Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009182

Physical Location & Seq

Genomic Coordinates Forward (+)

7399056 .. 7400970

Gene Structure 1915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGTGGATTGGTCTACACTACCGAAGGATCTTTTAGACCTAATTTCAAAATCTCTAGAATCTTCCTTCGATCTCATCCAATTCCGTTCCGTTTGTTCTTCATGGCGATCCGCCGCCGAGCCGAAAAGTCCTCTTCCAACACATCATCTCCCGATCCTCCCCGATAACGGGGGGAGTCTCTTCCCTGATTCCGCCGTTGGTTTCCGTCTCTCGCAGCGGAGTATCTTACTTATCAAGCCTCATGAACCGTGTATCGAATCGGATTCGTTTGGATGGTTGATCAAAGTCGAGGAAGATCTTAATGTTCCTCGTAAGGTGACTCTTTTAGATCCGTTATGTGATACAAGAAACTCAATTCCTGAGAATTTCCCTCGTGTTCTCGATATGTCCAAGTTTAAGGTTCGAGAATTGGGTCGTGAATTCAAGCTTCATTATTTCAATACTGTTGGTGATATTGTAGAGAGTTTGTATTTGGAGAAAGCTGTTGTTAAGTATCTAGATTGTGATGGAGATTATAAATTTGTGTTGCTTACGATTCATGTTTCGGGGAAGTTAGCTGTGTTTAGGTCTTGGGATCGAGCATGGACTGTGATTAATGACATGCCTTCTCCTTATGATGATGTGATGTTGTTCGATGGACGTTTCTTTGCGGTTGATAACAACGGGAGGACTGTGGTTGTGGATTACAGTTCCTTGAAGTTGACGTTGGTTGCGAGTCCTGTGTTTGGTGGTGATAAGAAGTTTTTGATTGAATCTTGTGGTGAAATGTTGCTTGTTGATATGTACTTGAGCTTAGAGGCAGTGGAAGGGGATCCTGGATTTGTTGAGGAGATTTTCGAGCATCCTGCGTTTTATATGAATGAGAGAACAGTCAAATTTAAAGTGTATAGATTTGTGGAAAGAGAGGAGAGTTGGGTTGATGTTTACGATCTTGAGGATAAGATGTTGTTCCTTGGTGATGATTCCACCTTTTCTGCTTCAGCTTCCGATATATTACCTCTATGTGATGGAAGCTCTGTGTTCTTCAACGGTAATGTCTTCAATGGGGAAGACTTGGGTGCGATGCAAGATCGAGATTTGGGAGTGTTTGACTTCAGGAGTGGGAAAATAGAGCTAGTGCAAAAACTCCCTGAATATGCTAAGCTGTTTTGGCCTCCACCTCCTTGGATAACTTCTCATGCGCGTGCTGAAGATCATATTGGAGAAACATCATCCCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

407

Amino Acids

46.23

Weight (kDa)

