Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011671

Physical Location & Seq

Genomic Coordinates Reverse (-)

18083395 .. 18084630

Gene Structure 1236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G38740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCGTTCCCTAAGGTATACTTCGACATGACCATCGACGGCCAGCCCGCGGGAAGGATCGTGATGGAGCTGTACACCGATAAGACTCCCAGGACTGCCGAGAATTTCAGAGCTCTCTGCACCGGAGAGAAAGGTGTTGGCGGTACCGGAAAACCCCTTCACTTCAAGGGATCTAAGTTTCACCGTGTGATCCCTAACTTCATGTGCCAGGGAGGAGATTTCACCGCCGGGAACGGAACAGGCGGTGAGTCGATCTACGGGAGCAAGTTCGAGGACGAGAATTTCGAGAGGAAGCACACCGGACCGGGGATCCTGTCGATGGCGAACGCCGGTGCAAACACGAACGGATCTCAGTTCTTCATCTGCACCGTGAAGACCGATTGGCTTGATGGGAAGCACGTGGTGTTTGGGCAGGTCGTGGAAGGCTTAGACGTGGTAAAGGCCATCGAGAAGGTTGGATCATCATCTGGAAAGCCGACGAAGCCTGTGGTTGTTGCCGATTGTGGTCAGCTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0001932 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009735 GO:0009741 GO:0009742 GO:0009755 GO:0009785 GO:0009791 GO:0009987 GO:0010017 GO:0010033 GO:0010035 GO:0010038 GO:0014070 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019220 GO:0019222 GO:0019538 GO:0023052 GO:0030522 GO:0031323 GO:0031399 GO:0032268 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042325 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048046 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071478 GO:0071482 GO:0071483 GO:0071489 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:0104004 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

172

Amino Acids

18.37

Weight (kDa)

7.68

Isoelectric Point (pI)

