATCTTGTCCATGGCCAACGCCGGTCCCGGAACTAATGGATCTCAGTTCTTCATCTGCACCGCCAAGACCGAGTGGCTCGACGGCAAGCACGTGGTGTTCGGGCAGGTGGTCGAGGGGCTCGATGTGGTGAAGAACATCGAGAAGGTGGGGTCTGGACAGGGAAGGACCTCGAAGCCGGTGGTGGTAGCCGACTGTGGCCAGCTCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

173

Amino Acids

18.14

Weight (kDa)

8.69

Isoelectric Point (pI)

18.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	7 - 169	6.5e-51	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16600 AT2G16600 AT2G21130 AT4G38740
fragaria_vesca	FvH4_2g01940 FvH4_2g01940
malus_domestica	MD10G1119700.v1.1
prunus_persica	Prupe.8G161100_v2.0.a1
pyrus_communis	pycom05g11090 pycom10g10310
rosa_chinensis	RchiOBHm_Chr6g0245141
rosa_laevigata	RLG00000015322
rosa_roxburghii	Rroxscaffold_7G00215430
rosa_rugosa	Rorug05G0512300
rosa_samantha	Rh6AG027100 Rh6BG023000 Rh6CG021700 Rh6DG021800
rosa_wichuraiana	Rw6G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	403
Acc36I	ACCTGC	1 cut(s)	403
AccB1I	GGYRCC	1 cut(s)	236
AccII	CGCG	3 cut(s)	186, 263, 272
AciI	CCGC	7 cut(s)	55, 91, 96, 184, 225, 272, 369
AclWI	GGATC	3 cut(s)	178, 184, 355
AcoI	YGGCCR	5 cut(s)	48, 52, 139, 321, 505
AcuI	CTGAAG	1 cut(s)	91
AcvI	CACGTG	1 cut(s)	400
AcyI	GRCGYC	1 cut(s)	135
AdeI	CACNNNGTG	2 cut(s)	187, 403
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	2 cut(s)	70, 511
AluI	AGCT	2 cut(s)	70, 511
Alw21I	GWGCWC	1 cut(s)	72
AlwI	GGATC	3 cut(s)	178, 184, 355
Ama87I	CYCGRG	1 cut(s)	193
AoxI	GGCC	6 cut(s)	40, 48, 52, 139, 321, 505
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	4 cut(s)	144, 302, 332, 474
AsuC2I	CCSGG	4 cut(s)	194, 195, 306, 336
AsuHPI	GGTGA	3 cut(s)	214, 227, 448
AvaI	CYCGRG	1 cut(s)	193
AvaII	GGWCC	4 cut(s)	144, 302, 332, 474
AxyI	CCTNAGG	1 cut(s)	12
BalI	TGGCCA	2 cut(s)	323, 507
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	3 cut(s)	72, 115, 429
BbrPI	CACGTG	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	72
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	3 cut(s)	250, 274, 406
BciT130I	CCWGG	1 cut(s)	209
BcnI	CCSGG	4 cut(s)	194, 195, 306, 336
BfaI	CTAG	1 cut(s)	517
BfuAI	ACCTGC	1 cut(s)	403
BglI	GCCNNNNNGGC	1 cut(s)	147
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
Bme1390I	CCNGG	5 cut(s)	194, 195, 209, 306, 336
Bme18I	GGWCC	4 cut(s)	144, 302, 332, 474
BmeT110I	CYCGRG	1 cut(s)	193
BmgT120I	GGNCC	4 cut(s)	144, 302, 332, 474
BmiI	GGNNCC	3 cut(s)	238, 304, 334
BmrFI	CCNGG	5 cut(s)	194, 195, 209, 306, 336
BmsI	GCATC	1 cut(s)	66
BpuMI	CCSGG	4 cut(s)	194, 195, 306, 336
BsaAI	YACGTR	1 cut(s)	400
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	3 cut(s)	193, 208, 318
BsaWI	WCCGGW	2 cut(s)	239, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse118I	RCCGGY	6 cut(s)	46, 50, 122, 141, 329, 484
Bse21I	CCTNAGG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	3 cut(s)	193, 208, 318
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	2 cut(s)	90, 365
BseX3I	CGGCCG	3 cut(s)	48, 52, 139
BsgI	GTGCAG	2 cut(s)	103, 349
Bsh1236I	CGCG	3 cut(s)	186, 263, 272
Bsh1285I	CGRYCG	4 cut(s)	36, 51, 55, 142
BshFI	GGCC	6 cut(s)	42, 50, 54, 141, 323, 507
BshNI	GGYRCC	1 cut(s)	236
BsiEI	CGRYCG	4 cut(s)	36, 51, 55, 142
BsiHKAI	GWGCWC	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	6 cut(s)	42, 50, 54, 141, 323, 507