4.72

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	69 - 364	2.4e-44	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17030 AT2G17036 AT2G17036
fragaria_vesca	FvH4_2g15930 FvH4_2g15930 FvH4_2g15930
malus_domestica	MD05G1128300.v1.1
prunus_persica	Prupe.8G172400_v2.0.a1 Prupe.8G172400_v2.0.a1
pyrus_communis	pycom05g12420
rosa_chinensis	RchiOBHm_Chr6g0279451
rosa_laevigata	RLG00000013146
rosa_multiflora	Rmu_co8218300.1_g000001 Rmu_sc0000274.1_g000005 Rmu_sc0034735.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188900
rosa_rugosa	Rorug06G0124300
rosa_samantha	Rh6AG233600 Rh6BG237900 Rh6CG239900 Rh6DG231600
rosa_wichuraiana	Rw6G020380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	516
AccI	GTMKAC	1 cut(s)	14
AccII	CGCG	1 cut(s)	1183
AciI	CCGC	5 cut(s)	111, 114, 192, 217, 650
AclWI	GGATC	7 cut(s)	36, 102, 148, 323, 582, 806, 819
AcsI	RAATTY	4 cut(s)	364, 419, 518, 875
AcuI	CTGAAG	3 cut(s)	963, 1078, 1209
AfaI	GTAC	1 cut(s)	785
AfiI	CCNNNNNNNGG	3 cut(s)	167, 168, 725
AgsI	TTSAA	7 cut(s)	48, 424, 439, 697, 752, 1027, 1042
AjnI	CCWGG	1 cut(s)	814
AjuI	GAANNNNNNNTTGG	4 cut(s)	689, 721, 1182, 1214
AluBI	AGCT	8 cut(s)	427, 482, 557, 792, 983, 1014, 1114, 1144
AluI	AGCT	8 cut(s)	427, 482, 557, 792, 983, 1014, 1114, 1144
Alw26I	GTCTC	2 cut(s)	182, 212
AlwI	GGATC	7 cut(s)	36, 102, 148, 323, 582, 806, 819
AoxI	GGCC	1 cut(s)	1151
ApeKI	GCWGC	1 cut(s)	214
ApoI	RAATTY	4 cut(s)	364, 419, 518, 875
AseI	ATTAAT	1 cut(s)	594
AspLEI	GCGC	1 cut(s)	1183
AsuHPI	GGTGA	5 cut(s)	328, 461, 743, 773, 968
BamHI	GGATCC	1 cut(s)	811
BauI	CACGAG	1 cut(s)	372
BbsI	GAAGAC	2 cut(s)	1030, 1056
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	4 cut(s)	267, 500, 629, 1001
BceAI	ACGGC	1 cut(s)	179
BcgI	CGANNNNNNTGC	2 cut(s)	827, 861
BciT130I	CCWGG	1 cut(s)	816
BclI	TGATCA	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	182, 212
BfaI	CTAG	3 cut(s)	56, 497, 1115
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	2 cut(s)	114, 215
BlpI	GCTNAGC	1 cut(s)	1140
BlsI	GCNGC	2 cut(s)	115, 216
Bme1390I	CCNGG	1 cut(s)	816
BmiI	GGNNCC	1 cut(s)	813
BmrFI	CCNGG	1 cut(s)	816
BmsI	GCATC	2 cut(s)	850, 1053
BpiI	GAAGAC	2 cut(s)	1030, 1056
Bpu1102I	GCTNAGC	1 cut(s)	1140
BpuEI	CTTGAG	2 cut(s)	808, 953
BsaJI	CCNNGG	2 cut(s)	952, 1163
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 168, 725
BseBI	CCWGG	1 cut(s)	816
BseDI	CCNNGG	2 cut(s)	952, 1163
BseGI	GGATG	4 cut(s)	75, 278, 841, 1211
BseLI	CCNNNNNNNGG	3 cut(s)	167, 168, 725
BseMII	CTCAG	1 cut(s)	351
BseRI	GAGGAG	2 cut(s)	842, 920
BseXI	GCAGC	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	1183
BshFI	GGCC	1 cut(s)	1153
BslI	CCNNNNNNNGG	3 cut(s)	167, 168, 725
BsmAI	GTCTC	2 cut(s)	182, 212
BsmBI	CGTCTC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	1153
