RLG00000013146

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
26750599 .. 26752870
2272 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013146

Sequence Viewer

Length: 1209 bp
ATGGCGGACTGGTCTCTACTCCCTAGAGAACTCCTGGAGGACATCGCCAAACGCCTCGACAACTCATTCGATCTCCTCCGTTTCCGATCCGTCTGCTCCTCATGGCGATCATCAATCCCTTCCCGACCTCGCCGCTTACCCGGCCGATTTTCCTTCCTCACAAACTACGGCATCTCCGACTCCACCCTGGGTTTCCACCTCTGTAAACGCACCGTTTTCCTCATCGGACCGCTCAATAGCCCGGATCGGTGGCTGGTCAAGATCGAAGAGGACGTGCCCGGCCGCAGGCACCTGCTGAATCCCCTCTCGCGGTTACCGCTGAGTCCTCTGCCGGAGGCTTTCCCGAAGGTAATGGATTTATCGAGGCTTTGGATTTTCGATTTGGGGGAGGAGTATGTTCTTCATTATGTGAATTTTAGGCCTTTGGTTAATGCTTTGGGCGGTGCTGCTAATTTGTACATGGAAAAGGTGGTGTTTATGTGTTTGGGGGATGAAAGCAGTGATTTTGTGTTGCTTACGATCCATGTGTCTGGGAGATTGGCAATTTTTAACTCTGTGAAGAAGAAGTGGACTATAATTCATGATATGCCGTCGCCTTATGATGATGTTATATTGTTTAAGGGCCAGTTTTATGCTGTTGATGGCACAGGAAGGACTGTGGTGGTTGGCTTGGACTCAAAAAATCCGAGTTTGGCTGCCAATCCGGTGTATGGTGGTGACAAGAAGTTTTTGGTGGAGTCGAGGGGTGAGTTGTTGGTGGTGGATATGTACTTGAGCACGGATGAGGAGGTGGAGTGCGACGGGGATGATGAACTGTCTCAAGAGCAATTGGATGGGTGCATTTACGAGAGGACGGTGAAGTTTAAGGTTTATCAGATGGATGAAGGAGGGCAGAAGTTGGTGCGGATGAAAAGCTTGGGGGATAGGGTGTTGTTTTTGGGGGATGACTGCACATTTTCTGCCTCGGCTTCGGAGTTGTCCGGCTGTAAAGGGAATTGTATATATTTTACGGATAATTTCTTCTATACAAGTGGTGAAGAAGAAGGGACGTTCAAGGATCGTGATATAGGTGTGTTTGACTTGGATAATGGTACTATTGCCCCCTTATCTGATTATCCTGAGTCTTCAAAGCTGTTTTGGCCACCCCCTGTGTGGCTTTCATCGACAACATCCCAGGTGCAAACCGAGTTTGAAGGACTAGCTTTGTGA

Protein Analysis

403

Amino Acids

45.34

Weight (kDa)

