Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009182

Physical Location & Seq

Genomic Coordinates Forward (+)

17599852 .. 17602372

Gene Structure 2521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G172400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGCCGATTGGTCTCAACTCCCCAAGGAGCTCCTAGAGGAGATCGCTAAGCGCCTAGAGAGCCCCTTCTATCTGCTCCGTTTCCGATCCGTTTGCTCCTCATGGCGGTCTTCAGTCTCTTCCAGACCTCGCCGTTTACCAGGTCGGTTTCCGTTCCTCACAAACCATGGCATCTGCGACACCACCTTAGGTTTCCACCTCTCGCAGCGCACCGTATTCCTCATGGGGTTGCCTAATTTCCGCAACCAAACAAACCCAGATTGCTGGCTGGTCAAGATCGAAGAAGACGTGCCTGGGAGAATGCATTTGCTGAACCCACTCTCGCGGTTTCAGCTGAAGCCTCTGCCTGAATCTTTCCCAAAGGTATTGGATTTATCCAAGTTTTGGGTTTTTGAGTTGGGTGGAGAATATGTTCTTCACTATGTGCATTTTAGGCCTTTTGTTAATGGTAACTCTTTTGGTGATGCTGGCAATTTGTACATGGAAAAGGTGGTTTTTATGTTTTTGGGTTCCGAAAGCAATGATTTTGTGTTGCTTACCATTCACGTGTCTGGGAAATTAGCTATGTTTAAGTCTGAGGATAAGAGGTGGACTATAATTCACGATATGCCTTCGCCTTATGATGATGTTATACTGTTTAAAGGACAATTTTATGCCGTTGATGGCACCGGACGTACTGTGATCGTCGGTTTGCACTCAAATCTGAATGTAGTTGCAAATCCTGTGTTTGGTGGTGATAAGAAGTTCTTGGTTGAGTCAAGTGGTGAATTGTTGGTGGTTGATATGTATTTGAGCATGGCTCCAGAAACCGATTTGGATGTTGATGATGAAATCATCCAATTGCAATTCAATGGTTGTTTGACTGAAAGAACAGTTAGGTTCAAGGTTTTTAAGTTGGATAGAGAGGGGAAGAGATTGGTCGAATTGAAAAGCTTGGGGGATAGGGTGTTGTTTTTGGGGGATGATTGCACCTTTTCTGCCTCGGCTTCAGAGTTATCTGGTTGTAAAGGGAATTGTATATTTTTTACAGATAATTTCTTCTATACAAGTGGTGAAGATGAAGGCGTGTTCAAGGGCCGTGATATAGGTGTGTTTGACTTGGATGATGGTAGTATTGCACCTTTATCTGATTATCCAGAGTATTCAAAGCTGTTTTGGCCACCCCCTGACTGGATTGCACCAACACAAGTGCAAAGTCAGTTTGAAGAATTGGCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

407

Amino Acids

46.21

Weight (kDa)

