Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011671

Physical Location & Seq

Genomic Coordinates Forward (+)

19673179 .. 19674248

Gene Structure 1070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1119700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTGCCAGGGAGGTGACTTCACCGCCGGAAACGGCACCGGAGGAGAGTCGATCTACGGCGCCAAGTTCGCCGACGAGAACTTCAAGAAGAAGCACACCGGACCTGGAATATTATCCATGGCCAACGCGGGTCCCGGAACCAACGGATCTCAGTTCTTCATCTGCACAGCCAAGACCGAGTGGCTCGACGGCAAGCACGTGGTGTTCGGGCAGGTGATCGAGGGTCTGGATGTGGTGAAGAACATCGAGAAGGTCGGATCTGGACAGGGAAGGACCTCGAAGCCGGTGGTTATCGCCGACTGCGGCCAGCTATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

106

Amino Acids

10.87

Weight (kDa)

6.7

Isoelectric Point (pI)

15.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	1 - 102	7.2e-31	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16600 AT2G16600 AT2G21130 AT4G38740
fragaria_vesca	FvH4_2g01940 FvH4_2g01940
malus_domestica	MD10G1119700.v1.1
prunus_persica	Prupe.8G161100_v2.0.a1
pyrus_communis	pycom05g11090 pycom10g10310
rosa_chinensis	RchiOBHm_Chr6g0245141
rosa_laevigata	RLG00000015322
rosa_roxburghii	Rroxscaffold_7G00215430
rosa_rugosa	Rorug05G0512300
rosa_samantha	Rh6AG027100 Rh6BG023000 Rh6CG021700 Rh6DG021800
rosa_wichuraiana	Rw6G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	202
Acc36I	ACCTGC	1 cut(s)	202
AccB1I	GGYRCC	2 cut(s)	35, 59
AccII	CGCG	1 cut(s)	128
AciI	CCGC	3 cut(s)	24, 128, 303
AclWI	GGATC	2 cut(s)	154, 265
AcoI	YGGCCR	2 cut(s)	120, 304
AcvI	CACGTG	1 cut(s)	199
AcyI	GRCGYC	1 cut(s)	60
AdeI	CACNNNGTG	1 cut(s)	202
AgsI	TTSAA	1 cut(s)	85
AjnI	CCWGG	2 cut(s)	6, 103
AluBI	AGCT	1 cut(s)	310
AluI	AGCT	1 cut(s)	310
AlwI	GGATC	2 cut(s)	154, 265
AoxI	GGCC	2 cut(s)	120, 304
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	3 cut(s)	101, 131, 273
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	4 cut(s)	13, 26, 226, 247
AvaII	GGWCC	3 cut(s)	101, 131, 273
BalI	TGGCCA	1 cut(s)	122
BanI	GGYRCC	2 cut(s)	35, 59
BbrPI	CACGTG	1 cut(s)	199
BceAI	ACGGC	3 cut(s)	49, 73, 205
BciT130I	CCWGG	2 cut(s)	8, 105
BcnI	CCSGG	1 cut(s)	135
BfaI	CTAG	1 cut(s)	316
BfoI	RGCGCY	1 cut(s)	63
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	1 cut(s)	304
BlsI	GCNGC	1 cut(s)	305
Bme1390I	CCNGG	3 cut(s)	8, 105, 135
Bme18I	GGWCC	3 cut(s)	101, 131, 273
BmgT120I	GGNCC	3 cut(s)	101, 131, 273
BmiI	GGNNCC	5 cut(s)	37, 61, 132, 133, 139
BmrFI	CCNGG	3 cut(s)	8, 105, 135
BpuMI	CCSGG	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	199
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	7, 117
BsaWI	WCCGGW	2 cut(s)	38, 98
Bse118I	RCCGGY	1 cut(s)	283
BseBI	CCWGG	2 cut(s)	8, 105
BseDI	CCNNGG	2 cut(s)	7, 117
BseGI	GGATG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	57
BsgI	GTGCAG	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	122, 306
BshNI	GGYRCC	2 cut(s)	35, 59
BsiSI	CCGG	5 cut(s)	27, 39, 99, 135, 284
BslFI	GGGAC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	117
BsnI	GGCC	2 cut(s)	122, 306
Bsp143I	GATC	4 cut(s)	51, 146, 216, 257
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	3 cut(s)	24, 128, 303
BspANI	GGCC	2 cut(s)	122, 306
BspCNI	CTCAG	1 cut(s)	163
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	5 cut(s)	37, 61, 132, 133, 139
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	2 cut(s)	154, 265
BspT107I	GGYRCC	2 cut(s)	35, 59
BsrFI	RCCGGY	1 cut(s)	283
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	7, 117
BssMI	GATC	4 cut(s)	51, 146, 216, 257
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	2 cut(s)	8, 105
BstACI	GRCGYC	1 cut(s)	60
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	2 cut(s)	194, 308
BstDEI	CTNAG	1 cut(s)	150
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	235
BstFNI	CGCG	1 cut(s)	128
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	4 cut(s)	54, 149, 219, 260
BstMBI	GATC	4 cut(s)	51, 146, 216, 257
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	2 cut(s)	8, 105
BstSCI	CCNGG	3 cut(s)	6, 103, 133
BstUI	CGCG	1 cut(s)	128
BstX2I	RGATCY	2 cut(s)	146, 257
