Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034735.1

Orthogroup ID

OG0009182

Physical Location & Seq

Genomic Coordinates Forward (+)

50 .. 778

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034735.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atggaaaaggtggtgtttatgtgtttgggggaagaaagcagtgattttgtgttgcttacgatccatgtgtctgggagattggcaatgtttaagtctgtggagaagaagtggactataattcatgatatgccgtcgccttatgatgatgttatgttgtttaagggccagttttatgctgttgacggcacaggaaggactgtggtggttggcttggacgcgaaaaatccgagtctggctgccaatccggtgtatggtggggacaagaagtttttggtggagtcgaggggggagttgttggtggtggatatgtacttgagcacggatcaggaggtggattgggacgaggatgatgaagtgtcccaagtgcaattggatgggtgcatttacgagaggacggtgaagtttaaggtttataacatggatgaagcagcgcacaagttggtgcagatgaaaagcttgggggatagggtgttgtttttgggggatgactgcacattttctgcctcggcttcggagttgtccggttgtaaaggcaattgtatatattttacggataatttcttctatacaagtggtgaagaagaagggacgttcaagggtcgtgatataggcgtgtttgacttggataatggtactattgcccccttatctgattatccagagtcttcaaagctgttttggccaccccctgtgtggctttcatcgacaacatcccaggtaagtgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

242

Amino Acids

26.99

Weight (kDa)

4.43

Isoelectric Point (pI)

