Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011671

Physical Location & Seq

Genomic Coordinates Forward (+)

65987769 .. 65989856

Gene Structure 2088 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00215430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTGTTTTGTAGCTACGGAGACGCATGCTTTCCTGAAACCGTCTCTGAAGTCCTTGAAGCAGATAATGTCGGTTGTCTATCCCGGATTGGTACAGGCAGACGAATTTTTGCCAGCCGGCCGGCCGTGTCGTCATGGAGCTCTACGCCGACACCACCCCCGCACCGCCGAGAACTTCCGTGCTCTCTGCACCGGCGAGAAGGGCGTCGGCCGCTCCGGCAAGCCCCTCCACTACAAGGGATCGTCCTTCCACCGTGTGATCCCCGGCTTCATGTGCCAGGGAGGTGACTTCACCGCCGGAAACGGCACCGGAGGCGAGTCGATCTACGGCGCCAAGTTCGCCGACGAGAACTTCGTCAAGAAGCACACCGGCCCCGGCATCCTCTCCATGGCGAATGCCGGCCCCGGCACCAACGGATCTCAGTTCTTCGTCTGTACTGCTAAGACCGAGTGGCTCGACGGCAAGCACGTCGTGTTCGGCCAGGTCGTCGAGGGTCTCGACGTCGTCAAGAACATCGAGAAGGTTGGGTCTAGCTCTGGAAGGACCTCCAAGCCTGTTGTGGTTGCCGACTGTGGCCAGCTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

195

Amino Acids

20.75

Weight (kDa)

9.32

Isoelectric Point (pI)