4.87

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 80 - 360 4e-51 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 300
Acc36I ACCTGC 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 288
AccBSI CCGCTC 1 cut(s) 232
AccII CGCG 1 cut(s) 310
AciI CCGC 8 cut(s) 5, 133, 230, 283, 310, 317, 441, 904
AclWI GGATC 4 cut(s) 81, 252, 514, 1065
AcoI YGGCCR 3 cut(s) 142, 280, 1139
AcsI RAATTY 1 cut(s) 412
AfaI GTAC 3 cut(s) 458, 770, 1093
AfiI CCNNNNNNNGG 4 cut(s) 285, 309, 710, 1152
AgsI TTSAA 3 cut(s) 1054, 1128, 1193
AjiI CACGTC 1 cut(s) 274
AjnI CCWGG 3 cut(s) 33, 186, 1173
AluBI AGCT 3 cut(s) 915, 1132, 1202
AluI AGCT 3 cut(s) 915, 1132, 1202
Alw21I GWGCWC 1 cut(s) 779
Alw26I GTCTC 2 cut(s) 18, 822
AlwI GGATC 4 cut(s) 81, 252, 514, 1065
AoxI GGCC 5 cut(s) 142, 280, 419, 622, 1139
ApeKI GCWGC 2 cut(s) 446, 695
ApoI RAATTY 1 cut(s) 412
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspS9I GGNCC 2 cut(s) 227, 622
AsuC2I CCSGG 3 cut(s) 141, 242, 279
AsuHPI GGTGA 4 cut(s) 728, 758, 868, 1046
AvaII GGWCC 1 cut(s) 227
BaeGI GKGCMC 1 cut(s) 279
BalI TGGCCA 1 cut(s) 1141
BanI GGYRCC 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 1116
Bbv12I GWGCWC 1 cut(s) 779
BbvI GCAGC 2 cut(s) 433, 682
BccI CCATC 3 cut(s) 635, 827, 871
BceAI ACGGC 2 cut(s) 184, 574
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BciT130I CCWGG 3 cut(s) 35, 188, 1175
BcnI CCSGG 3 cut(s) 141, 242, 279
BcoDI GTCTC 2 cut(s) 18, 822
BfaI CTAG 2 cut(s) 24, 1199
BfuAI ACCTGC 1 cut(s) 300
BisI GCNGC 4 cut(s) 133, 283, 447, 696
BlsI GCNGC 4 cut(s) 134, 284, 448, 697
Bme1390I CCNGG 6 cut(s) 35, 141, 188, 242, 279, 1175
Bme18I GGWCC 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 227, 622
BmiI GGNNCC 1 cut(s) 290
BmrFI CCNGG 6 cut(s) 35, 141, 188, 242, 279, 1175
BmsI GCATC 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 1116
BpmI CTGGAG 1 cut(s) 56
BpuEI CTTGAG 2 cut(s) 793, 804
BpuMI CCSGG 3 cut(s) 141, 242, 279
BsaI GGTCTC 1 cut(s) 18
BsaJI CCNNGG 4 cut(s) 186, 187, 963, 1173
BsaWI WCCGGW 1 cut(s) 703
BsaXI ACNNNNNCTCC 4 cut(s) 158, 188, 779, 809
Bsc4I CCNNNNNNNGG 4 cut(s) 285, 309, 710, 1152
Bse1I ACTGG 2 cut(s) 14, 625
BseBI CCWGG 3 cut(s) 35, 188, 1175
BseDI CCNNGG 4 cut(s) 186, 187, 963, 1173
BseGI GGATG 8 cut(s) 496, 787, 811, 838, 886, 912, 949, 1169
BseLI CCNNNNNNNGG 4 cut(s) 285, 309, 710, 1152
BseMII CTCAG 2 cut(s) 311, 1110
BseNI ACTGG 2 cut(s) 14, 625
BseRI GAGGAG 4 cut(s) 65, 88, 404, 800
BseSI GKGCMC 1 cut(s) 279
BseX3I CGGCCG 2 cut(s) 142, 280