29.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17030 AT2G17036 AT2G17036
fragaria_vesca	FvH4_2g15930 FvH4_2g15930 FvH4_2g15930
malus_domestica	MD05G1128300.v1.1
prunus_persica	Prupe.8G172400_v2.0.a1 Prupe.8G172400_v2.0.a1
pyrus_communis	pycom05g12420
rosa_chinensis	RchiOBHm_Chr6g0279451
rosa_laevigata	RLG00000013146
rosa_multiflora	Rmu_co8218300.1_g000001 Rmu_sc0000274.1_g000005 Rmu_sc0034735.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188900
rosa_rugosa	Rorug06G0124300
rosa_samantha	Rh6AG233600 Rh6BG237900 Rh6CG239900 Rh6DG231600
rosa_wichuraiana	Rw6G020380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	414
AccII	CGCG	1 cut(s)	218
AclWI	GGATC	2 cut(s)	55, 330
AcoI	YGGCCR	1 cut(s)	680
AfaI	GTAC	2 cut(s)	311, 634
AfiI	CCNNNNNNNGG	2 cut(s)	251, 693
AgsI	TTSAA	2 cut(s)	595, 669
AjnI	CCWGG	1 cut(s)	714
AluBI	AGCT	2 cut(s)	456, 673
AluI	AGCT	2 cut(s)	456, 673
Alw21I	GWGCWC	1 cut(s)	320
AlwI	GGATC	2 cut(s)	55, 330
AoxI	GGCC	2 cut(s)	163, 680
ApeKI	GCWGC	2 cut(s)	236, 428
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	409, 587
BalI	TGGCCA	1 cut(s)	682
BbsI	GAAGAC	1 cut(s)	657
Bbv12I	GWGCWC	1 cut(s)	320
BbvI	GCAGC	2 cut(s)	223, 440
BccI	CCATC	1 cut(s)	368
BceAI	ACGGC	2 cut(s)	115, 199
BciT130I	CCWGG	1 cut(s)	716
BisI	GCNGC	2 cut(s)	237, 429
BlsI	GCNGC	2 cut(s)	238, 430
Bme1390I	CCNGG	1 cut(s)	716
BmgT120I	GGNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	716
BpiI	GAAGAC	1 cut(s)	657
BpuEI	CTTGAG	1 cut(s)	334
BsaJI	CCNNGG	2 cut(s)	504, 714
BsaWI	WCCGGW	2 cut(s)	244, 521
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 693
Bse1I	ACTGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	716
BseDI	CCNNGG	2 cut(s)	504, 714
BseGI	GGATG	5 cut(s)	352, 379, 427, 490, 710
BseLI	CCNNNNNNNGG	2 cut(s)	251, 693
BseMI	GCAATG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	223, 440
BsgI	GTGCAG	2 cut(s)	464, 475
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	2 cut(s)	165, 682
BsiHKAI	GWGCWC	1 cut(s)	320
BsiSI	CCGG	2 cut(s)	245, 522
BslFI	GGGAC	4 cut(s)	272, 343, 353, 601
BslI	CCNNNNNNNGG	2 cut(s)	251, 693
BsmFI	GGGAC	4 cut(s)	272, 343, 353, 601
BsnI	GGCC	2 cut(s)	165, 682
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	2 cut(s)	60, 322
BspANI	GGCC	2 cut(s)	165, 682
BspFNI	CGCG	1 cut(s)	218
BspHI	TCATGA	1 cut(s)	121
BspPI	GGATC	2 cut(s)	55, 330
BsrDI	GCAATG	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	504, 714
BssMI	GATC	2 cut(s)	60, 322
Bst2UI	CCWGG	1 cut(s)	716
Bst4CI	ACNGT	2 cut(s)	199, 397
BstF5I	GGATG	5 cut(s)	352, 379, 427, 490, 710
BstFNI	CGCG	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	2 cut(s)	63, 325
BstMBI	GATC	2 cut(s)	60, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	679
BstNI	CCWGG	1 cut(s)	716
BstSCI	CCNGG	1 cut(s)	714
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	2 cut(s)	223, 440
BstV2I	GAAGAC	1 cut(s)	657
BstXI	CCANNNNNNTGG	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	165, 682
BtsCI	GGATG	5 cut(s)	352, 379, 427, 490, 710
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	46
CciI	TCATGA	1 cut(s)	121
CfoI	GCGC	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	310, 633
CviAII	CATG	3 cut(s)	65, 122, 418
CviJI	RGCY	8 cut(s)	165, 210, 236, 456, 509, 673, 682, 697
CviKI_1	RGCY	8 cut(s)	165, 210, 236, 456, 509, 673, 682, 697
CviQI	GTAC	2 cut(s)	310, 633
DpnI	GATC	2 cut(s)	62, 324
DpnII	GATC	2 cut(s)	60, 322
EaeI	YGGCCR	1 cut(s)	680
EcoRII	CCWGG	1 cut(s)	714
FaeI	CATG	3 cut(s)	68, 125, 421
FaqI	GGGAC	4 cut(s)	272, 343, 353, 601
FatI	CATG	3 cut(s)	64, 121, 417
Fnu4HI	GCNGC	2 cut(s)	237, 429
FokI	GGATG	5 cut(s)	359, 386, 434, 497, 697
Fsp4HI	GCNGC	2 cut(s)	237, 429
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	2 cut(s)	237, 429
HaeIII	GGCC	2 cut(s)	165, 682
HapII	CCGG	2 cut(s)	245, 522
HgaI	GACGC	1 cut(s)	224
HhaI	GCGC	1 cut(s)	433
Hin1II	CATG	3 cut(s)	68, 125, 421
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	454
HinfI	GANTC	3 cut(s)	229, 278, 662
HpaII	CCGG	2 cut(s)	245, 522
HphI	GGTGA	2 cut(s)	409, 587
Hpy166II	GTNNAC	2 cut(s)	111, 181
Hpy188I	TCNGA	3 cut(s)	228, 514, 652
Hpy188III	TCNNGA	4 cut(s)	122, 326, 602, 659
Hpy8I	GTNNAC	2 cut(s)	111, 181
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	2 cut(s)	186, 578
HpyCH4III	ACNGT	2 cut(s)	199, 397
HpyCH4IV	ACGT	1 cut(s)	590
HpyCH4V	TGCA	4 cut(s)	367, 381, 445, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	679
HpySE526I	ACGT	1 cut(s)	590
Hsp92II	CATG	3 cut(s)	68, 125, 421
HspAI	GCGC	1 cut(s)	431
Kzo9I	GATC	2 cut(s)	60, 322
Lsp1109I	GCAGC	2 cut(s)	223, 440
MaeII	ACGT	1 cut(s)	590
MalI	GATC	2 cut(s)	62, 324
MboI	GATC	2 cut(s)	60, 322
MboII	GAAGA	6 cut(s)	44, 115, 553, 590, 593, 657
MfeI	CAATTG	2 cut(s)	368, 535
MhlI	GDGCHC	1 cut(s)	320
MlsI	TGGCCA	1 cut(s)	682
MluCI	AATT	4 cut(s)	117, 368, 535, 556
MluNI	TGGCCA	1 cut(s)	682
MlyI	GAGTC	3 cut(s)	238, 287, 671
MnlI	CCTC	5 cut(s)	276, 322, 337, 384, 514
Mox20I	TGGCCA	1 cut(s)	682
MscI	TGGCCA	1 cut(s)	682
MseI	TTAA	3 cut(s)	90, 159, 405
Msp20I	TGGCCA	1 cut(s)	682
MspI	CCGG	2 cut(s)	245, 522
MspR9I	CCNGG	1 cut(s)	716
MunI	CAATTG	2 cut(s)	368, 535
MvaI	CCWGG	1 cut(s)	716
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	679
NdeII	GATC	2 cut(s)	60, 322
NlaIII	CATG	3 cut(s)	68, 125, 421
NmeAIII	GCCGAG	1 cut(s)	485
PagI	TCATGA	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	238, 430
PleI	GAGTC	3 cut(s)	237, 286, 670
PpsI	GAGTC	3 cut(s)	237, 286, 670
PsiI	TTATAA	1 cut(s)	414
Psp6I	CCWGG	1 cut(s)	714
PspGI	CCWGG	1 cut(s)	714
PspPI	GGNCC	1 cut(s)	163
RsaI	GTAC	2 cut(s)	311, 634
RsaNI	GTAC	2 cut(s)	310, 633
SaqAI	TTAA	3 cut(s)	90, 159, 405
SatI	GCNGC	2 cut(s)	237, 429
Sau3AI	GATC	2 cut(s)	60, 322
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	3 cut(s)	238, 287, 671
ScrFI	CCNGG	1 cut(s)	716
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	7 cut(s)	12, 333, 411, 458, 593, 675, 720
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	4 cut(s)	117, 368, 535, 556
StyD4I	CCNGG	1 cut(s)	714
TaaI	ACNGT	2 cut(s)	199, 397
TaiI	ACGT	1 cut(s)	593
TaqI	TCGA	2 cut(s)	281, 704
TasI	AATT	4 cut(s)	117, 368, 535, 556
TatI	WGTACW	1 cut(s)	309
Tru1I	TTAA	3 cut(s)	90, 159, 405
Tru9I	TTAA	3 cut(s)	90, 159, 405
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	2 cut(s)	236, 428
TspDTI	ATGAA	5 cut(s)	110, 366, 438, 464, 690
TspGWI	ACGGA	2 cut(s)	335, 566
TspRI	CASTG	1 cut(s)	46
XcmI	CCANNNNNNNNNTGG	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.