Bsp1720I	GCTNAGC	1 cut(s)	1140
BspACI	CCGC	5 cut(s)	111, 114, 192, 217, 650
BspANI	GGCC	1 cut(s)	1153
BspCNI	CTCAG	1 cut(s)	352
BspFNI	CGCG	1 cut(s)	1183
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	813
BspPI	GGATC	7 cut(s)	36, 102, 148, 323, 582, 806, 819
BssECI	CCNNGG	2 cut(s)	952, 1163
BssSI	CACGAG	1 cut(s)	372
BssT1I	CCWWGG	2 cut(s)	952, 1163
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	816
Bst4CI	ACNGT	7 cut(s)	249, 445, 589, 673, 689, 871, 1031
Bst6I	CTCTTC	2 cut(s)	138, 185
BstC8I	GCNNGC	1 cut(s)	1185
BstDEI	CTNAG	3 cut(s)	360, 793, 1140
BstF5I	GGATG	4 cut(s)	75, 278, 841, 1211
BstFNI	CGCG	1 cut(s)	1183
BstHHI	GCGC	1 cut(s)	1183
BstMAI	GTCTC	2 cut(s)	182, 212
BstMWI	GCNNNNNNNGC	1 cut(s)	1150
BstNI	CCWGG	1 cut(s)	816
BstNSI	RCATGY	1 cut(s)	604
BstSCI	CCNGG	1 cut(s)	814
BstUI	CGCG	1 cut(s)	1183
BstV1I	GCAGC	1 cut(s)	226
BstV2I	GAAGAC	2 cut(s)	1030, 1056
BstX2I	RGATCY	4 cut(s)	28, 295, 328, 811
BstXI	CCANNNNNNTGG	1 cut(s)	1164
BstYI	RGATCY	4 cut(s)	28, 295, 328, 811
BsuRI	GGCC	1 cut(s)	1153
BtgZI	GCGATG	1 cut(s)	1076
BtsCI	GGATG	4 cut(s)	75, 278, 841, 1211
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	1 cut(s)	807
Cac8I	GCNNGC	1 cut(s)	1185
CciI	TCATGA	1 cut(s)	241
CfoI	GCGC	1 cut(s)	1183
Csp6I	GTAC	1 cut(s)	784
CviAII	CATG	6 cut(s)	102, 242, 539, 582, 601, 1178
CviQI	GTAC	1 cut(s)	784
DdeI	CTNAG	3 cut(s)	360, 793, 1140
DraI	TTTAAA	1 cut(s)	880
Eam1104I	CTCTTC	2 cut(s)	138, 185
EarI	CTCTTC	2 cut(s)	138, 185
EciI	GGCGGA	2 cut(s)	100, 181
Eco130I	CCWWGG	2 cut(s)	952, 1163
Eco57I	CTGAAG	3 cut(s)	963, 1078, 1209
EcoRI	GAATTC	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	814
EcoT14I	CCWWGG	2 cut(s)	952, 1163
ErhI	CCWWGG	2 cut(s)	952, 1163
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	6 cut(s)	105, 245, 542, 585, 604, 1181
FatI	CATG	6 cut(s)	101, 241, 538, 581, 600, 1177
FbaI	TGATCA	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	2 cut(s)	114, 215
FokI	GGATG	4 cut(s)	62, 285, 828, 1198
Fsp4HI	GCNGC	2 cut(s)	114, 215
FspBI	CTAG	3 cut(s)	56, 497, 1115
GlaI	GCGC	1 cut(s)	1182
GluI	GCNGC	2 cut(s)	114, 215
HaeIII	GGCC	1 cut(s)	1153
HhaI	GCGC	1 cut(s)	1183
Hin1II	CATG	6 cut(s)	105, 245, 542, 585, 604, 1181
Hin6I	GCGC	1 cut(s)	1181
HinP1I	GCGC	1 cut(s)	1181
HincII	GTYRAC	1 cut(s)	702
HindII	GTYRAC	1 cut(s)	702
HindIII	AAGCTT	1 cut(s)	425
HphI	GGTGA	5 cut(s)	328, 461, 743, 773, 968
Hpy166II	GTNNAC	3 cut(s)	15, 702, 925
Hpy188I	TCNGA	2 cut(s)	262, 988
Hpy8I	GTNNAC	3 cut(s)	15, 702, 925
HpyAV	CCTTC	4 cut(s)	19, 76, 615, 800
HpyCH4III	ACNGT	7 cut(s)	249, 445, 589, 673, 689, 871, 1031
HpyCH4IV	ACGT	2 cut(s)	640, 704
HpyCH4V	TGCA	2 cut(s)	1066, 1120
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1150
HpyF3I	CTNAG	3 cut(s)	360, 793, 1140