5.11

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17030 AT2G17036 AT2G17036
fragaria_vesca	FvH4_2g15930 FvH4_2g15930 FvH4_2g15930
malus_domestica	MD05G1128300.v1.1
prunus_persica	Prupe.8G172400_v2.0.a1 Prupe.8G172400_v2.0.a1
pyrus_communis	pycom05g12420
rosa_chinensis	RchiOBHm_Chr6g0279451
rosa_laevigata	RLG00000013146
rosa_multiflora	Rmu_co8218300.1_g000001 Rmu_sc0000274.1_g000005 Rmu_sc0034735.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188900
rosa_rugosa	Rorug06G0124300
rosa_samantha	Rh6AG233600 Rh6BG237900 Rh6CG239900 Rh6DG231600
rosa_wichuraiana	Rw6G020380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	665
AccB7I	CCANNNNNTGG	1 cut(s)	384
AccII	CGCG	1 cut(s)	325
AciI	CCGC	3 cut(s)	106, 241, 325
AclWI	GGATC	1 cut(s)	81
AcoI	YGGCCR	2 cut(s)	3, 1157
AcuI	CTGAAG	3 cut(s)	96, 356, 972
AcvI	CACGTG	1 cut(s)	547
AdeI	CACNNNGTG	1 cut(s)	424
AfaI	GTAC	2 cut(s)	479, 676
AfiI	CCNNNNNNNGG	4 cut(s)	105, 384, 728, 1170
AflIII	ACRYGT	1 cut(s)	546
AgsI	TTSAA	6 cut(s)	850, 883, 928, 1072, 1146, 1205
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	2 cut(s)	139, 292
AloI	GAACNNNNNNTCC	2 cut(s)	396, 428
AluBI	AGCT	5 cut(s)	31, 334, 563, 933, 1150
AluI	AGCT	5 cut(s)	31, 334, 563, 933, 1150
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	2 cut(s)	18, 121
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	4 cut(s)	3, 434, 1075, 1157
ApeKI	GCWGC	1 cut(s)	205
Asp700I	GAANNNNTTC	1 cut(s)	411
AspLEI	GCGC	2 cut(s)	54, 210
AspS9I	GGNCC	1 cut(s)	1075
AsuHPI	GGTGA	4 cut(s)	473, 746, 776, 1064
AxyI	CCTNAGG	1 cut(s)	187
BalI	TGGCCA	1 cut(s)	1159
BanI	GGYRCC	1 cut(s)	665
BanII	GRGCYC	2 cut(s)	33, 65
BbrPI	CACGTG	1 cut(s)	547
BbsI	GAAGAC	2 cut(s)	102, 291
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	2 cut(s)	656, 1100
BceAI	ACGGC	3 cut(s)	117, 641, 1062
BcgI	CGANNNNNNTGC	2 cut(s)	75, 109
BciT130I	CCWGG	2 cut(s)	141, 294
BcoDI	GTCTC	2 cut(s)	18, 121
BfaI	CTAG	2 cut(s)	35, 56
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	1 cut(s)	206
BlpI	GCTNAGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	207
Bme1390I	CCNGG	2 cut(s)	141, 294
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	1075
BmiI	GGNNCC	3 cut(s)	511, 667, 801
BmrFI	CCNGG	2 cut(s)	141, 294
BmsI	GCATC	2 cut(s)	180, 454
BpiI	GAAGAC	2 cut(s)	102, 291
BplI	GAGNNNNNCTC	2 cut(s)	784, 816
BpmI	CTGGAG	1 cut(s)	786
Bpu1102I	GCTNAGC	1 cut(s)	48
BsaAI	YACGTR	1 cut(s)	547
BsaI	GGTCTC	1 cut(s)	18
BsaJI	CCNNGG	4 cut(s)	24, 166, 293, 981
BsaWI	WCCGGW	1 cut(s)	668
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 384, 728, 1170
Bse1I	ACTGG	1 cut(s)	1175
Bse21I	CCTNAGG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	526
BseBI	CCWGG	2 cut(s)	141, 294
BseDI	CCNNGG	4 cut(s)	24, 166, 293, 981
BseGI	GGATG	4 cut(s)	823, 834, 967, 1108
BseLI	CCNNNNNNNGG	4 cut(s)	105, 384, 728, 1170
BseMI	GCAATG	1 cut(s)	526
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	1 cut(s)	1175
BseRI	GAGGAG	2 cut(s)	53, 88
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	325
BshFI	GGCC	4 cut(s)	5, 436, 1077, 1159
BshNI	GGYRCC	1 cut(s)	665
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	669
BslI	CCNNNNNNNGG	4 cut(s)	105, 384, 728, 1170
BsmAI	GTCTC	2 cut(s)	18, 121
BsmI	GAATGC	1 cut(s)	306
BsnI	GGCC	4 cut(s)	5, 436, 1077, 1159
Bso31I	GGTCTC	1 cut(s)	18
Bsp1286I	GDGCHC	2 cut(s)	33, 65
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	4 cut(s)	42, 86, 276, 681