BseXI GCAGC 2 cut(s) 433, 682
BsgI GTGCAG 1 cut(s) 934
Bsh1236I CGCG 1 cut(s) 310
Bsh1285I CGRYCG 2 cut(s) 145, 283
BshFI GGCC 5 cut(s) 144, 282, 421, 624, 1141
BshNI GGYRCC 1 cut(s) 288
BsiEI CGRYCG 2 cut(s) 145, 283
BsiHKAI GWGCWC 1 cut(s) 779
BsiSI CCGG 6 cut(s) 141, 242, 279, 332, 704, 981
BslFI GGGAC 1 cut(s) 1060
BslI CCNNNNNNNGG 4 cut(s) 285, 309, 710, 1152
BsmAI GTCTC 2 cut(s) 18, 822
BsmFI GGGAC 1 cut(s) 1060
BsnI GGCC 5 cut(s) 144, 282, 421, 624, 1141
Bso31I GGTCTC 1 cut(s) 18
Bsp1286I GDGCHC 2 cut(s) 279, 779
Bsp1407I TGTACA 1 cut(s) 456
Bsp143I GATC 7 cut(s) 70, 86, 107, 244, 261, 519, 1057
BspACI CCGC 8 cut(s) 5, 133, 230, 283, 310, 317, 441, 904
BspANI GGCC 5 cut(s) 144, 282, 421, 624, 1141
BspCNI CTCAG 2 cut(s) 312, 1111
BspFNI CGCG 1 cut(s) 310
BspHI TCATGA 1 cut(s) 580
BspLI GGNNCC 1 cut(s) 290
BspMI ACCTGC 1 cut(s) 300
BspPI GGATC 4 cut(s) 81, 252, 514, 1065
BspT107I GGYRCC 1 cut(s) 288
BspTNI GGTCTC 1 cut(s) 18
BsrBI CCGCTC 1 cut(s) 232
BsrGI TGTACA 1 cut(s) 456
BsrI ACTGG 2 cut(s) 14, 625
BssECI CCNNGG 4 cut(s) 186, 187, 963, 1173
BssMI GATC 7 cut(s) 70, 86, 107, 244, 261, 519, 1057
Bst2UI CCWGG 3 cut(s) 35, 188, 1175
Bst4CI ACNGT 4 cut(s) 214, 658, 816, 856
Bst6I CTCTTC 1 cut(s) 261
BstAUI TGTACA 1 cut(s) 456
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 2 cut(s) 320, 1119
BstEII GGTNACC 1 cut(s) 312
BstF5I GGATG 8 cut(s) 496, 787, 811, 838, 886, 912, 949, 1169
BstFNI CGCG 1 cut(s) 310
BstKTI GATC 7 cut(s) 73, 89, 110, 247, 264, 522, 1060
BstMAI GTCTC 2 cut(s) 18, 822
BstMBI GATC 7 cut(s) 70, 86, 107, 244, 261, 519, 1057
BstMCI CGRYCG 2 cut(s) 145, 283
BstMWI GCNNNNNNNGC 3 cut(s) 141, 316, 1138
BstNI CCWGG 3 cut(s) 35, 188, 1175
BstPI GGTNACC 1 cut(s) 312
BstSCI CCNGG 6 cut(s) 33, 139, 186, 240, 277, 1173
BstSLI GKGCMC 1 cut(s) 279
BstUI CGCG 1 cut(s) 310
BstV1I GCAGC 2 cut(s) 433, 682
BstV2I GAAGAC 1 cut(s) 1116
BstXI CCANNNNNNTGG 1 cut(s) 530
BstZI CGGCCG 2 cut(s) 142, 280
BsuRI GGCC 5 cut(s) 144, 282, 421, 624, 1141
BtgZI GCGATG 1 cut(s) 28
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 8 cut(s) 496, 787, 811, 838, 886, 912, 949, 1169
BtsI GCAGTG 1 cut(s) 505
BtsIMutI CAGTG 1 cut(s) 505
BveI ACCTGC 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 287
CciI TCATGA 1 cut(s) 580
Cfr13I GGNCC 2 cut(s) 227, 622
CpoI CGGWCCG 1 cut(s) 227
Csp6I GTAC 3 cut(s) 457, 769, 1092
CspI CGGWCCG 1 cut(s) 227
CviAII CATG 4 cut(s) 102, 460, 524, 581
CviQI GTAC 3 cut(s) 457, 769, 1092
DdeI CTNAG 2 cut(s) 320, 1119