HpySE526I	ACGT	2 cut(s)	640, 704
Hsp92II	CATG	6 cut(s)	105, 245, 542, 585, 604, 1181
HspAI	GCGC	1 cut(s)	1181
Ksp22I	TGATCA	1 cut(s)	279
LpnPI	CCDG	8 cut(s)	198, 372, 732, 801, 828, 858, 1081, 1143
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	2 cut(s)	850, 1053
MaeI	CTAG	3 cut(s)	56, 497, 1115
MaeII	ACGT	2 cut(s)	640, 704
MaeIII	GTNAC	1 cut(s)	316
MboII	GAAGA	9 cut(s)	54, 90, 125, 172, 305, 1015, 1030, 1061, 1202
MflI	RGATCY	4 cut(s)	28, 295, 328, 811
MluCI	AATT	8 cut(s)	42, 80, 354, 364, 407, 419, 518, 875
MlyI	GAGTC	3 cut(s)	184, 313, 724
MmeI	TCCRAC	1 cut(s)	161
MseI	TTAA	5 cut(s)	300, 396, 489, 594, 879
MslI	CAYNNNNRTG	1 cut(s)	1182
MspA1I	CMGCKG	1 cut(s)	217
MspR9I	CCNGG	1 cut(s)	816
MvaI	CCWGG	1 cut(s)	816
MvnI	CGCG	1 cut(s)	1183
MwoI	GCNNNNNNNGC	1 cut(s)	1150
NlaIII	CATG	6 cut(s)	105, 245, 542, 585, 604, 1181
NlaIV	GGNNCC	1 cut(s)	813
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	316
NspI	RCATGY	1 cut(s)	604
PagI	TCATGA	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	1 cut(s)	710
PfeI	GAWTC	7 cut(s)	59, 188, 257, 263, 535, 752, 962
PfoI	TCCNGGA	1 cut(s)	814
PkrI	GCNGC	2 cut(s)	115, 216
PleI	GAGTC	3 cut(s)	183, 313, 723
PpsI	GAGTC	3 cut(s)	183, 313, 723
PshBI	ATTAAT	1 cut(s)	594
PsiI	TTATAA	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	814
PspGI	CCWGG	1 cut(s)	814
PspN4I	GGNNCC	1 cut(s)	813
PsuI	RGATCY	4 cut(s)	28, 295, 328, 811
RsaI	GTAC	1 cut(s)	785
RsaNI	GTAC	1 cut(s)	784
RseI	CAYNNNNRTG	1 cut(s)	1182
SaqAI	TTAA	5 cut(s)	300, 396, 489, 594, 879
SatI	GCNGC	2 cut(s)	114, 215
SchI	GAGTC	3 cut(s)	184, 313, 724
ScrFI	CCNGG	1 cut(s)	816
SfaNI	GCATC	2 cut(s)	850, 1053
SmiMI	CAYNNNNRTG	1 cut(s)	1182
SmlI	CTYRAG	2 cut(s)	787, 932
SmoI	CTYRAG	2 cut(s)	787, 932
Sse9I	AATT	8 cut(s)	42, 80, 354, 364, 407, 419, 518, 875
SsiI	CCGC	5 cut(s)	111, 114, 192, 217, 650
SspMI	CTAG	3 cut(s)	56, 497, 1115
StyD4I	CCNGG	1 cut(s)	814
StyI	CCWWGG	2 cut(s)	952, 1163
TaaI	ACNGT	7 cut(s)	249, 445, 589, 673, 689, 871, 1031
TaiI	ACGT	2 cut(s)	643, 707
TaqI	TCGA	9 cut(s)	69, 255, 288, 381, 403, 577, 633, 837, 1072
TasI	AATT	8 cut(s)	42, 80, 354, 364, 407, 419, 518, 875
TatI	WGTACW	1 cut(s)	783
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	7 cut(s)	59, 188, 257, 263, 535, 752, 962
Tru1I	TTAA	5 cut(s)	300, 396, 489, 594, 879
Tru9I	TTAA	5 cut(s)	300, 396, 489, 594, 879
TscAI	CASTG	1 cut(s)	807
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	5 cut(s)	90, 258, 419, 527, 872
TspGWI	ACGGA	4 cut(s)	74, 79, 194, 321
TspRI	CASTG	1 cut(s)	807
VspI	ATTAAT	1 cut(s)	594
XapI	RAATTY	4 cut(s)	364, 419, 518, 875
XbaI	TCTAGA	2 cut(s)	55, 496
XceI	RCATGY	1 cut(s)	604
XmiI	GTMKAC	1 cut(s)	14
XspI	CTAG	3 cut(s)	56, 497, 1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.