Bsp1720I	GCTNAGC	1 cut(s)	48
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	3 cut(s)	106, 241, 325
BspANI	GGCC	4 cut(s)	5, 436, 1077, 1159
BspCNI	CTCAG	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	325
BspLI	GGNNCC	3 cut(s)	511, 667, 801
BspPI	GGATC	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	665
BspTNI	GGTCTC	1 cut(s)	18
BsrDI	GCAATG	1 cut(s)	526
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	1175
BssECI	CCNNGG	4 cut(s)	24, 166, 293, 981
BssMI	GATC	4 cut(s)	42, 86, 276, 681
BssT1I	CCWWGG	2 cut(s)	24, 166
Bst2UI	CCWGG	2 cut(s)	141, 294
Bst4CI	ACNGT	4 cut(s)	214, 636, 679, 874
Bst6I	CTCTTC	2 cut(s)	124, 905
BstAUI	TGTACA	1 cut(s)	477
BstBAI	YACGTR	1 cut(s)	547
BstC8I	GCNNGC	2 cut(s)	266, 469
BstDEI	CTNAG	3 cut(s)	48, 187, 576
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	4 cut(s)	823, 834, 967, 1108
BstFNI	CGCG	1 cut(s)	325
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	54, 210
BstKTI	GATC	4 cut(s)	45, 89, 279, 684
BstMAI	GTCTC	2 cut(s)	18, 121
BstMBI	GATC	4 cut(s)	42, 86, 276, 681
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 331, 433, 1156
BstNI	CCWGG	2 cut(s)	141, 294
BstSCI	CCNGG	2 cut(s)	139, 292
BstUI	CGCG	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	217
BstV2I	GAAGAC	2 cut(s)	102, 291
BstXI	CCANNNNNNTGG	1 cut(s)	264
Bsu36I	CCTNAGG	1 cut(s)	187
BsuRI	GGCC	4 cut(s)	5, 436, 1077, 1159
BtgI	CCRYGG	1 cut(s)	166
BtrI	CACGTC	1 cut(s)	289
BtsCI	GGATG	4 cut(s)	823, 834, 967, 1108
Cac8I	GCNNGC	2 cut(s)	266, 469
CfoI	GCGC	2 cut(s)	54, 210
Cfr13I	GGNCC	1 cut(s)	1075
CsiI	ACCWGGT	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	478, 675
CviAII	CATG	5 cut(s)	102, 167, 223, 481, 796
CviQI	GTAC	2 cut(s)	478, 675
DdeI	CTNAG	3 cut(s)	48, 187, 576
DpnI	GATC	4 cut(s)	44, 88, 278, 683
DpnII	GATC	4 cut(s)	42, 86, 276, 681
DraI	TTTAAA	1 cut(s)	640
DraIII	CACNNNGTG	1 cut(s)	424
EaeI	YGGCCR	2 cut(s)	3, 1157
Eam1104I	CTCTTC	2 cut(s)	124, 905
EarI	CTCTTC	2 cut(s)	124, 905
Ecl136II	GAGCTC	1 cut(s)	31
Eco130I	CCWWGG	2 cut(s)	24, 166
Eco147I	AGGCCT	1 cut(s)	436
Eco24I	GRGCYC	2 cut(s)	33, 65
Eco31I	GGTCTC	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	3 cut(s)	96, 356, 972
Eco72I	CACGTG	1 cut(s)	547
Eco81I	CCTNAGG	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	31
EcoRII	CCWGG	2 cut(s)	139, 292
EcoT14I	CCWWGG	2 cut(s)	24, 166
EcoT22I	ATGCAT	1 cut(s)	306
EcoT38I	GRGCYC	2 cut(s)	33, 65
ErhI	CCWWGG	2 cut(s)	24, 166
FaeI	CATG	5 cut(s)	105, 170, 226, 484, 799
FalI	AAGNNNNNCTT	2 cut(s)	731, 763
FatI	CATG	5 cut(s)	101, 166, 222, 480, 795
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	4 cut(s)	821, 830, 974, 1115
FriOI	GRGCYC	2 cut(s)	33, 65
Fsp4HI	GCNGC	1 cut(s)	206
FspBI	CTAG	2 cut(s)	35, 56
GlaI	GCGC	2 cut(s)	53, 209
GluI	GCNGC	1 cut(s)	206
GsuI	CTGGAG	1 cut(s)	786
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	4 cut(s)	5, 436, 1077, 1159
HapII	CCGG	1 cut(s)	669
HhaI	GCGC	2 cut(s)	54, 210
Hin1II	CATG	5 cut(s)	105, 170, 226, 484, 799
Hin6I	GCGC	2 cut(s)	52, 208
HinP1I	GCGC	2 cut(s)	52, 208
HindIII	AAGCTT	1 cut(s)	931
HinfI	GANTC	2 cut(s)	350, 755
HpaII	CCGG	1 cut(s)	669
HphI	GGTGA	4 cut(s)	473, 746, 776, 1064
Hpy166II	GTNNAC	2 cut(s)	137, 591
Hpy188I	TCNGA	6 cut(s)	86, 514, 577, 705, 991, 1129
Hpy188III	TCNNGA	5 cut(s)	123, 274, 602, 803, 1136
Hpy8I	GTNNAC	2 cut(s)	137, 591
Hpy99I	CGWCG	1 cut(s)	689
HpyAV	CCTTC	3 cut(s)	76, 621, 1055