BstYI	RGATCY	2 cut(s)	146, 257
BsuRI	GGCC	2 cut(s)	122, 306
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	235
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	2 cut(s)	194, 308
CfoI	GCGC	1 cut(s)	62
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	3 cut(s)	101, 131, 273
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	6 cut(s)	122, 170, 184, 283, 306, 310
CviKI_1	RGCY	6 cut(s)	122, 170, 184, 283, 306, 310
DdeI	CTNAG	1 cut(s)	150
DinI	GGCGCC	1 cut(s)	61
DpnI	GATC	4 cut(s)	53, 148, 218, 259
DpnII	GATC	4 cut(s)	51, 146, 216, 257
DraIII	CACNNNGTG	1 cut(s)	202
EaeI	YGGCCR	2 cut(s)	120, 304
Eco130I	CCWWGG	1 cut(s)	117
Eco47I	GGWCC	3 cut(s)	101, 131, 273
Eco72I	CACGTG	1 cut(s)	199
EcoO109I	RGGNCCY	2 cut(s)	131, 273
EcoRII	CCWGG	2 cut(s)	6, 103
EcoT14I	CCWWGG	1 cut(s)	117
EgeI	GGCGCC	1 cut(s)	61
EheI	GGCGCC	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	1 cut(s)	121
FaiI	YATR	1 cut(s)	119
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	1 cut(s)	117
FauI	CCCGC	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	304
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	304
FspBI	CTAG	1 cut(s)	316
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	304
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	122, 306
HapII	CCGG	5 cut(s)	27, 39, 99, 135, 284
HhaI	GCGC	1 cut(s)	62
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	121
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HinfI	GANTC	1 cut(s)	47
HpaII	CCGG	5 cut(s)	27, 39, 99, 135, 284
HphI	GGTGA	4 cut(s)	13, 26, 226, 247
Hpy188I	TCNGA	1 cut(s)	257
Hpy188III	TCNNGA	4 cut(s)	85, 227, 247, 261
Hpy99I	CGWCG	2 cut(s)	77, 191
HpyAV	CCTTC	2 cut(s)	244, 264
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	1 cut(s)	165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	1 cut(s)	121
HspAI	GCGC	1 cut(s)	60
KasI	GGCGCC	1 cut(s)	59
KflI	GGGWCCC	1 cut(s)	131
Kzo9I	GATC	4 cut(s)	51, 146, 216, 257
MaeI	CTAG	1 cut(s)	316
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	4 cut(s)	53, 148, 218, 259
MboI	GATC	4 cut(s)	51, 146, 216, 257
MboII	GAAGA	3 cut(s)	100, 148, 250
MflI	RGATCY	2 cut(s)	146, 257
MlsI	TGGCCA	1 cut(s)	122
MluNI	TGGCCA	1 cut(s)	122
Mly113I	GGCGCC	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	4 cut(s)	5, 35, 214, 286
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	122
MspI	CCGG	5 cut(s)	27, 39, 99, 135, 284
MspR9I	CCNGG	3 cut(s)	8, 105, 135
MvaI	CCWGG	2 cut(s)	8, 105
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	68
NarI	GGCGCC	1 cut(s)	60
NciI	CCSGG	1 cut(s)	135
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	4 cut(s)	51, 146, 216, 257
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	5 cut(s)	37, 61, 132, 133, 139
NmuCI	GTSAC	1 cut(s)	14
PaqCI	CACCTGC	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	305
PleI	GAGTC	1 cut(s)	55
PluTI	GGCGCC	1 cut(s)	63
PmaCI	CACGTG	1 cut(s)	199
PmlI	CACGTG	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	55
Ppu21I	YACGTR	1 cut(s)	199
PpuMI	RGGWCCY	2 cut(s)	131, 273
Psp5II	RGGWCCY	2 cut(s)	131, 273
Psp6I	CCWGG	2 cut(s)	6, 103
PspCI	CACGTG	1 cut(s)	199
PspGI	CCWGG	2 cut(s)	6, 103
PspN4I	GGNNCC	5 cut(s)	37, 61, 132, 133, 139
PspPI	GGNCC	3 cut(s)	101, 131, 273
PspPPI	RGGWCCY	2 cut(s)	131, 273
PsuI	RGATCY	2 cut(s)	146, 257
SatI	GCNGC	1 cut(s)	304
Sau3AI	GATC	4 cut(s)	51, 146, 216, 257
Sau96I	GGNCC	3 cut(s)	101, 131, 273
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	3 cut(s)	8, 105, 135
SetI	ASST	7 cut(s)	16, 106, 201, 216, 255, 278, 312
SfoI	GGCGCC	1 cut(s)	61
SinI	GGWCC	3 cut(s)	101, 131, 273
SsiI	CCGC	3 cut(s)	24, 128, 303
SspDI	GGCGCC	1 cut(s)	59
SspI	AATATT	1 cut(s)	111
SspMI	CTAG	1 cut(s)	316
StyD4I	CCNGG	3 cut(s)	6, 103, 133
StyI	CCWWGG	1 cut(s)	117
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	5 cut(s)	50, 186, 219, 246, 278
TaqII	GACCGA	1 cut(s)	191
TauI	GCSGC	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	148
TspGWI	ACGGA	1 cut(s)	159
VpaK11BI	GGWCC	3 cut(s)	101, 131, 273
XspI	CTAG	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.