DpnI GATC 7 cut(s) 72, 88, 109, 246, 263, 521, 1059
DpnII GATC 7 cut(s) 70, 86, 107, 244, 261, 519, 1057
EaeI YGGCCR 3 cut(s) 142, 280, 1139
EagI CGGCCG 2 cut(s) 142, 280
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
EciI GGCGGA 1 cut(s) 20
EclXI CGGCCG 2 cut(s) 142, 280
Eco147I AGGCCT 1 cut(s) 421
Eco31I GGTCTC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 227
Eco52I CGGCCG 2 cut(s) 142, 280
Eco91I GGTNACC 1 cut(s) 312
EcoO65I GGTNACC 1 cut(s) 312
EcoRII CCWGG 3 cut(s) 33, 186, 1173
FaeI CATG 4 cut(s) 105, 463, 527, 584
FaqI GGGAC 1 cut(s) 1060
FatI CATG 4 cut(s) 101, 459, 523, 580
Fnu4HI GCNGC 4 cut(s) 133, 283, 447, 696
FokI GGATG 8 cut(s) 503, 794, 818, 845, 893, 919, 956, 1156
Fsp4HI GCNGC 4 cut(s) 133, 283, 447, 696
FspBI CTAG 2 cut(s) 24, 1199
GluI GCNGC 4 cut(s) 133, 283, 447, 696
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 5 cut(s) 144, 282, 421, 624, 1141
HapII CCGG 6 cut(s) 141, 242, 279, 332, 704, 981
Hin1II CATG 4 cut(s) 105, 463, 527, 584
HindIII AAGCTT 1 cut(s) 913
HinfI GANTC 6 cut(s) 179, 298, 322, 674, 737, 1121
HpaII CCGG 6 cut(s) 141, 242, 279, 332, 704, 981
HphI GGTGA 4 cut(s) 728, 758, 868, 1046
Hpy166II GTNNAC 2 cut(s) 206, 570
Hpy188I TCNGA 7 cut(s) 86, 178, 227, 687, 876, 973, 1111
Hpy188III TCNNGA 7 cut(s) 123, 259, 343, 581, 821, 1061, 1118
Hpy8I GTNNAC 2 cut(s) 206, 570
Hpy99I CGWCG 2 cut(s) 595, 803
HpyAV CCTTC 7 cut(s) 129, 163, 340, 645, 878, 1037, 1187
HpyCH4III ACNGT 4 cut(s) 214, 658, 816, 856
HpyCH4IV ACGT 2 cut(s) 273, 1049
HpyCH4V TGCA 3 cut(s) 840, 951, 1180
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 316, 1138
HpyF3I CTNAG 2 cut(s) 320, 1119
HpySE526I ACGT 2 cut(s) 273, 1049
Hsp92II CATG 4 cut(s) 105, 463, 527, 584
Kzo9I GATC 7 cut(s) 70, 86, 107, 244, 261, 519, 1057
LmnI GCTCC 1 cut(s) 101
Lsp1109I GCAGC 2 cut(s) 433, 682
LweI GCATC 1 cut(s) 180
MaeI CTAG 2 cut(s) 24, 1199
MaeII ACGT 2 cut(s) 273, 1049
MaeIII GTNAC 2 cut(s) 312, 716
MalI GATC 7 cut(s) 72, 88, 109, 246, 263, 521, 1059
MbiI CCGCTC 1 cut(s) 232
MboI GATC 7 cut(s) 70, 86, 107, 244, 261, 519, 1057
MboII GAAGA 8 cut(s) 278, 392, 571, 574, 1012, 1049, 1052, 1116
MfeI CAATTG 1 cut(s) 827
MhlI GDGCHC 2 cut(s) 279, 779
MlsI TGGCCA 1 cut(s) 1141
MluCI AATT 7 cut(s) 412, 451, 543, 576, 827, 994, 1015
MluNI TGGCCA 1 cut(s) 1141
MlyI GAGTC 5 cut(s) 173, 331, 668, 746, 1130
MmeI TCCRAC 1 cut(s) 201
Mox20I TGGCCA 1 cut(s) 1141
MscI TGGCCA 1 cut(s) 1141
MseI TTAA 4 cut(s) 429, 549, 618, 864
Msp20I TGGCCA 1 cut(s) 1141