8.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	7 - 169	1.1e-51	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16600 AT2G16600 AT2G21130 AT4G38740
fragaria_vesca	FvH4_2g01940 FvH4_2g01940
malus_domestica	MD10G1119700.v1.1
prunus_persica	Prupe.8G161100_v2.0.a1
pyrus_communis	pycom05g11090 pycom10g10310
rosa_chinensis	RchiOBHm_Chr6g0245141
rosa_laevigata	RLG00000015322
rosa_roxburghii	Rroxscaffold_7G00215430
rosa_rugosa	Rorug05G0512300
rosa_samantha	Rh6AG027100 Rh6BG023000 Rh6CG021700 Rh6DG021800
rosa_wichuraiana	Rw6G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	403
Acc65I	GGTACC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	18
AccII	CGCG	1 cut(s)	50
AciI	CCGC	5 cut(s)	48, 50, 141, 225, 243
AclWI	GGATC	7 cut(s)	65, 178, 184, 304, 317, 355, 466
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	2 cut(s)	103, 280
AcvI	CACGTG	1 cut(s)	400
AdeI	CACNNNGTG	2 cut(s)	187, 403
AfaI	GTAC	2 cut(s)	74, 145
AfiI	CCNNNNNNNGG	4 cut(s)	49, 54, 306, 319
AgsI	TTSAA	1 cut(s)	166
AjiI	CACGTC	1 cut(s)	433
AjnI	CCWGG	2 cut(s)	89, 207
AluBI	AGCT	3 cut(s)	70, 113, 511
AluI	AGCT	3 cut(s)	70, 113, 511
Alw21I	GWGCWC	1 cut(s)	115
AlwI	GGATC	7 cut(s)	65, 178, 184, 304, 317, 355, 466
AoxI	GGCC	2 cut(s)	40, 441
ApoI	RAATTY	2 cut(s)	103, 280
ArsI	GACNNNNNNTTYG	2 cut(s)	266, 298
Asp718I	GGTACC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	2 cut(s)	229, 306
AsuHPI	GGTGA	3 cut(s)	173, 214, 257
AvaII	GGWCC	1 cut(s)	302
AxyI	CCTNAGG	1 cut(s)	12
BamHI	GGATCC	1 cut(s)	309
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	115
BbrPI	CACGTG	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	115
BccI	CCATC	5 cut(s)	41, 58, 313, 383, 452
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	2 cut(s)	91, 209
BcnI	CCSGG	2 cut(s)	229, 306
BfuAI	ACCTGC	1 cut(s)	403
Bme1390I	CCNGG	4 cut(s)	91, 209, 229, 306
Bme18I	GGWCC	1 cut(s)	302
BmgBI	CACGTC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	145, 311
BmrFI	CCNGG	4 cut(s)	91, 209, 229, 306
BpiI	GAAGAC	1 cut(s)	380
BpuMI	CCSGG	2 cut(s)	229, 306
BsaAI	YACGTR	1 cut(s)	400
BsaBI	GATNNNNATC	1 cut(s)	463
BsaJI	CCNNGG	4 cut(s)	48, 89, 208, 305
BsaWI	WCCGGW	3 cut(s)	122, 146, 299
Bsc4I	CCNNNNNNNGG	4 cut(s)	49, 54, 306, 319
Bse118I	RCCGGY	1 cut(s)	329
Bse21I	CCTNAGG	1 cut(s)	12
Bse8I	GATNNNNATC	1 cut(s)	463
BseBI	CCWGG	2 cut(s)	91, 209
BseDI	CCNNGG	4 cut(s)	48, 89, 208, 305
BseJI	GATNNNNATC	1 cut(s)	463
BseLI	CCNNNNNNNGG	4 cut(s)	49, 54, 306, 319
BseMII	CTCAG	1 cut(s)	365
BseRI	GAGGAG	1 cut(s)	228
BsgI	GTGCAG	2 cut(s)	103, 349
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	2 cut(s)	42, 443
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	115
BsiSI	CCGG	6 cut(s)	123, 147, 228, 300, 305, 330
BslI	CCNNNNNNNGG	4 cut(s)	49, 54, 306, 319
BsnI	GGCC	2 cut(s)	42, 443
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp1407I	TGTACA	1 cut(s)	72
Bsp143I	GATC	7 cut(s)	57, 170, 189, 252, 309, 347, 458
BspACI	CCGC	5 cut(s)	48, 50, 141, 225, 243
BspANI	GGCC	2 cut(s)	42, 443
BspCNI	CTCAG	1 cut(s)	364
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	2 cut(s)	145, 311
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	7 cut(s)	65, 178, 184, 304, 317, 355, 466
BspT107I	GGYRCC	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	329
BsrGI	TGTACA	1 cut(s)	72
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	4 cut(s)	48, 89, 208, 305
BssMI	GATC	7 cut(s)	57, 170, 189, 252, 309, 347, 458
BssNAI	GTATAC	1 cut(s)	19
Bst1107I	GTATAC	1 cut(s)	19
Bst2UI	CCWGG	2 cut(s)	91, 209
Bst4CI	ACNGT	2 cut(s)	185, 370
BstAUI	TGTACA	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	2 cut(s)	44, 48
BstDEI	CTNAG	5 cut(s)	12, 174, 351, 427, 516
BstDSI	CCRYGG	1 cut(s)	48
BstFNI	CGCG	1 cut(s)	50
BstKTI	GATC	7 cut(s)	60, 173, 192, 255, 312, 350, 461
BstMBI	GATC	7 cut(s)	57, 170, 189, 252, 309, 347, 458
BstMWI	GCNNNNNNNGC	1 cut(s)	481
BstNI	CCWGG	2 cut(s)	91, 209
BstSCI	CCNGG	4 cut(s)	89, 207, 227, 304
BstUI	CGCG	1 cut(s)	50
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	3 cut(s)	170, 309, 347
BstYI	RGATCY	3 cut(s)	170, 309, 347
BstZ17I	GTATAC	1 cut(s)	19
Bsu36I	CCTNAGG	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	42, 443