26.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	51 - 192	4.7e-43	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16600 AT2G16600 AT2G21130 AT4G38740
fragaria_vesca	FvH4_2g01940 FvH4_2g01940
malus_domestica	MD10G1119700.v1.1
prunus_persica	Prupe.8G161100_v2.0.a1
pyrus_communis	pycom05g11090 pycom10g10310
rosa_chinensis	RchiOBHm_Chr6g0245141
rosa_laevigata	RLG00000015322
rosa_roxburghii	Rroxscaffold_7G00215430
rosa_rugosa	Rorug05G0512300
rosa_samantha	Rh6AG027100 Rh6BG023000 Rh6CG021700 Rh6DG021800
rosa_wichuraiana	Rw6G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	504
AccB1I	GGYRCC	3 cut(s)	305, 329, 407
AccBSI	CCGCTC	1 cut(s)	213
AciI	CCGC	4 cut(s)	160, 165, 211, 294
AclWI	GGATC	3 cut(s)	247, 253, 424
AcoI	YGGCCR	5 cut(s)	118, 122, 208, 478, 574
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	68
AcyI	GRCGYC	3 cut(s)	204, 330, 501
AdeI	CACNNNGTG	2 cut(s)	256, 472
AfaI	GTAC	2 cut(s)	93, 436
AfiI	CCNNNNNNNGG	2 cut(s)	235, 388
AgsI	TTSAA	1 cut(s)	58
AjiI	CACGTC	1 cut(s)	469
AjnI	CCWGG	2 cut(s)	276, 480
AluBI	AGCT	4 cut(s)	14, 140, 534, 580
AluI	AGCT	4 cut(s)	14, 140, 534, 580
Alw21I	GWGCWC	2 cut(s)	142, 184
Alw26I	GTCTC	3 cut(s)	14, 48, 500
AlwI	GGATC	3 cut(s)	247, 253, 424
AoxI	GGCC	7 cut(s)	118, 122, 208, 370, 400, 478, 574
ApoI	RAATTY	1 cut(s)	104
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	3 cut(s)	371, 401, 543
AsuC2I	CCSGG	4 cut(s)	84, 264, 375, 405
AsuHPI	GGTGA	2 cut(s)	283, 296
AvaII	GGWCC	1 cut(s)	543
BalI	TGGCCA	1 cut(s)	576
BanI	GGYRCC	3 cut(s)	305, 329, 407
BanII	GRGCYC	1 cut(s)	142
Bbv12I	GWGCWC	2 cut(s)	142, 184
BceAI	ACGGC	4 cut(s)	109, 319, 343, 475
BcgI	CGANNNNNNTGC	2 cut(s)	451, 485
BciT130I	CCWGG	2 cut(s)	278, 482
BcnI	CCSGG	4 cut(s)	84, 264, 375, 405
BcoDI	GTCTC	3 cut(s)	14, 48, 500
BfaI	CTAG	1 cut(s)	531
BfoI	RGCGCY	1 cut(s)	333
BglI	GCCNNNNNGGC	1 cut(s)	216
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
Bme1390I	CCNGG	6 cut(s)	84, 264, 278, 375, 405, 482
Bme18I	GGWCC	1 cut(s)	543
BmgBI	CACGTC	1 cut(s)	469
BmgT120I	GGNCC	3 cut(s)	371, 401, 543
BmiI	GGNNCC	5 cut(s)	307, 331, 373, 403, 409
BmrFI	CCNGG	6 cut(s)	84, 264, 278, 375, 405, 482
BmsI	GCATC	1 cut(s)	387
BpuMI	CCSGG	4 cut(s)	84, 264, 375, 405
BsaHI	GRCGYC	3 cut(s)	204, 330, 501
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	5 cut(s)	262, 277, 373, 387, 403
BsaWI	WCCGGW	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 388
Bse118I	RCCGGY	5 cut(s)	116, 120, 191, 368, 398
BseBI	CCWGG	2 cut(s)	278, 482
BseDI	CCNNGG	5 cut(s)	262, 277, 373, 387, 403
BseGI	GGATG	1 cut(s)	378
BseLI	CCNNNNNNNGG	2 cut(s)	235, 388
BseMII	CTCAG	1 cut(s)	434
BseX3I	CGGCCG	3 cut(s)	118, 122, 208
BsgI	GTGCAG	1 cut(s)	172
Bsh1285I	CGRYCG	3 cut(s)	121, 125, 211
BshFI	GGCC	7 cut(s)	120, 124, 210, 372, 402, 480, 576
BshNI	GGYRCC	3 cut(s)	305, 329, 407
BsiEI	CGRYCG	3 cut(s)	121, 125, 211
BsiHKAI	GWGCWC	2 cut(s)	142, 184
BslI	CCNNNNNNNGG	2 cut(s)	235, 388
BsmAI	GTCTC	3 cut(s)	14, 48, 500
BsmBI	CGTCTC	2 cut(s)	14, 48
BsmI	GAATGC	1 cut(s)	400
BsnI	GGCC	7 cut(s)	120, 124, 210, 372, 402, 480, 576
Bso31I	GGTCTC	1 cut(s)	500
Bsp1286I	GDGCHC	2 cut(s)	142, 184
Bsp143I	GATC	4 cut(s)	239, 258, 321, 416
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	4 cut(s)	160, 165, 211, 294
BspANI	GGCC	7 cut(s)	120, 124, 210, 372, 402, 480, 576
BspCNI	CTCAG	1 cut(s)	433
BspLI	GGNNCC	5 cut(s)	307, 331, 373, 403, 409
BspPI	GGATC	3 cut(s)	247, 253, 424
BspT107I	GGYRCC	3 cut(s)	305, 329, 407