BsoBI	CYCGRG	1 cut(s)	193
Bsp1286I	GDGCHC	3 cut(s)	72, 115, 429
Bsp143I	GATC	5 cut(s)	33, 170, 189, 252, 347
Bsp19I	CCATGG	1 cut(s)	318
BspACI	CCGC	7 cut(s)	55, 91, 96, 184, 225, 272, 369
BspANI	GGCC	6 cut(s)	42, 50, 54, 141, 323, 507
BspCNI	CTCAG	2 cut(s)	91, 364
BspFNI	CGCG	3 cut(s)	186, 263, 272
BspLI	GGNNCC	3 cut(s)	238, 304, 334
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	3 cut(s)	178, 184, 355
BspT107I	GGYRCC	1 cut(s)	236
BsrFI	RCCGGY	6 cut(s)	46, 50, 122, 141, 329, 484
BssAI	RCCGGY	6 cut(s)	46, 50, 122, 141, 329, 484
BssECI	CCNNGG	3 cut(s)	193, 208, 318
BssMI	GATC	5 cut(s)	33, 170, 189, 252, 347
BssNI	GRCGYC	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	503
BstACI	GRCGYC	1 cut(s)	135
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	6 cut(s)	44, 48, 52, 152, 395, 509
BstDEI	CTNAG	3 cut(s)	12, 99, 351
BstDSI	CCRYGG	1 cut(s)	318
BstFNI	CGCG	3 cut(s)	186, 263, 272
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	5 cut(s)	36, 173, 192, 255, 350
BstMBI	GATC	5 cut(s)	33, 170, 189, 252, 347
BstMCI	CGRYCG	4 cut(s)	36, 51, 55, 142
BstMWI	GCNNNNNNNGC	4 cut(s)	132, 147, 243, 269
BstNI	CCWGG	1 cut(s)	209
BstSCI	CCNGG	5 cut(s)	192, 193, 207, 304, 334
BstUI	CGCG	3 cut(s)	186, 263, 272
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BstZI	CGGCCG	3 cut(s)	48, 52, 139
Bsu36I	CCTNAGG	1 cut(s)	12
BsuRI	GGCC	6 cut(s)	42, 50, 54, 141, 323, 507
BtgI	CCRYGG	1 cut(s)	318
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	6 cut(s)	44, 48, 52, 152, 395, 509
CfoI	GCGC	1 cut(s)	263
Cfr10I	RCCGGY	6 cut(s)	46, 50, 122, 141, 329, 484
Cfr13I	GGNCC	4 cut(s)	144, 302, 332, 474
Cfr9I	CCCGGG	1 cut(s)	193
CpoI	CGGWCCG	1 cut(s)	144
CseI	GACGC	1 cut(s)	124
CspI	CGGWCCG	1 cut(s)	144
CviAII	CATG	3 cut(s)	28, 202, 319
DdeI	CTNAG	3 cut(s)	12, 99, 351
DpnI	GATC	5 cut(s)	35, 172, 191, 254, 349
DpnII	GATC	5 cut(s)	33, 170, 189, 252, 347
DraIII	CACNNNGTG	2 cut(s)	187, 403
EaeI	YGGCCR	5 cut(s)	48, 52, 139, 321, 505
EagI	CGGCCG	3 cut(s)	48, 52, 139
Ecl136II	GAGCTC	1 cut(s)	70
EclXI	CGGCCG	3 cut(s)	48, 52, 139
Eco130I	CCWWGG	1 cut(s)	318
Eco24I	GRGCYC	3 cut(s)	72, 115, 429
Eco47I	GGWCC	4 cut(s)	144, 302, 332, 474
Eco52I	CGGCCG	3 cut(s)	48, 52, 139
Eco53kI	GAGCTC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	91
Eco72I	CACGTG	1 cut(s)	400
Eco81I	CCTNAGG	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	3 cut(s)	72, 115, 429
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	3 cut(s)	31, 205, 322
FaiI	YATR	3 cut(s)	29, 203, 320
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	3 cut(s)	27, 201, 318
FauI	CCCGC	1 cut(s)	98
Fnu4HI	GCNGC	1 cut(s)	55
FriOI	GRGCYC	3 cut(s)	72, 115, 429
FseI	GGCCGGCC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	1 cut(s)	517
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	1 cut(s)	55
HaeIII	GGCC	6 cut(s)	42, 50, 54, 141, 323, 507
HgaI	GACGC	1 cut(s)	124
HhaI	GCGC	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	3 cut(s)	31, 205, 322
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HinfI	GANTC	2 cut(s)	248, 309
HphI	GGTGA	3 cut(s)	214, 227, 448
Hpy188I	TCNGA	1 cut(s)	38
Hpy188III	TCNNGA	3 cut(s)	61, 448, 462
Hpy99I	CGWCG	2 cut(s)	140, 392
HpyAV	CCTTC	4 cut(s)	124, 187, 445, 465
HpyCH4III	ACNGT	1 cut(s)	503