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 6 cut(s) 141, 242, 279, 332, 704, 981
MspR9I CCNGG 6 cut(s) 35, 141, 188, 242, 279, 1175
MunI CAATTG 1 cut(s) 827
MvaI CCWGG 3 cut(s) 35, 188, 1175
MvnI CGCG 1 cut(s) 310
MwoI GCNNNNNNNGC 3 cut(s) 141, 316, 1138
NciI CCSGG 3 cut(s) 141, 242, 279
NdeII GATC 7 cut(s) 70, 86, 107, 244, 261, 519, 1057
NlaIII CATG 4 cut(s) 105, 463, 527, 584
NlaIV GGNNCC 1 cut(s) 290
NmeAIII GCCGAG 1 cut(s) 944
NmuCI GTSAC 1 cut(s) 716
PagI TCATGA 1 cut(s) 580
PaqCI CACCTGC 1 cut(s) 300
PasI CCCWGGG 1 cut(s) 187
PceI AGGCCT 1 cut(s) 421
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 270
PfeI GAWTC 1 cut(s) 298
PfoI TCCNGGA 1 cut(s) 33
PkrI GCNGC 4 cut(s) 134, 284, 448, 697
PleI GAGTC 5 cut(s) 173, 330, 668, 745, 1129
PpsI GAGTC 5 cut(s) 173, 330, 668, 745, 1129
Psp6I CCWGG 3 cut(s) 33, 186, 1173
PspEI GGTNACC 1 cut(s) 312
PspGI CCWGG 3 cut(s) 33, 186, 1173
PspN4I GGNNCC 1 cut(s) 290
PspPI GGNCC 2 cut(s) 227, 622
RsaI GTAC 3 cut(s) 458, 770, 1093
RsaNI GTAC 3 cut(s) 457, 769, 1092
Rsr2I CGGWCCG 1 cut(s) 227
RsrII CGGWCCG 1 cut(s) 227
SaqAI TTAA 4 cut(s) 429, 549, 618, 864
SatI GCNGC 4 cut(s) 133, 283, 447, 696
Sau3AI GATC 7 cut(s) 70, 86, 107, 244, 261, 519, 1057
Sau96I GGNCC 2 cut(s) 227, 622
SchI GAGTC 5 cut(s) 173, 331, 668, 746, 1130
ScrFI CCNGG 6 cut(s) 35, 141, 188, 242, 279, 1175
SduI GDGCHC 2 cut(s) 279, 779
SfaNI GCATC 1 cut(s) 180
SinI GGWCC 1 cut(s) 227
SmlI CTYRAG 2 cut(s) 772, 819
SmoI CTYRAG 2 cut(s) 772, 819
Sse9I AATT 7 cut(s) 412, 451, 543, 576, 827, 994, 1015
SseBI AGGCCT 1 cut(s) 421
SsiI CCGC 8 cut(s) 5, 133, 230, 283, 310, 317, 441, 904
SspMI CTAG 2 cut(s) 24, 1199
StuI AGGCCT 1 cut(s) 421
StyD4I CCNGG 6 cut(s) 33, 139, 186, 240, 277, 1173
TaaI ACNGT 4 cut(s) 214, 658, 816, 856
TaiI ACGT 2 cut(s) 276, 1052
TaqI TCGA 7 cut(s) 57, 69, 264, 362, 378, 740, 1163
TasI AATT 7 cut(s) 412, 451, 543, 576, 827, 994, 1015
TatI WGTACW 2 cut(s) 456, 768
TauI GCSGC 2 cut(s) 135, 285
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 4 cut(s) 429, 549, 618, 864
Tru9I TTAA 4 cut(s) 429, 549, 618, 864
TscAI CASTG 1 cut(s) 505
TseFI GTSAC 1 cut(s) 716
TseI GCWGC 2 cut(s) 446, 695
Tsp45I GTSAC 1 cut(s) 716
TspDTI ATGAA 7 cut(s) 392, 507, 569, 825, 897, 923, 1149
TspGWI ACGGA 4 cut(s) 68, 79, 794, 1025
TspRI CASTG 1 cut(s) 505
VpaK11BI GGWCC 1 cut(s) 227
XapI RAATTY 1 cut(s) 412
XcmI CCANNNNNNNNNTGG 1 cut(s) 1149
XspI CTAG 2 cut(s) 24, 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.