BspTNI	GGTCTC	1 cut(s)	500
BsrBI	CCGCTC	1 cut(s)	213
BsrFI	RCCGGY	5 cut(s)	116, 120, 191, 368, 398
BssAI	RCCGGY	5 cut(s)	116, 120, 191, 368, 398
BssECI	CCNNGG	5 cut(s)	262, 277, 373, 387, 403
BssMI	GATC	4 cut(s)	239, 258, 321, 416
BssNI	GRCGYC	3 cut(s)	204, 330, 501
BssT1I	CCWWGG	1 cut(s)	387
Bst2UI	CCWGG	2 cut(s)	278, 482
Bst4CI	ACNGT	3 cut(s)	42, 254, 572
BstACI	GRCGYC	3 cut(s)	204, 330, 501
BstC8I	GCNNGC	8 cut(s)	27, 114, 118, 122, 221, 400, 464, 578
BstDEI	CTNAG	3 cut(s)	420, 441, 585
BstDSI	CCRYGG	1 cut(s)	387
BstF5I	GGATG	1 cut(s)	378
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	4 cut(s)	242, 261, 324, 419
BstMAI	GTCTC	3 cut(s)	14, 48, 500
BstMBI	GATC	4 cut(s)	239, 258, 321, 416
BstMCI	CGRYCG	3 cut(s)	121, 125, 211
BstMWI	GCNNNNNNNGC	6 cut(s)	201, 210, 216, 273, 312, 338
BstNI	CCWGG	2 cut(s)	278, 482
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	6 cut(s)	82, 262, 276, 373, 403, 480
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BstZI	CGGCCG	3 cut(s)	118, 122, 208
BsuRI	GGCC	7 cut(s)	120, 124, 210, 372, 402, 480, 576
BtgI	CCRYGG	1 cut(s)	387
BtrI	CACGTC	1 cut(s)	469
BtsCI	GGATG	1 cut(s)	378
Cac8I	GCNNGC	8 cut(s)	27, 114, 118, 122, 221, 400, 464, 578
CfoI	GCGC	1 cut(s)	332
Cfr10I	RCCGGY	5 cut(s)	116, 120, 191, 368, 398
Cfr13I	GGNCC	3 cut(s)	371, 401, 543
CseI	GACGC	2 cut(s)	31, 193
Csp6I	GTAC	2 cut(s)	92, 435
CviAII	CATG	4 cut(s)	26, 134, 271, 388
CviQI	GTAC	2 cut(s)	92, 435
DdeI	CTNAG	3 cut(s)	420, 441, 585
DinI	GGCGCC	1 cut(s)	331
DpnI	GATC	4 cut(s)	241, 260, 323, 418
DpnII	GATC	4 cut(s)	239, 258, 321, 416
DraIII	CACNNNGTG	2 cut(s)	256, 472
EaeI	YGGCCR	5 cut(s)	118, 122, 208, 478, 574
EagI	CGGCCG	3 cut(s)	118, 122, 208
Ecl136II	GAGCTC	1 cut(s)	140
EclXI	CGGCCG	3 cut(s)	118, 122, 208
Eco130I	CCWWGG	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	142
Eco31I	GGTCTC	1 cut(s)	500
Eco47I	GGWCC	1 cut(s)	543
Eco52I	CGGCCG	3 cut(s)	118, 122, 208
Eco53kI	GAGCTC	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	68
EcoICRI	GAGCTC	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	543
EcoRII	CCWGG	2 cut(s)	276, 480
EcoT14I	CCWWGG	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	142
EgeI	GGCGCC	1 cut(s)	331
EheI	GGCGCC	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	387
Esp3I	CGTCTC	2 cut(s)	14, 48
FaeI	CATG	4 cut(s)	29, 137, 274, 391
FaiI	YATR	4 cut(s)	27, 135, 272, 389
FatI	CATG	4 cut(s)	25, 133, 270, 387
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	1 cut(s)	211
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	1 cut(s)	142
FseI	GGCCGGCC	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	211
FspBI	CTAG	1 cut(s)	531
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	1 cut(s)	211
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	7 cut(s)	120, 124, 210, 372, 402, 480, 576
HgaI	GACGC	2 cut(s)	31, 193
HhaI	GCGC	1 cut(s)	332
Hin1I	GRCGYC	3 cut(s)	204, 330, 501
Hin1II	CATG	4 cut(s)	29, 137, 274, 391
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HinfI	GANTC	1 cut(s)	317
HphI	GGTGA	2 cut(s)	283, 296
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	6 cut(s)	34, 358, 497, 508, 517, 537
Hpy99I	CGWCG	7 cut(s)	209, 347, 461, 473, 491, 503, 506
HpyAV	CCTTC	4 cut(s)	193, 256, 514, 534
HpyCH4III	ACNGT	3 cut(s)	42, 254, 572
HpyCH4IV	ACGT	2 cut(s)	468, 501
HpyCH4V	TGCA	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	6 cut(s)	201, 210, 216, 273, 312, 338
HpyF3I	CTNAG	3 cut(s)	420, 441, 585