BtgI	CCRYGG	1 cut(s)	48
BtrI	CACGTC	1 cut(s)	433
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	2 cut(s)	44, 48
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	302
Cfr42I	CCGCGG	1 cut(s)	51
CpoI	CGGWCCG	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	73, 144
CspI	CGGWCCG	1 cut(s)	302
CviAII	CATG	2 cut(s)	28, 202
CviQI	GTAC	2 cut(s)	73, 144
DdeI	CTNAG	5 cut(s)	12, 174, 351, 427, 516
DpnI	GATC	7 cut(s)	59, 172, 191, 254, 311, 349, 460
DpnII	GATC	7 cut(s)	57, 170, 189, 252, 309, 347, 458
DraIII	CACNNNGTG	2 cut(s)	187, 403
EaeI	YGGCCR	1 cut(s)	40
Ecl136II	GAGCTC	1 cut(s)	113
Eco24I	GRGCYC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	302
Eco53kI	GAGCTC	1 cut(s)	113
Eco72I	CACGTG	1 cut(s)	400
Eco81I	CCTNAGG	1 cut(s)	12
EcoICRI	GAGCTC	1 cut(s)	113
EcoRII	CCWGG	2 cut(s)	89, 207
EcoT38I	GRGCYC	1 cut(s)	115
FaeI	CATG	2 cut(s)	31, 205
FaiI	YATR	3 cut(s)	19, 29, 203
FalI	AAGNNNNNCTT	1 cut(s)	37
FatI	CATG	2 cut(s)	27, 201
FauI	CCCGC	2 cut(s)	43, 55
FblI	GTMKAC	1 cut(s)	18
FriOI	GRGCYC	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	42, 443
HapII	CCGG	6 cut(s)	123, 147, 228, 300, 305, 330
Hin1II	CATG	2 cut(s)	31, 205
HinfI	GANTC	2 cut(s)	85, 248
HpaII	CCGG	6 cut(s)	123, 147, 228, 300, 305, 330
HphI	GGTGA	3 cut(s)	173, 214, 257
Hpy166II	GTNNAC	2 cut(s)	19, 75
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	4 cut(s)	61, 286, 448, 468
Hpy8I	GTNNAC	2 cut(s)	19, 75
Hpy99I	CGWCG	2 cut(s)	41, 481
HpyAV	CCTTC	4 cut(s)	48, 167, 416, 445
HpyCH4III	ACNGT	2 cut(s)	185, 370
HpyCH4IV	ACGT	2 cut(s)	399, 432
HpyCH4V	TGCA	3 cut(s)	120, 335, 366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	481
HpyF3I	CTNAG	5 cut(s)	12, 174, 351, 427, 516
HpySE526I	ACGT	2 cut(s)	399, 432
Hsp92II	CATG	2 cut(s)	31, 205
KpnI	GGTACC	1 cut(s)	147
KspI	CCGCGG	1 cut(s)	51
Kzo9I	GATC	7 cut(s)	57, 170, 189, 252, 309, 347, 458
LmnI	GCTCC	2 cut(s)	67, 261
MaeII	ACGT	2 cut(s)	399, 432
MalI	GATC	7 cut(s)	59, 172, 191, 254, 311, 349, 460
MboI	GATC	7 cut(s)	57, 170, 189, 252, 309, 347, 458
MboII	GAAGA	2 cut(s)	349, 385
MflI	RGATCY	3 cut(s)	170, 309, 347
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	2 cut(s)	103, 280
MlyI	GAGTC	2 cut(s)	79, 257
MmeI	TCCRAC	1 cut(s)	436
MnlI	CCTC	3 cut(s)	206, 265, 282
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	6 cut(s)	123, 147, 228, 300, 305, 330
MspR9I	CCNGG	4 cut(s)	91, 209, 229, 306
MvaI	CCWGG	2 cut(s)	91, 209
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	481
NciI	CCSGG	2 cut(s)	229, 306
NdeII	GATC	7 cut(s)	57, 170, 189, 252, 309, 347, 458
NlaIII	CATG	2 cut(s)	31, 205
NlaIV	GGNNCC	2 cut(s)	145, 311
NmeAIII	GCCGAG	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PleI	GAGTC	2 cut(s)	79, 256
PmaCI	CACGTG	1 cut(s)	400
PmlI	CACGTG	1 cut(s)	400
PpsI	GAGTC	2 cut(s)	79, 256
Ppu21I	YACGTR	1 cut(s)	400
Psp124BI	GAGCTC	1 cut(s)	115
Psp6I	CCWGG	2 cut(s)	89, 207
PspCI	CACGTG	1 cut(s)	400
PspGI	CCWGG	2 cut(s)	89, 207
PspN4I	GGNNCC	2 cut(s)	145, 311
PspPI	GGNCC	1 cut(s)	302
PsuI	RGATCY	3 cut(s)	170, 309, 347
RsaI	GTAC	2 cut(s)	74, 145
RsaNI	GTAC	2 cut(s)	73, 144
Rsr2I	CGGWCCG	1 cut(s)	302
RsrII	CGGWCCG	1 cut(s)	302
SacI	GAGCTC	1 cut(s)	115
SacII	CCGCGG	1 cut(s)	51
Sau3AI	GATC	7 cut(s)	57, 170, 189, 252, 309, 347, 458
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	2 cut(s)	79, 257
ScrFI	CCNGG	4 cut(s)	91, 209, 229, 306
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	9 cut(s)	18, 72, 115, 136, 402, 417, 435, 456, 513
Sfr303I	CCGCGG	1 cut(s)	51
SgrAI	CRCCGGYG	1 cut(s)	329
SgrBI	CCGCGG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	302
Sse9I	AATT	2 cut(s)	103, 280
SsiI	CCGC	5 cut(s)	48, 50, 141, 225, 243
SstI	GAGCTC	1 cut(s)	115
StyD4I	CCNGG	4 cut(s)	89, 207, 227, 304
TaaI	ACNGT	2 cut(s)	185, 370
TaiI	ACGT	2 cut(s)	402, 435
TaqI	TCGA	7 cut(s)	24, 36, 251, 270, 285, 317, 447
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	2 cut(s)	103, 280
TatI	WGTACW	1 cut(s)	72
TspDTI	ATGAA	2 cut(s)	190, 349
TspGWI	ACGGA	2 cut(s)	249, 360
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	2 cut(s)	103, 280
XmiI	GTMKAC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.