HpyCH4III	ACNGT	4 cut(s)	214, 636, 679, 874
HpyCH4IV	ACGT	3 cut(s)	288, 546, 673
HpyCH4V	TGCA	9 cut(s)	304, 427, 694, 716, 844, 969, 1118, 1178, 1192
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 331, 433, 1156
HpyF3I	CTNAG	3 cut(s)	48, 187, 576
HpySE526I	ACGT	3 cut(s)	288, 546, 673
Hsp92II	CATG	5 cut(s)	105, 170, 226, 484, 799
HspAI	GCGC	2 cut(s)	52, 208
Kzo9I	GATC	4 cut(s)	42, 86, 276, 681
LmnI	GCTCC	5 cut(s)	28, 36, 81, 101, 805
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	2 cut(s)	180, 454
MabI	ACCWGGT	1 cut(s)	139
MaeI	CTAG	2 cut(s)	35, 56
MaeII	ACGT	3 cut(s)	288, 546, 673
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	4 cut(s)	44, 88, 278, 683
MboI	GATC	4 cut(s)	42, 86, 276, 681
MboII	GAAGA	9 cut(s)	102, 111, 293, 296, 407, 922, 1030, 1067, 1217
MfeI	CAATTG	1 cut(s)	839
MhlI	GDGCHC	2 cut(s)	33, 65
MlsI	TGGCCA	1 cut(s)	1159
MluNI	TGGCCA	1 cut(s)	1159
MlyI	GAGTC	1 cut(s)	764
MmeI	TCCRAC	1 cut(s)	876
Mox20I	TGGCCA	1 cut(s)	1159
Mph1103I	ATGCAT	1 cut(s)	306
MroXI	GAANNNNTTC	1 cut(s)	411
MscI	TGGCCA	1 cut(s)	1159
MseI	TTAA	4 cut(s)	444, 570, 639, 891
MslI	CAYNNNNRTG	1 cut(s)	545
Msp20I	TGGCCA	1 cut(s)	1159
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	1 cut(s)	669
MspR9I	CCNGG	2 cut(s)	141, 294
MunI	CAATTG	1 cut(s)	839
Mva1269I	GAATGC	1 cut(s)	306
MvaI	CCWGG	2 cut(s)	141, 294
MvnI	CGCG	1 cut(s)	325
MwoI	GCNNNNNNNGC	4 cut(s)	60, 331, 433, 1156
NcoI	CCATGG	1 cut(s)	166
NdeII	GATC	4 cut(s)	42, 86, 276, 681
NlaIII	CATG	5 cut(s)	105, 170, 226, 484, 799
NlaIV	GGNNCC	3 cut(s)	511, 667, 801
NmeAIII	GCCGAG	1 cut(s)	962
NsiI	ATGCAT	1 cut(s)	306
PceI	AGGCCT	1 cut(s)	436
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PctI	GAATGC	1 cut(s)	306
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	350
PflMI	CCANNNNNTGG	1 cut(s)	384
PkrI	GCNGC	1 cut(s)	207
PleI	GAGTC	1 cut(s)	763
PmaCI	CACGTG	1 cut(s)	547
PmlI	CACGTG	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	763
Ppu21I	YACGTR	1 cut(s)	547
Psp124BI	GAGCTC	1 cut(s)	33
Psp6I	CCWGG	2 cut(s)	139, 292
PspCI	CACGTG	1 cut(s)	547
PspGI	CCWGG	2 cut(s)	139, 292
PspN4I	GGNNCC	3 cut(s)	511, 667, 801
PspPI	GGNCC	1 cut(s)	1075
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	2 cut(s)	479, 676
RsaNI	GTAC	2 cut(s)	478, 675
RseI	CAYNNNNRTG	1 cut(s)	545
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	4 cut(s)	444, 570, 639, 891
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	4 cut(s)	42, 86, 276, 681
Sau96I	GGNCC	1 cut(s)	1075
SchI	GAGTC	1 cut(s)	764
ScrFI	CCNGG	2 cut(s)	141, 294
SduI	GDGCHC	2 cut(s)	33, 65
SexAI	ACCWGGT	1 cut(s)	139
SfaNI	GCATC	2 cut(s)	180, 454
SmiMI	CAYNNNNRTG	1 cut(s)	545
SseBI	AGGCCT	1 cut(s)	436
SsiI	CCGC	3 cut(s)	106, 241, 325
SspMI	CTAG	2 cut(s)	35, 56
SstI	GAGCTC	1 cut(s)	33
StuI	AGGCCT	1 cut(s)	436
StyD4I	CCNGG	2 cut(s)	139, 292
StyI	CCWWGG	2 cut(s)	24, 166
TaaI	ACNGT	4 cut(s)	214, 636, 679, 874
TaiI	ACGT	3 cut(s)	291, 549, 676
TaqI	TCGA	2 cut(s)	279, 921
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	4 cut(s)	444, 570, 639, 891
Tru9I	TTAA	4 cut(s)	444, 570, 639, 891
TseI	GCWGC	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	843, 1074
TspGWI	ACGGA	3 cut(s)	68, 79, 141
Van91I	CCANNNNNTGG	1 cut(s)	384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1167
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	2 cut(s)	35, 56
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.