HpySE526I	ACGT	2 cut(s)	468, 501
Hsp92I	GRCGYC	3 cut(s)	204, 330, 501
Hsp92II	CATG	4 cut(s)	29, 137, 274, 391
HspAI	GCGC	1 cut(s)	330
KasI	GGCGCC	1 cut(s)	329
KroI	GCCGGC	3 cut(s)	116, 120, 398
KroNI	GCCGGC	3 cut(s)	118, 122, 400
Kzo9I	GATC	4 cut(s)	239, 258, 321, 416
LmnI	GCTCC	2 cut(s)	137, 218
LweI	GCATC	1 cut(s)	387
MaeI	CTAG	1 cut(s)	531
MaeII	ACGT	2 cut(s)	468, 501
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	4 cut(s)	241, 260, 323, 418
MbiI	CCGCTC	1 cut(s)	213
MboI	GATC	4 cut(s)	239, 258, 321, 416
MboII	GAAGA	1 cut(s)	418
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	2 cut(s)	142, 184
MlsI	TGGCCA	1 cut(s)	576
MluCI	AATT	1 cut(s)	104
MluNI	TGGCCA	1 cut(s)	576
Mly113I	GGCGCC	1 cut(s)	330
MlyI	GAGTC	1 cut(s)	326
MnlI	CCTC	6 cut(s)	236, 275, 305, 392, 484, 556
Mox20I	TGGCCA	1 cut(s)	576
MroNI	GCCGGC	3 cut(s)	116, 120, 398
MscI	TGGCCA	1 cut(s)	576
Msp20I	TGGCCA	1 cut(s)	576
MspR9I	CCNGG	6 cut(s)	84, 264, 278, 375, 405, 482
Mva1269I	GAATGC	1 cut(s)	400
MvaI	CCWGG	2 cut(s)	278, 482
MwoI	GCNNNNNNNGC	6 cut(s)	201, 210, 216, 273, 312, 338
NaeI	GCCGGC	3 cut(s)	118, 122, 400
NarI	GGCGCC	1 cut(s)	330
NciI	CCSGG	4 cut(s)	84, 264, 375, 405
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	4 cut(s)	239, 258, 321, 416
NgoMIV	GCCGGC	3 cut(s)	116, 120, 398
NlaIII	CATG	4 cut(s)	29, 137, 274, 391
NlaIV	GGNNCC	5 cut(s)	307, 331, 373, 403, 409
NmeAIII	GCCGAG	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	284
NspI	RCATGY	1 cut(s)	29
PaeI	GCATGC	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	4 cut(s)	351, 465, 483, 495
PctI	GAATGC	1 cut(s)	400
PdiI	GCCGGC	3 cut(s)	118, 122, 400
PflFI	GACNNNGTC	1 cut(s)	503
PfoI	TCCNGGA	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	212
PleI	GAGTC	1 cut(s)	325
PluTI	GGCGCC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	325
PpuMI	RGGWCCY	1 cut(s)	543
Psp124BI	GAGCTC	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	543
Psp6I	CCWGG	2 cut(s)	276, 480
PspGI	CCWGG	2 cut(s)	276, 480
PspN4I	GGNNCC	5 cut(s)	307, 331, 373, 403, 409
PspPI	GGNCC	3 cut(s)	371, 401, 543
PspPPI	RGGWCCY	1 cut(s)	543
PsuI	RGATCY	1 cut(s)	416
PsyI	GACNNNGTC	1 cut(s)	503
RigI	GGCCGGCC	1 cut(s)	124
RsaI	GTAC	2 cut(s)	93, 436
RsaNI	GTAC	2 cut(s)	92, 435
SacI	GAGCTC	1 cut(s)	142
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	4 cut(s)	239, 258, 321, 416
Sau96I	GGNCC	3 cut(s)	371, 401, 543
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	6 cut(s)	84, 264, 278, 375, 405, 482
SduI	GDGCHC	2 cut(s)	142, 184
SfaNI	GCATC	1 cut(s)	387
SfoI	GGCGCC	1 cut(s)	331
SgrAI	CRCCGGYG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	543
SphI	GCATGC	1 cut(s)	29
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	4 cut(s)	160, 165, 211, 294
SspDI	GGCGCC	1 cut(s)	329
SspMI	CTAG	1 cut(s)	531
SstI	GAGCTC	1 cut(s)	142
StyD4I	CCNGG	6 cut(s)	82, 262, 276, 373, 403, 480
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	3 cut(s)	42, 254, 572
TaiI	ACGT	2 cut(s)	471, 504
TaqI	TCGA	5 cut(s)	320, 456, 489, 498, 516
TaqII	GACCGA	1 cut(s)	461
TasI	AATT	1 cut(s)	104
TatI	WGTACW	1 cut(s)	434
TauI	GCSGC	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	1 cut(s)	259
TspGWI	ACGGA	3 cut(s)	32, 167, 429
Tth111I	GACNNNGTC	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	543
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	1 cut(s)	29
XcmI	CCANNNNNNNNNTGG	1 cut(s)	556
XspI	CTAG	1 cut(s)	531
ZraI	GACGTC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.