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	2 cut(s)	120, 366
HpyF10VI	GCNNNNNNNGC	4 cut(s)	132, 147, 243, 269
HpyF3I	CTNAG	3 cut(s)	12, 99, 351
HpySE526I	ACGT	1 cut(s)	399
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	3 cut(s)	31, 205, 322
HspAI	GCGC	1 cut(s)	261
KroI	GCCGGC	2 cut(s)	46, 50
KroNI	GCCGGC	2 cut(s)	48, 52
Kzo9I	GATC	5 cut(s)	33, 170, 189, 252, 347
LmnI	GCTCC	1 cut(s)	67
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	517
MaeII	ACGT	1 cut(s)	399
MalI	GATC	5 cut(s)	35, 172, 191, 254, 349
MboI	GATC	5 cut(s)	33, 170, 189, 252, 347
MboII	GAAGA	2 cut(s)	349, 451
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	3 cut(s)	72, 115, 429
MlsI	TGGCCA	2 cut(s)	323, 507
MluNI	TGGCCA	2 cut(s)	323, 507
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	6 cut(s)	32, 167, 206, 236, 415, 487
Mox20I	TGGCCA	2 cut(s)	323, 507
MroNI	GCCGGC	2 cut(s)	46, 50
MscI	TGGCCA	2 cut(s)	323, 507
MslI	CAYNNNNRTG	1 cut(s)	62
Msp20I	TGGCCA	2 cut(s)	323, 507
MspA1I	CMGCKG	1 cut(s)	98
MspR9I	CCNGG	5 cut(s)	194, 195, 209, 306, 336
MvaI	CCWGG	1 cut(s)	209
MvnI	CGCG	3 cut(s)	186, 263, 272
MwoI	GCNNNNNNNGC	4 cut(s)	132, 147, 243, 269
NaeI	GCCGGC	2 cut(s)	48, 52
NciI	CCSGG	4 cut(s)	194, 195, 306, 336
NcoI	CCATGG	1 cut(s)	318
NdeII	GATC	5 cut(s)	33, 170, 189, 252, 347
NgoMIV	GCCGGC	2 cut(s)	46, 50
NlaIII	CATG	3 cut(s)	31, 205, 322
NlaIV	GGNNCC	3 cut(s)	238, 304, 334
PaqCI	CACCTGC	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	2 cut(s)	396, 426
PdiI	GCCGGC	2 cut(s)	48, 52
PfeI	GAWTC	1 cut(s)	309
PfoI	TCCNGGA	1 cut(s)	334
PkrI	GCNGC	1 cut(s)	56
Ple19I	CGATCG	1 cut(s)	36
PleI	GAGTC	1 cut(s)	256
PmaCI	CACGTG	1 cut(s)	400
PmlI	CACGTG	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	256
Ppu21I	YACGTR	1 cut(s)	400
PpuMI	RGGWCCY	1 cut(s)	474
Psp124BI	GAGCTC	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	207
PspCI	CACGTG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	3 cut(s)	238, 304, 334
PspPI	GGNCC	4 cut(s)	144, 302, 332, 474
PspPPI	RGGWCCY	1 cut(s)	474
PsuI	RGATCY	1 cut(s)	347
PvuI	CGATCG	1 cut(s)	36
RigI	GGCCGGCC	1 cut(s)	54
RseI	CAYNNNNRTG	1 cut(s)	62
Rsr2I	CGGWCCG	1 cut(s)	144
RsrII	CGGWCCG	1 cut(s)	144
SacI	GAGCTC	1 cut(s)	72
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	5 cut(s)	33, 170, 189, 252, 347
Sau96I	GGNCC	4 cut(s)	144, 302, 332, 474
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	5 cut(s)	194, 195, 209, 306, 336
SduI	GDGCHC	3 cut(s)	72, 115, 429
SetI	ASST	9 cut(s)	18, 72, 179, 217, 402, 417, 456, 479, 513
SfaNI	GCATC	1 cut(s)	66
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	4 cut(s)	144, 302, 332, 474
SmaI	CCCGGG	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	62
SsiI	CCGC	7 cut(s)	55, 91, 96, 184, 225, 272, 369
SspMI	CTAG	1 cut(s)	517
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	5 cut(s)	192, 193, 207, 304, 334
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	503
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	7 cut(s)	173, 251, 387, 420, 429, 447, 479
TaqII	GACCGA	1 cut(s)	392
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	309
TspDTI	ATGAA	2 cut(s)	190, 349
TspMI	CCCGGG	1 cut(s)	193
VpaK11BI	GGWCC	4 cut(s)	144, 302, 332, 474
XmaI	CCCGGG	1 cut(s)	193
XspI	CTAG	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.